Wall clock time and date at job start Tue Mar 31 2020 04:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53000 * 109.46726 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00271 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.52137 * 34.99555 * 8 7 5 10 10 C 1.53117 * 109.52055 * 274.86886 * 8 7 5 11 11 C 1.53038 * 109.27797 * 182.43819 * 10 8 7 12 12 N 1.46846 * 109.52264 * 59.18348 * 11 10 8 13 13 C 1.46902 * 111.00090 * 174.16151 * 12 11 10 14 14 C 1.50694 * 109.47162 * 66.04429 * 13 12 11 15 15 O 1.21293 * 120.00048 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00111 * 180.02562 * 14 13 12 17 17 C 1.37101 * 120.00345 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99552 * 0.02562 * 17 16 14 19 19 C 1.38944 * 119.99866 * 179.97438 * 17 16 14 20 20 N 1.31420 * 119.99407 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00252 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46885 * 90.00173 * 21 19 17 23 23 H 1.48501 * 109.47162 * 209.99866 * 21 19 17 24 24 H 1.48498 * 109.47349 * 330.00000 * 21 19 17 25 25 C 1.46851 * 111.19442 * 298.25602 * 12 11 10 26 26 C 1.53039 * 109.57570 * 61.71108 * 25 12 11 27 27 H 1.09000 * 109.45684 * 60.82529 * 26 25 12 28 28 O 1.42898 * 109.55717 * 180.94314 * 26 25 12 29 29 H 1.08996 * 109.46933 * 60.00042 * 1 2 3 30 30 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46885 * 300.00332 * 1 2 3 32 32 H 1.09001 * 109.46938 * 60.00058 * 3 2 1 33 33 H 1.08992 * 109.47388 * 300.00049 * 3 2 1 34 34 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 35 35 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 36 36 H 0.97005 * 119.99463 * 359.97438 * 7 5 4 37 37 H 1.08998 * 109.50799 * 302.38452 * 10 8 7 38 38 H 1.09004 * 109.50481 * 62.50435 * 10 8 7 39 39 H 1.09005 * 109.46176 * 179.19836 * 11 10 8 40 40 H 1.09000 * 109.46543 * 299.17592 * 11 10 8 41 41 H 1.08999 * 109.46740 * 186.04426 * 13 12 11 42 42 H 1.08998 * 109.46553 * 306.04171 * 13 12 11 43 43 H 0.96998 * 119.99871 * 359.97438 * 16 14 13 44 44 H 0.96998 * 119.99326 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.46227 * 181.75700 * 25 12 11 46 46 H 1.08996 * 109.46688 * 301.72599 * 25 12 11 47 47 H 0.96705 * 113.99638 * 299.82920 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5614 0.0013 6 8 3.4356 3.5425 0.0008 7 7 5.4888 2.7023 0.0014 8 6 6.0847 4.0406 0.0026 9 1 5.4641 4.7151 0.5924 10 6 6.1809 4.5591 -1.4349 11 6 6.8593 5.9309 -1.4329 12 7 8.1998 5.8145 -0.8448 13 6 8.9337 7.0826 -0.9521 14 6 8.2584 8.1273 -0.1015 15 8 7.2640 7.8433 0.5322 16 7 8.7595 9.3772 -0.0449 17 6 8.1449 10.3278 0.7286 18 1 7.2594 10.0749 1.2929 19 6 8.6619 11.6161 0.7873 20 7 8.0730 12.5271 1.5292 21 14 10.1946 12.0529 -0.1869 22 1 9.8029 12.5384 -1.5345 23 1 10.9462 13.1183 0.5239 24 1 11.0533 10.8492 -0.3248 25 6 8.1300 5.3634 0.5509 26 6 7.4889 3.9750 0.6096 27 1 8.0975 3.2699 0.0435 28 8 7.4011 3.5457 1.9697 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8568 0.6438 0.8908 35 1 3.8575 0.6436 -0.8892 36 1 6.0590 1.9174 0.0014 37 1 6.7683 3.8635 -2.0342 38 1 5.1800 4.6488 -1.8572 39 1 6.9422 6.2965 -2.4564 40 1 6.2643 6.6295 -0.8447 41 1 9.9579 6.9399 -0.6076 42 1 8.9424 7.4104 -1.9916 43 1 9.5550 9.6042 -0.5514 44 1 8.4337 13.4266 1.5699 45 1 9.1358 5.3169 0.9683 46 1 7.5289 6.0647 1.1297 47 1 8.2557 3.4814 2.4178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099621626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:42 Heat of formation + Delta-G solvation = -189.797343 kcal Electronic energy + Delta-G solvation = -28817.959692 eV Core-core repulsion = 24613.734337 eV Total energy + Delta-G solvation = -4204.225354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54157 -40.74507 -39.37960 -38.66123 -37.13950 -36.09357 -35.62315 -33.83050 -33.31893 -32.11728 -30.71068 -28.80810 -27.52075 -26.33900 -24.86353 -24.13787 -23.38005 -21.54353 -21.36402 -21.06885 -20.15475 -18.51915 -18.30157 -17.80522 -17.65101 -17.32877 -16.96027 -16.76219 -16.46416 -16.14561 -15.97435 -15.81715 -15.67359 -15.35310 -15.03730 -14.82439 -14.65615 -14.33862 -14.17201 -13.93650 -13.63233 -13.50958 -13.32526 -13.00617 -12.84765 -12.47262 -12.44341 -12.41305 -12.24339 -12.18104 -12.13127 -11.99531 -11.58815 -11.48000 -11.11777 -11.03629 -10.85293 -10.71220 -10.24678 -10.13071 -9.11767 -8.44921 -6.05985 1.28265 1.33862 1.43287 1.57610 1.89522 1.94102 2.20754 2.78142 2.90477 2.96229 3.11934 3.20636 3.66723 3.73562 3.98780 4.00295 4.03381 4.12706 4.14551 4.21042 4.37090 4.41540 4.46570 4.49721 4.50718 4.54730 4.63396 4.70201 4.78206 4.80895 4.83591 4.85152 4.88280 4.96373 5.15706 5.28335 5.44410 5.49778 5.82724 5.93780 5.95390 6.09875 6.52090 6.54324 6.84614 6.85596 7.23369 7.35650 7.93287 8.72875 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.002274 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.963580 B =12309.265556 C =12812.682528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.076 3.924 4 C -0.126 4.126 5 C 0.512 3.488 6 O -0.593 6.593 7 N -0.700 5.700 8 C 0.154 3.846 9 H 0.039 0.961 10 C -0.105 4.105 11 C 0.040 3.960 12 N -0.488 5.488 13 C 0.046 3.954 14 C 0.413 3.587 15 O -0.615 6.615 16 N -0.586 5.586 17 C -0.329 4.329 18 H 0.049 0.951 19 C -0.018 4.018 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.258 1.258 23 H -0.276 1.276 24 H -0.226 1.226 25 C 0.001 3.999 26 C 0.121 3.879 27 H 0.102 0.898 28 O -0.577 6.577 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.419 0.581 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.020 0.980 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.391 0.609 44 H 0.279 0.721 45 H 0.092 0.908 46 H 0.042 0.958 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.845 -26.653 -9.189 28.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.001 4.001 4 C -0.165 4.165 5 C 0.300 3.700 6 O -0.474 6.474 7 N -0.351 5.351 8 C 0.049 3.951 9 H 0.057 0.943 10 C -0.144 4.144 11 C -0.089 4.089 12 N -0.211 5.211 13 C -0.085 4.085 14 C 0.201 3.799 15 O -0.501 6.501 16 N -0.228 5.228 17 C -0.459 4.459 18 H 0.067 0.933 19 C -0.217 4.217 20 N -0.576 5.576 21 Si 0.788 3.212 22 H -0.182 1.182 23 H -0.202 1.202 24 H -0.149 1.149 25 C -0.128 4.128 26 C 0.061 3.939 27 H 0.119 0.881 28 O -0.385 6.385 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.257 0.743 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.038 0.962 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.060 0.940 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.407 -26.525 -9.073 28.036 hybrid contribution 0.311 2.037 0.843 2.226 sum 0.718 -24.488 -8.230 25.844 Atomic orbital electron populations 1.22950 0.79324 1.04150 1.00668 1.87757 1.21549 1.27654 1.95618 1.22096 0.93012 0.84206 1.00803 1.21414 0.94213 0.93050 1.07844 1.21036 0.82521 0.91779 0.74667 1.90739 1.62121 1.42805 1.51721 1.45717 1.06350 1.08843 1.74213 1.20825 0.93307 0.84449 0.96538 0.94305 1.21768 1.00747 0.96607 0.95271 1.22227 0.89587 0.96944 1.00094 1.62558 1.16471 1.25413 1.16630 1.22343 0.99135 0.86026 1.01024 1.22458 0.86819 0.84350 0.86315 1.90507 1.29546 1.80283 1.49794 1.42226 1.27379 1.09866 1.43282 1.18978 1.10964 0.91122 1.24788 0.93257 1.26216 1.02651 0.94538 0.98282 1.69828 1.42648 1.04501 1.40608 0.85316 0.77302 0.80062 0.78520 1.18207 1.20159 1.14928 1.23079 1.02050 0.96980 0.90656 1.21847 0.94186 0.94585 0.83301 0.88060 1.86521 1.37195 1.89476 1.25287 0.93437 0.87545 0.93751 0.93928 0.93199 0.86078 0.85183 0.74291 0.87778 0.91951 0.88983 0.96198 0.85360 0.85615 0.77362 0.91162 0.88948 0.93990 0.75226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.69 10.70 -148.98 -1.59 -9.29 16 3 C 0.08 1.54 5.23 71.98 0.38 1.91 16 4 C -0.13 -2.04 6.07 29.85 0.18 -1.86 16 5 C 0.51 12.63 7.80 87.66 0.68 13.31 16 6 O -0.59 -21.22 15.65 -3.02 -0.05 -21.27 16 7 N -0.70 -14.59 4.99 -442.17 -2.21 -16.80 16 8 C 0.15 4.26 2.20 45.07 0.10 4.36 16 9 H 0.04 1.54 7.58 -2.39 -0.02 1.52 16 10 C -0.11 -2.67 5.67 30.65 0.17 -2.49 16 11 C 0.04 1.22 5.09 86.33 0.44 1.66 16 12 N -0.49 -13.24 4.86 -900.92 -4.38 -17.61 16 13 C 0.05 1.29 5.86 85.55 0.50 1.79 16 14 C 0.41 17.78 7.20 87.65 0.63 18.42 16 15 O -0.62 -32.87 11.20 -3.07 -0.03 -32.91 16 16 N -0.59 -26.94 5.09 -306.98 -1.56 -28.50 16 17 C -0.33 -19.26 10.16 84.04 0.85 -18.41 16 18 H 0.05 3.49 7.39 -2.91 -0.02 3.47 16 19 C -0.02 -1.02 5.50 84.92 0.47 -0.55 16 20 N -0.94 -56.91 13.96 21.66 0.30 -56.61 16 21 Si 0.97 38.36 27.74 68.60 1.90 40.27 16 22 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 24 H -0.23 -7.35 6.52 99.48 0.65 -6.70 16 25 C 0.00 0.04 4.60 86.33 0.40 0.44 16 26 C 0.12 2.76 3.14 30.65 0.10 2.86 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 O -0.58 -13.32 13.24 -148.98 -1.97 -15.29 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 33 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 34 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.42 5.38 8.60 -92.70 -0.80 4.59 16 37 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.09 2.41 8.06 -2.38 -0.02 2.39 16 40 H 0.02 0.83 6.00 -2.39 -0.01 0.81 16 41 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.13 2.79 8.06 -2.39 -0.02 2.77 16 43 H 0.39 14.64 5.76 -92.71 -0.53 14.10 16 44 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.09 2.24 8.12 -2.39 -0.02 2.22 16 46 H 0.04 1.75 5.36 -2.39 -0.01 1.74 16 47 H 0.40 5.54 9.09 -74.05 -0.67 4.86 16 Total: -1.00 -88.17 379.49 -4.49 -92.66 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: -1.05 Total: 42.32 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 6.15 Total: 23.02 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -7.85 Total: -119.52 kcal Atomic # 8 Polarization: -75.10 SS G_CDS: -3.65 Total: -78.75 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.27 kcal Total: -88.17 -4.49 -92.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099621626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.134 kcal (2) G-P(sol) polarization free energy of solvation -88.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds