Wall clock time and date at job start Tue Mar 31 2020 04:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00203 * 2 1 4 4 C 1.52998 * 109.47194 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47348 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99503 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00081 * 179.72561 * 5 4 3 8 8 C 1.46506 * 119.99968 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.51948 * 35.11849 * 8 7 5 10 10 C 1.53122 * 109.51860 * 274.99882 * 8 7 5 11 11 C 1.53035 * 109.27652 * 182.44171 * 10 8 7 12 12 N 1.46844 * 109.52721 * 59.17429 * 11 10 8 13 13 C 1.46895 * 111.00400 * 174.16002 * 12 11 10 14 14 C 1.50699 * 109.47409 * 293.95989 * 13 12 11 15 15 O 1.21298 * 119.99650 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00151 * 180.02562 * 14 13 12 17 17 C 1.37105 * 120.00128 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99753 * 359.97438 * 17 16 14 19 19 C 1.38948 * 120.00188 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00001 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99904 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46963 * 90.00387 * 21 19 17 23 23 H 1.48496 * 109.47386 * 209.99830 * 21 19 17 24 24 H 1.48503 * 109.47486 * 330.00337 * 21 19 17 25 25 C 1.46854 * 111.19751 * 298.26180 * 12 11 10 26 26 C 1.53030 * 109.52331 * 61.73956 * 25 12 11 27 27 H 1.08996 * 109.50317 * 180.88021 * 26 25 12 28 28 O 1.42903 * 109.50545 * 60.76313 * 26 25 12 29 29 H 1.09004 * 109.46926 * 60.00241 * 1 2 3 30 30 H 1.09005 * 109.47352 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47339 * 300.00217 * 1 2 3 32 32 H 1.09000 * 109.47468 * 59.99846 * 3 2 1 33 33 H 1.09002 * 109.46794 * 299.99455 * 3 2 1 34 34 H 1.09001 * 109.47671 * 59.99913 * 4 3 2 35 35 H 1.08998 * 109.47454 * 299.99911 * 4 3 2 36 36 H 0.96998 * 120.00525 * 359.97438 * 7 5 4 37 37 H 1.09004 * 109.50005 * 302.37908 * 10 8 7 38 38 H 1.08998 * 109.50286 * 62.49709 * 10 8 7 39 39 H 1.08994 * 109.46432 * 179.19384 * 11 10 8 40 40 H 1.09002 * 109.45938 * 299.16389 * 11 10 8 41 41 H 1.09005 * 109.47011 * 53.95827 * 13 12 11 42 42 H 1.08999 * 109.47212 * 173.95644 * 13 12 11 43 43 H 0.96999 * 120.00009 * 359.97438 * 16 14 13 44 44 H 0.96994 * 119.99990 * 180.02562 * 20 19 17 45 45 H 1.09007 * 109.45856 * 181.75582 * 25 12 11 46 46 H 1.08998 * 109.45769 * 301.72141 * 25 12 11 47 47 H 0.96694 * 113.99982 * 60.19323 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1485 2.5613 0.0000 6 8 3.4356 3.5425 -0.0013 7 7 5.4888 2.7021 0.0060 8 6 6.0847 4.0405 0.0060 9 1 5.4624 4.7163 0.5926 10 6 6.1847 4.5559 -1.4324 11 6 6.8632 5.9277 -1.4315 12 7 8.2021 5.8126 -0.8395 13 6 8.9363 7.0803 -0.9476 14 6 9.2104 7.3800 -2.3988 15 8 8.8318 6.6126 -3.2585 16 7 9.8771 8.5001 -2.7414 17 6 10.1261 8.7729 -4.0617 18 1 9.7883 8.0901 -4.8273 19 6 10.8130 9.9280 -4.4150 20 7 11.2235 10.7591 -3.4835 21 14 11.1527 10.2993 -6.2138 22 1 10.0303 11.0927 -6.7760 23 1 12.4137 11.0750 -6.3296 24 1 11.2841 9.0257 -6.9660 25 6 8.1285 5.3644 0.5570 26 6 7.4879 3.9759 0.6154 27 1 7.4191 3.6502 1.6533 28 8 8.2870 3.0502 -0.1239 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8462 -0.8901 34 1 3.8575 0.6435 -0.8891 35 1 3.8567 0.6438 0.8908 36 1 6.0590 1.9174 0.0111 37 1 6.7738 3.8590 -2.0286 38 1 5.1850 4.6446 -1.8575 39 1 6.9489 6.2911 -2.4555 40 1 6.2665 6.6275 -0.8465 41 1 8.3388 7.8841 -0.5172 42 1 9.8802 7.0007 -0.4084 43 1 10.1802 9.1135 -2.0539 44 1 11.7027 11.5656 -3.7301 45 1 9.1333 5.3189 0.9772 46 1 7.5258 6.0670 1.1325 47 1 9.1908 2.9586 0.2075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099621627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:50 Heat of formation + Delta-G solvation = -161.162455 kcal Electronic energy + Delta-G solvation = -28453.677014 eV Core-core repulsion = 24250.693362 eV Total energy + Delta-G solvation = -4202.983652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40808 -39.20615 -38.13724 -37.80104 -35.64623 -34.77812 -33.82551 -32.43703 -31.34937 -30.91180 -29.83898 -27.43510 -26.73896 -24.79131 -23.82798 -23.12216 -22.36127 -20.48548 -19.91803 -19.19353 -17.85949 -17.67117 -17.00972 -16.71824 -16.61126 -16.05262 -15.90371 -15.39749 -15.25808 -15.00445 -14.91628 -14.50904 -14.29130 -13.94710 -13.85175 -13.56993 -13.43126 -13.17051 -12.85456 -12.70503 -12.26400 -12.13128 -11.82946 -11.74532 -11.59885 -11.52807 -11.48999 -11.20918 -11.08306 -10.78787 -10.54227 -10.37848 -10.21124 -10.10373 -10.02742 -9.93419 -9.47029 -9.12007 -8.40654 -7.96014 -7.82297 -6.40539 -3.81119 2.43590 2.75696 3.18735 3.27355 3.33350 3.60953 3.85759 3.92494 4.17679 4.28514 4.45802 4.58462 4.68290 4.78713 4.85821 4.89580 4.99924 5.02896 5.07678 5.17131 5.25476 5.26585 5.30899 5.43435 5.47491 5.48339 5.51546 5.57549 5.67002 5.74652 5.80616 5.94005 6.06235 6.24786 6.30566 6.54381 6.58286 6.75753 7.26618 7.34154 7.38133 7.56563 7.62924 8.03728 8.07978 8.63407 9.19757 9.56002 10.08081 10.77264 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.002066 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.177628 B =13551.634548 C =14260.873676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.076 3.924 4 C -0.140 4.140 5 C 0.516 3.484 6 O -0.544 6.544 7 N -0.716 5.716 8 C 0.153 3.847 9 H 0.093 0.907 10 C -0.117 4.117 11 C 0.056 3.944 12 N -0.504 5.504 13 C 0.046 3.954 14 C 0.444 3.556 15 O -0.574 6.574 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.023 3.977 26 C 0.107 3.893 27 H 0.061 0.939 28 O -0.548 6.548 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.407 0.593 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.022 0.978 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.081 0.919 46 H 0.040 0.960 47 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.425 -17.249 13.605 25.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.001 4.001 4 C -0.180 4.180 5 C 0.302 3.698 6 O -0.422 6.422 7 N -0.367 5.367 8 C 0.048 3.952 9 H 0.111 0.889 10 C -0.156 4.156 11 C -0.072 4.072 12 N -0.228 5.228 13 C -0.086 4.086 14 C 0.229 3.771 15 O -0.458 6.458 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.106 4.106 26 C 0.047 3.953 27 H 0.078 0.922 28 O -0.353 6.353 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.242 0.758 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.040 0.960 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.058 0.942 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -13.266 -17.458 12.391 25.185 hybrid contribution 0.665 1.316 0.441 1.539 sum -12.600 -16.142 12.832 24.166 Atomic orbital electron populations 1.22736 0.80561 1.02734 1.00271 1.87792 1.20105 1.28087 1.95587 1.22163 0.91908 0.84162 1.01856 1.21468 0.95476 0.95281 1.05758 1.20404 0.82467 0.91027 0.75853 1.90726 1.60982 1.40752 1.49744 1.45954 1.06325 1.09609 1.74836 1.21141 0.91409 0.84141 0.98501 0.88885 1.21845 1.00571 0.97698 0.95442 1.22227 0.87006 0.95424 1.02554 1.61457 1.17515 1.29337 1.14519 1.21854 0.98878 0.90423 0.97403 1.19721 0.84263 0.83630 0.89458 1.90501 1.55505 1.48875 1.50940 1.41866 1.49692 1.19890 1.08747 1.19698 1.33323 1.06039 0.83661 0.87917 1.25251 0.97012 0.95821 0.99887 1.69611 1.39058 1.12665 1.33079 0.85862 0.77685 0.78609 0.82162 1.20465 1.20959 1.19417 1.22799 1.01045 0.96064 0.90705 1.21990 0.90380 0.89023 0.93884 0.92160 1.86485 1.27164 1.62587 1.59073 0.93873 0.89539 0.93957 0.92413 0.92255 0.87865 0.88074 0.75785 0.89734 0.91543 0.87456 0.96006 0.93552 0.89428 0.77546 0.91925 0.90028 0.94241 0.77297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.40 -3.74 10.70 -35.23 -0.38 -4.11 16 3 C 0.08 0.70 5.23 37.16 0.19 0.90 16 4 C -0.14 -1.14 6.07 -27.88 -0.17 -1.31 16 5 C 0.52 5.71 7.80 -10.98 -0.09 5.62 16 6 O -0.54 -8.06 15.65 5.56 0.09 -7.98 16 7 N -0.72 -7.25 5.05 -53.68 -0.27 -7.52 16 8 C 0.15 1.82 2.31 -67.81 -0.16 1.67 16 9 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 10 C -0.12 -1.74 5.52 -26.65 -0.15 -1.89 16 11 C 0.06 0.94 5.11 -3.84 -0.02 0.92 16 12 N -0.50 -8.12 4.27 -236.12 -1.01 -9.13 16 13 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 14 C 0.44 10.39 7.46 -10.99 -0.08 10.31 16 15 O -0.57 -15.40 13.92 5.54 0.08 -15.32 16 16 N -0.57 -14.25 5.29 -10.96 -0.06 -14.31 16 17 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 18 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 21 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C 0.02 0.27 5.12 -3.83 -0.02 0.25 16 26 C 0.11 1.09 3.42 -26.66 -0.09 1.00 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 O -0.55 -5.81 12.06 -35.23 -0.42 -6.24 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.41 3.35 8.12 -40.82 -0.33 3.02 16 37 H 0.08 1.41 7.80 -51.93 -0.40 1.00 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.11 2.22 5.80 -51.93 -0.30 1.92 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.09 1.36 7.98 -51.93 -0.41 0.94 16 43 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.08 0.81 8.01 -51.92 -0.42 0.40 16 46 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.38 2.78 9.08 45.56 0.41 3.19 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -34.36 385.87 -6.94 -41.30 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -6.75 Total: 13.56 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 0.27 Total: 11.64 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.61 Total: -54.77 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.64 Total: -33.65 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.36 -6.94 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099621627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.865 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds