Wall clock time and date at job start Tue Mar 31 2020 04:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99855 * 2 1 4 4 C 1.53000 * 109.47092 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.46977 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00286 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99924 * 179.97438 * 5 4 3 8 8 C 1.46507 * 120.00094 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.57433 * 325.15711 * 8 7 5 10 10 C 1.53124 * 109.55495 * 85.29912 * 8 7 5 11 11 C 1.53035 * 109.30822 * 177.51870 * 10 8 7 12 12 N 1.46853 * 109.52528 * 300.84363 * 11 10 8 13 13 C 1.46896 * 111.00131 * 185.84074 * 12 11 10 14 14 C 1.50700 * 109.47118 * 169.43194 * 13 12 11 15 15 O 1.21287 * 119.99820 * 353.78113 * 14 13 12 16 16 N 1.34777 * 119.99778 * 173.78397 * 14 13 12 17 17 C 1.37101 * 119.99750 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99855 * 359.97438 * 17 16 14 19 19 C 1.38943 * 119.99939 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00136 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47283 * 89.99825 * 21 19 17 23 23 H 1.48504 * 109.47614 * 209.99802 * 21 19 17 24 24 H 1.48498 * 109.47224 * 330.00162 * 21 19 17 25 25 C 1.46848 * 111.19923 * 61.73811 * 12 11 10 26 26 C 1.53041 * 109.52455 * 298.26102 * 25 12 11 27 27 H 1.08995 * 109.50254 * 299.19774 * 26 25 12 28 28 O 1.42900 * 109.50150 * 179.11560 * 26 25 12 29 29 H 1.09003 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47018 * 299.99647 * 1 2 3 31 31 H 1.08995 * 109.47134 * 60.00109 * 1 2 3 32 32 H 1.08996 * 109.47190 * 59.99844 * 3 2 1 33 33 H 1.09003 * 109.47232 * 300.00250 * 3 2 1 34 34 H 1.09002 * 109.46854 * 60.00331 * 4 3 2 35 35 H 1.08994 * 109.47255 * 299.99881 * 4 3 2 36 36 H 0.96998 * 120.00281 * 0.02562 * 7 5 4 37 37 H 1.08998 * 109.47180 * 57.58317 * 10 8 7 38 38 H 1.08993 * 109.53598 * 297.49791 * 10 8 7 39 39 H 1.08999 * 109.46481 * 180.82426 * 11 10 8 40 40 H 1.09003 * 109.45275 * 60.84636 * 11 10 8 41 41 H 1.08999 * 109.46746 * 289.42746 * 13 12 11 42 42 H 1.08996 * 109.47475 * 49.42801 * 13 12 11 43 43 H 0.97000 * 120.00656 * 359.97438 * 16 14 13 44 44 H 0.97007 * 119.99961 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.46333 * 178.24185 * 25 12 11 46 46 H 1.09000 * 109.45679 * 58.27541 * 25 12 11 47 47 H 0.96703 * 113.99663 * 60.08334 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1483 2.5614 -0.0013 6 8 3.4355 3.5426 -0.0017 7 7 5.4887 2.7023 -0.0014 8 6 6.0846 4.0407 -0.0014 9 1 5.4631 4.7171 -0.5881 10 6 6.1851 4.5570 1.4366 11 6 6.8644 5.9284 1.4356 12 7 8.2032 5.8125 0.8433 13 6 8.9382 7.0798 0.9512 14 6 10.3806 6.8575 0.5759 15 8 10.7850 5.7345 0.3601 16 7 11.2214 7.9065 0.4801 17 6 12.5335 7.7043 0.1381 18 1 12.8936 6.7044 -0.0541 19 6 13.4002 8.7858 0.0388 20 7 12.9620 10.0026 0.2722 21 14 15.1882 8.5103 -0.4264 22 1 15.3316 8.5778 -1.9030 23 1 16.0305 9.5601 0.2011 24 1 15.6241 7.1740 0.0525 25 6 8.1291 5.3643 -0.5532 26 6 7.4876 3.9761 -0.6115 27 1 8.0972 3.2696 -0.0483 28 8 7.3969 3.5492 -1.9722 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8463 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6439 -0.8909 35 1 3.8575 0.6436 0.8891 36 1 6.0589 1.9176 -0.0014 37 1 6.7739 3.8598 2.0327 38 1 5.1859 4.6463 1.8625 39 1 6.9505 6.2918 2.4596 40 1 6.2680 6.6285 0.8506 41 1 8.4966 7.8143 0.2778 42 1 8.8817 7.4464 1.9761 43 1 10.8980 8.8046 0.6523 44 1 13.5669 10.7577 0.2025 45 1 9.1337 5.3181 -0.9736 46 1 7.5267 6.0673 -1.1286 47 1 8.2504 3.4868 -2.4225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099621628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:56 Heat of formation + Delta-G solvation = -165.129132 kcal Electronic energy + Delta-G solvation = -28334.254080 eV Core-core repulsion = 24131.098420 eV Total energy + Delta-G solvation = -4203.155660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.40270 -39.20494 -38.15309 -37.76596 -36.04312 -34.84069 -33.90028 -32.45271 -31.37215 -31.04374 -29.61411 -27.46813 -26.76676 -24.84890 -23.87671 -23.14830 -22.30386 -20.58951 -19.96146 -19.23310 -17.92091 -17.67065 -17.25314 -16.74751 -16.62838 -16.09821 -16.04381 -15.35517 -15.25598 -15.16503 -14.90036 -14.60737 -14.03310 -13.91951 -13.83303 -13.66678 -13.41933 -13.29681 -12.94858 -12.65130 -12.36205 -12.26958 -11.94715 -11.78550 -11.65605 -11.54242 -11.50139 -11.28857 -11.17429 -11.01755 -10.52715 -10.42512 -10.25680 -10.14312 -10.04301 -9.89599 -9.51851 -9.20316 -8.51889 -8.02960 -7.94753 -6.45375 -3.86516 2.43915 2.74826 3.14749 3.24002 3.29354 3.60576 3.76121 3.85985 4.07981 4.23063 4.44799 4.65086 4.70284 4.81721 4.94203 4.97890 4.99357 5.01661 5.08569 5.17258 5.17657 5.21661 5.27363 5.29370 5.42070 5.47330 5.47997 5.61253 5.66704 5.77589 5.83417 5.90018 5.94476 6.11877 6.21122 6.23640 6.34071 6.74555 7.12405 7.23183 7.31616 7.51314 7.61112 8.02050 8.02345 8.57355 9.13987 9.50308 10.01466 10.72179 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.039565 B = 0.001927 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.533783 B =14528.316029 C =14930.234033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.140 4.140 5 C 0.519 3.481 6 O -0.546 6.546 7 N -0.714 5.714 8 C 0.154 3.846 9 H 0.091 0.909 10 C -0.122 4.122 11 C 0.054 3.946 12 N -0.512 5.512 13 C 0.046 3.954 14 C 0.442 3.558 15 O -0.580 6.580 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.028 3.972 26 C 0.105 3.895 27 H 0.072 0.928 28 O -0.566 6.566 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.403 0.597 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.105 0.895 46 H 0.034 0.966 47 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.446 -13.948 0.472 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.001 4.001 4 C -0.180 4.180 5 C 0.306 3.694 6 O -0.423 6.423 7 N -0.364 5.364 8 C 0.049 3.951 9 H 0.109 0.891 10 C -0.161 4.161 11 C -0.074 4.074 12 N -0.238 5.238 13 C -0.085 4.085 14 C 0.228 3.772 15 O -0.464 6.464 16 N -0.200 5.200 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.101 4.101 26 C 0.045 3.955 27 H 0.090 0.910 28 O -0.372 6.372 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.237 0.763 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.123 0.877 46 H 0.052 0.948 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -19.848 -14.350 0.716 24.503 hybrid contribution 1.030 1.132 -0.657 1.666 sum -18.818 -13.218 0.059 22.997 Atomic orbital electron populations 1.22734 0.80573 1.02740 1.00250 1.87798 1.20094 1.28086 1.95583 1.22159 0.91921 0.84155 1.01816 1.21469 0.95471 0.95302 1.05777 1.20354 0.82390 0.90992 0.75687 1.90713 1.60973 1.40779 1.49858 1.45904 1.06451 1.09250 1.74812 1.21057 0.93116 0.84369 0.96543 0.89108 1.21922 1.01104 0.97289 0.95741 1.22119 0.88844 0.96099 1.00363 1.61456 1.15114 1.29766 1.17439 1.21858 0.94327 0.90076 1.02208 1.19723 0.86840 0.85813 0.84865 1.90485 1.77615 1.23140 1.55152 1.41885 1.09494 1.08042 1.60533 1.19689 0.84443 0.95404 1.43448 0.87901 1.25264 1.00526 0.94657 0.97437 1.69613 1.36801 0.98489 1.49269 0.85859 0.81678 0.78180 0.78567 1.20428 1.20911 1.19416 1.22828 1.02781 0.95044 0.89405 1.21981 0.94697 0.95867 0.82921 0.90979 1.86461 1.35878 1.89960 1.24901 0.89536 0.93930 0.93919 0.92354 0.92362 0.87928 0.87965 0.76284 0.90406 0.90414 0.89974 0.94675 0.93372 0.88987 0.77471 0.91836 0.87715 0.94773 0.76818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.40 -3.68 10.70 -35.23 -0.38 -4.05 16 3 C 0.08 0.70 5.23 37.16 0.19 0.89 16 4 C -0.14 -1.13 6.07 -27.88 -0.17 -1.30 16 5 C 0.52 5.73 7.80 -10.99 -0.09 5.64 16 6 O -0.55 -7.98 15.65 5.55 0.09 -7.90 16 7 N -0.71 -7.28 4.99 -53.68 -0.27 -7.55 16 8 C 0.15 1.87 2.20 -67.80 -0.15 1.73 16 9 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 10 C -0.12 -1.41 5.67 -26.65 -0.15 -1.56 16 11 C 0.05 0.69 5.46 -3.83 -0.02 0.67 16 12 N -0.51 -8.05 4.35 -236.11 -1.03 -9.08 16 13 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 14 C 0.44 10.00 7.31 -10.99 -0.08 9.92 16 15 O -0.58 -14.82 14.28 5.55 0.08 -14.74 16 16 N -0.56 -13.85 5.29 -10.97 -0.06 -13.91 16 17 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 18 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 21 Si 0.93 20.65 29.55 -169.99 -5.02 15.62 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 C 0.03 0.43 4.74 -3.83 -0.02 0.41 16 26 C 0.11 1.34 3.14 -26.65 -0.08 1.26 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 O -0.57 -6.91 13.23 -35.23 -0.47 -7.37 16 29 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.40 3.21 8.61 -40.82 -0.35 2.86 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 0.95 8.01 -51.93 -0.42 0.53 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 42 H 0.09 1.42 7.98 -51.93 -0.41 1.01 16 43 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.10 1.90 6.05 -51.93 -0.31 1.58 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.38 3.57 9.08 45.56 0.41 3.98 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -33.33 388.08 -7.00 -40.32 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -6.80 Total: 14.22 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 0.28 Total: 11.96 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.63 Total: -53.91 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.68 Total: -34.06 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.33 -7.00 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099621628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.805 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds