Wall clock time and date at job start Tue Mar 31 2020 04:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00203 * 2 1 4 4 C 1.52998 * 109.47194 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47348 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99503 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00081 * 179.72561 * 5 4 3 8 8 C 1.46506 * 119.99968 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.51948 * 35.11849 * 8 7 5 10 10 C 1.53122 * 109.51860 * 274.99882 * 8 7 5 11 11 C 1.53035 * 109.27652 * 182.44171 * 10 8 7 12 12 N 1.46844 * 109.52721 * 59.17429 * 11 10 8 13 13 C 1.46895 * 111.00400 * 174.16002 * 12 11 10 14 14 C 1.50699 * 109.47409 * 293.95989 * 13 12 11 15 15 O 1.21298 * 119.99650 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00151 * 180.02562 * 14 13 12 17 17 C 1.37105 * 120.00128 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99753 * 359.97438 * 17 16 14 19 19 C 1.38948 * 120.00188 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00001 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99904 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46963 * 90.00387 * 21 19 17 23 23 H 1.48496 * 109.47386 * 209.99830 * 21 19 17 24 24 H 1.48503 * 109.47486 * 330.00337 * 21 19 17 25 25 C 1.46854 * 111.19751 * 298.26180 * 12 11 10 26 26 C 1.53030 * 109.52331 * 61.73956 * 25 12 11 27 27 H 1.08996 * 109.50317 * 180.88021 * 26 25 12 28 28 O 1.42903 * 109.50545 * 60.76313 * 26 25 12 29 29 H 1.09004 * 109.46926 * 60.00241 * 1 2 3 30 30 H 1.09005 * 109.47352 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47339 * 300.00217 * 1 2 3 32 32 H 1.09000 * 109.47468 * 59.99846 * 3 2 1 33 33 H 1.09002 * 109.46794 * 299.99455 * 3 2 1 34 34 H 1.09001 * 109.47671 * 59.99913 * 4 3 2 35 35 H 1.08998 * 109.47454 * 299.99911 * 4 3 2 36 36 H 0.96998 * 120.00525 * 359.97438 * 7 5 4 37 37 H 1.09004 * 109.50005 * 302.37908 * 10 8 7 38 38 H 1.08998 * 109.50286 * 62.49709 * 10 8 7 39 39 H 1.08994 * 109.46432 * 179.19384 * 11 10 8 40 40 H 1.09002 * 109.45938 * 299.16389 * 11 10 8 41 41 H 1.09005 * 109.47011 * 53.95827 * 13 12 11 42 42 H 1.08999 * 109.47212 * 173.95644 * 13 12 11 43 43 H 0.96999 * 120.00009 * 359.97438 * 16 14 13 44 44 H 0.96994 * 119.99990 * 180.02562 * 20 19 17 45 45 H 1.09007 * 109.45856 * 181.75582 * 25 12 11 46 46 H 1.08998 * 109.45769 * 301.72141 * 25 12 11 47 47 H 0.96694 * 113.99982 * 60.19323 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1485 2.5613 0.0000 6 8 3.4356 3.5425 -0.0013 7 7 5.4888 2.7021 0.0060 8 6 6.0847 4.0405 0.0060 9 1 5.4624 4.7163 0.5926 10 6 6.1847 4.5559 -1.4324 11 6 6.8632 5.9277 -1.4315 12 7 8.2021 5.8126 -0.8395 13 6 8.9363 7.0803 -0.9476 14 6 9.2104 7.3800 -2.3988 15 8 8.8318 6.6126 -3.2585 16 7 9.8771 8.5001 -2.7414 17 6 10.1261 8.7729 -4.0617 18 1 9.7883 8.0901 -4.8273 19 6 10.8130 9.9280 -4.4150 20 7 11.2235 10.7591 -3.4835 21 14 11.1527 10.2993 -6.2138 22 1 10.0303 11.0927 -6.7760 23 1 12.4137 11.0750 -6.3296 24 1 11.2841 9.0257 -6.9660 25 6 8.1285 5.3644 0.5570 26 6 7.4879 3.9759 0.6154 27 1 7.4191 3.6502 1.6533 28 8 8.2870 3.0502 -0.1239 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8462 -0.8901 34 1 3.8575 0.6435 -0.8891 35 1 3.8567 0.6438 0.8908 36 1 6.0590 1.9174 0.0111 37 1 6.7738 3.8590 -2.0286 38 1 5.1850 4.6446 -1.8575 39 1 6.9489 6.2911 -2.4555 40 1 6.2665 6.6275 -0.8465 41 1 8.3388 7.8841 -0.5172 42 1 9.8802 7.0007 -0.4084 43 1 10.1802 9.1135 -2.0539 44 1 11.7027 11.5656 -3.7301 45 1 9.1333 5.3189 0.9772 46 1 7.5258 6.0670 1.1325 47 1 9.1908 2.9586 0.2075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099621627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:48 Heat of formation + Delta-G solvation = -192.114407 kcal Electronic energy + Delta-G solvation = -28455.019192 eV Core-core repulsion = 24250.693362 eV Total energy + Delta-G solvation = -4204.325829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38686 -40.46100 -39.48031 -38.67142 -36.81077 -35.84831 -35.67329 -33.40863 -33.16579 -32.05770 -30.84568 -28.73535 -27.50229 -26.41959 -24.89070 -24.18039 -23.45316 -21.39911 -21.04037 -20.86061 -19.86973 -18.48586 -18.03688 -17.64749 -17.46137 -17.30945 -16.83023 -16.71420 -16.36207 -16.24213 -15.93545 -15.79232 -15.55587 -15.39387 -15.20710 -14.87304 -14.48700 -14.21984 -13.97811 -13.86053 -13.54621 -13.45094 -13.09346 -12.85335 -12.74249 -12.67456 -12.49384 -12.40737 -12.38119 -12.16137 -12.14505 -12.07741 -11.60434 -11.44546 -10.99470 -10.84977 -10.69380 -10.26155 -10.05098 -9.95959 -9.15303 -8.45802 -5.93952 1.37463 1.41086 1.53691 1.57006 1.96728 2.07768 2.28486 2.71136 2.94353 3.21002 3.35943 3.39850 3.68696 3.76172 3.86698 4.01022 4.03198 4.11967 4.14265 4.29192 4.37011 4.45395 4.48422 4.50917 4.51674 4.54062 4.60190 4.69330 4.73448 4.77609 4.81207 4.82872 4.84711 4.86738 5.07336 5.30218 5.41690 5.46520 5.88919 6.07775 6.12313 6.22886 6.54090 6.62579 7.01496 7.14792 7.21582 7.58675 8.15369 8.71586 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.002066 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.177628 B =13551.634548 C =14260.873676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.077 3.923 4 C -0.131 4.131 5 C 0.515 3.485 6 O -0.586 6.586 7 N -0.705 5.705 8 C 0.155 3.845 9 H 0.088 0.912 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.519 5.519 13 C 0.058 3.942 14 C 0.440 3.560 15 O -0.614 6.614 16 N -0.575 5.575 17 C -0.331 4.331 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.274 1.274 25 C 0.019 3.981 26 C 0.117 3.883 27 H 0.099 0.901 28 O -0.564 6.564 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.419 0.581 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.107 0.893 46 H 0.053 0.947 47 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 -18.368 15.558 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.000 4.000 4 C -0.170 4.170 5 C 0.303 3.697 6 O -0.467 6.467 7 N -0.356 5.356 8 C 0.050 3.950 9 H 0.106 0.894 10 C -0.145 4.145 11 C -0.068 4.068 12 N -0.244 5.244 13 C -0.073 4.073 14 C 0.228 3.772 15 O -0.500 6.500 16 N -0.213 5.213 17 C -0.461 4.461 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.198 1.198 23 H -0.194 1.194 24 H -0.199 1.199 25 C -0.109 4.109 26 C 0.057 3.943 27 H 0.117 0.883 28 O -0.372 6.372 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.257 0.743 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.230 0.770 44 H 0.086 0.914 45 H 0.126 0.874 46 H 0.071 0.929 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.719 -18.603 14.383 26.734 hybrid contribution 0.450 1.612 -0.162 1.682 sum -12.269 -16.991 14.221 25.327 Atomic orbital electron populations 1.22942 0.79296 1.04073 1.00743 1.87763 1.21587 1.27911 1.95630 1.22107 0.92753 0.84156 1.01000 1.21434 0.94477 0.93532 1.07564 1.20916 0.82430 0.91665 0.74712 1.90712 1.61908 1.42367 1.51690 1.45839 1.06265 1.09413 1.74095 1.21003 0.93112 0.84843 0.96026 0.89408 1.21667 0.98877 0.96318 0.97604 1.22010 0.88160 0.96494 1.00114 1.61399 1.16655 1.28482 1.17886 1.21741 1.00825 0.91902 0.92862 1.20844 0.82230 0.82218 0.91951 1.90482 1.56468 1.49927 1.53083 1.41930 1.50559 1.20797 1.08020 1.19631 1.35156 1.06687 0.84616 0.90526 1.25995 0.96215 0.95131 1.03904 1.69666 1.38990 1.12870 1.34608 0.84956 0.78080 0.78192 0.77275 1.19835 1.19428 1.19904 1.23023 1.03126 0.96932 0.87787 1.21969 0.88680 0.88307 0.95358 0.88343 1.86456 1.28448 1.62455 1.59820 0.93681 0.87811 0.93255 0.92871 0.93663 0.86555 0.85539 0.74348 0.91819 0.93099 0.92217 0.95293 0.91833 0.86542 0.77038 0.91363 0.87443 0.92933 0.75449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.22 10.70 -148.98 -1.59 -8.81 16 3 C 0.08 1.37 5.23 71.98 0.38 1.75 16 4 C -0.13 -1.90 6.07 29.85 0.18 -1.72 16 5 C 0.51 10.86 7.80 87.66 0.68 11.55 16 6 O -0.59 -17.40 15.65 -3.04 -0.05 -17.45 16 7 N -0.70 -13.06 5.05 -442.14 -2.23 -15.30 16 8 C 0.16 3.49 2.31 45.07 0.10 3.59 16 9 H 0.09 2.12 7.58 -2.38 -0.02 2.11 16 10 C -0.11 -3.22 5.52 30.65 0.17 -3.05 16 11 C 0.06 2.09 5.11 86.33 0.44 2.54 16 12 N -0.52 -16.16 4.27 -900.94 -3.85 -20.02 16 13 C 0.06 1.95 5.45 85.56 0.47 2.42 16 14 C 0.44 21.05 7.46 87.66 0.65 21.70 16 15 O -0.61 -34.36 13.92 -3.09 -0.04 -34.40 16 16 N -0.58 -29.67 5.29 -306.98 -1.62 -31.29 16 17 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 18 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 19 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 20 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 21 Si 0.99 43.51 29.55 68.60 2.03 45.53 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.02 0.39 5.12 86.32 0.44 0.83 16 26 C 0.12 2.00 3.42 30.64 0.10 2.10 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 O -0.56 -10.39 12.06 -148.98 -1.80 -12.19 16 29 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 33 H 0.05 0.91 8.10 -2.39 -0.02 0.90 16 34 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.42 5.83 8.12 -92.71 -0.75 5.08 16 37 H 0.06 2.19 7.80 -2.38 -0.02 2.17 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 2.63 5.80 -2.39 -0.01 2.61 16 40 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 1.96 8.12 -2.38 -0.02 1.94 16 42 H 0.12 3.29 7.98 -2.39 -0.02 3.27 16 43 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 44 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 45 H 0.11 1.64 8.01 -2.38 -0.02 1.62 16 46 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.40 4.45 9.08 -74.06 -0.67 3.78 16 Total: -1.00 -77.62 385.87 -3.88 -81.50 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: -1.15 Total: 37.14 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: 6.15 Total: 24.84 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -7.42 Total: -116.16 kcal Atomic # 8 Polarization: -69.37 SS G_CDS: -3.48 Total: -72.85 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -77.62 -3.88 -81.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099621627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.617 kcal (2) G-P(sol) polarization free energy of solvation -77.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds