Wall clock time and date at job start Tue Mar 31 2020 04:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99855 * 2 1 4 4 C 1.53000 * 109.47092 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.46977 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00286 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99924 * 179.97438 * 5 4 3 8 8 C 1.46507 * 120.00094 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.57433 * 325.15711 * 8 7 5 10 10 C 1.53124 * 109.55495 * 85.29912 * 8 7 5 11 11 C 1.53035 * 109.30822 * 177.51870 * 10 8 7 12 12 N 1.46853 * 109.52528 * 300.84363 * 11 10 8 13 13 C 1.46896 * 111.00131 * 185.84074 * 12 11 10 14 14 C 1.50700 * 109.47118 * 169.43194 * 13 12 11 15 15 O 1.21287 * 119.99820 * 353.78113 * 14 13 12 16 16 N 1.34777 * 119.99778 * 173.78397 * 14 13 12 17 17 C 1.37101 * 119.99750 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99855 * 359.97438 * 17 16 14 19 19 C 1.38943 * 119.99939 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00136 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47283 * 89.99825 * 21 19 17 23 23 H 1.48504 * 109.47614 * 209.99802 * 21 19 17 24 24 H 1.48498 * 109.47224 * 330.00162 * 21 19 17 25 25 C 1.46848 * 111.19923 * 61.73811 * 12 11 10 26 26 C 1.53041 * 109.52455 * 298.26102 * 25 12 11 27 27 H 1.08995 * 109.50254 * 299.19774 * 26 25 12 28 28 O 1.42900 * 109.50150 * 179.11560 * 26 25 12 29 29 H 1.09003 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47018 * 299.99647 * 1 2 3 31 31 H 1.08995 * 109.47134 * 60.00109 * 1 2 3 32 32 H 1.08996 * 109.47190 * 59.99844 * 3 2 1 33 33 H 1.09003 * 109.47232 * 300.00250 * 3 2 1 34 34 H 1.09002 * 109.46854 * 60.00331 * 4 3 2 35 35 H 1.08994 * 109.47255 * 299.99881 * 4 3 2 36 36 H 0.96998 * 120.00281 * 0.02562 * 7 5 4 37 37 H 1.08998 * 109.47180 * 57.58317 * 10 8 7 38 38 H 1.08993 * 109.53598 * 297.49791 * 10 8 7 39 39 H 1.08999 * 109.46481 * 180.82426 * 11 10 8 40 40 H 1.09003 * 109.45275 * 60.84636 * 11 10 8 41 41 H 1.08999 * 109.46746 * 289.42746 * 13 12 11 42 42 H 1.08996 * 109.47475 * 49.42801 * 13 12 11 43 43 H 0.97000 * 120.00656 * 359.97438 * 16 14 13 44 44 H 0.97007 * 119.99961 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.46333 * 178.24185 * 25 12 11 46 46 H 1.09000 * 109.45679 * 58.27541 * 25 12 11 47 47 H 0.96703 * 113.99663 * 60.08334 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1483 2.5614 -0.0013 6 8 3.4355 3.5426 -0.0017 7 7 5.4887 2.7023 -0.0014 8 6 6.0846 4.0407 -0.0014 9 1 5.4631 4.7171 -0.5881 10 6 6.1851 4.5570 1.4366 11 6 6.8644 5.9284 1.4356 12 7 8.2032 5.8125 0.8433 13 6 8.9382 7.0798 0.9512 14 6 10.3806 6.8575 0.5759 15 8 10.7850 5.7345 0.3601 16 7 11.2214 7.9065 0.4801 17 6 12.5335 7.7043 0.1381 18 1 12.8936 6.7044 -0.0541 19 6 13.4002 8.7858 0.0388 20 7 12.9620 10.0026 0.2722 21 14 15.1882 8.5103 -0.4264 22 1 15.3316 8.5778 -1.9030 23 1 16.0305 9.5601 0.2011 24 1 15.6241 7.1740 0.0525 25 6 8.1291 5.3643 -0.5532 26 6 7.4876 3.9761 -0.6115 27 1 8.0972 3.2696 -0.0483 28 8 7.3969 3.5492 -1.9722 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8463 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6439 -0.8909 35 1 3.8575 0.6436 0.8891 36 1 6.0589 1.9176 -0.0014 37 1 6.7739 3.8598 2.0327 38 1 5.1859 4.6463 1.8625 39 1 6.9505 6.2918 2.4596 40 1 6.2680 6.6285 0.8506 41 1 8.4966 7.8143 0.2778 42 1 8.8817 7.4464 1.9761 43 1 10.8980 8.8046 0.6523 44 1 13.5669 10.7577 0.2025 45 1 9.1337 5.3181 -0.9736 46 1 7.5267 6.0673 -1.1286 47 1 8.2504 3.4868 -2.4225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099621628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:53 Heat of formation + Delta-G solvation = -194.698354 kcal Electronic energy + Delta-G solvation = -28335.536297 eV Core-core repulsion = 24131.098420 eV Total energy + Delta-G solvation = -4204.437878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.39686 -40.46995 -39.44943 -38.65740 -37.19120 -36.03270 -35.65891 -33.38273 -33.18524 -32.08104 -30.72089 -28.75852 -27.50180 -26.43879 -24.95552 -24.16957 -23.37603 -21.50220 -21.07550 -20.90015 -19.86651 -18.49731 -18.26376 -17.81201 -17.63046 -17.29485 -16.89235 -16.63934 -16.49378 -16.22413 -15.96564 -15.79538 -15.53698 -15.34433 -15.10471 -14.78169 -14.60085 -14.22980 -13.99381 -13.86822 -13.62173 -13.51531 -13.21857 -12.95161 -12.83901 -12.71159 -12.40928 -12.40066 -12.36846 -12.20659 -12.15010 -12.11319 -11.63027 -11.42612 -11.14829 -10.89631 -10.68430 -10.28346 -10.12551 -9.98522 -9.29631 -8.45261 -5.93745 1.38673 1.42865 1.55168 1.58617 1.95085 2.06676 2.28288 2.61630 2.93238 3.07974 3.21945 3.38010 3.68731 3.75657 3.92442 3.96195 4.04773 4.10370 4.14797 4.19941 4.32527 4.38660 4.45873 4.51791 4.52016 4.54001 4.55060 4.64317 4.75665 4.79900 4.81647 4.83984 4.85706 4.89878 4.94471 5.18592 5.42133 5.42661 5.81683 6.02127 6.11542 6.13446 6.50735 6.61677 6.71347 7.14274 7.19814 7.58212 8.13067 8.72051 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.039565 B = 0.001927 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.533783 B =14528.316029 C =14930.234033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.078 3.922 4 C -0.131 4.131 5 C 0.519 3.481 6 O -0.585 6.585 7 N -0.705 5.705 8 C 0.159 3.841 9 H 0.068 0.932 10 C -0.113 4.113 11 C 0.055 3.945 12 N -0.523 5.523 13 C 0.056 3.944 14 C 0.443 3.557 15 O -0.611 6.611 16 N -0.575 5.575 17 C -0.331 4.331 18 H 0.081 0.919 19 C -0.013 4.013 20 N -0.921 5.921 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.273 1.273 24 H -0.272 1.272 25 C 0.032 3.968 26 C 0.117 3.883 27 H 0.074 0.926 28 O -0.572 6.572 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.416 0.584 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.116 0.884 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.072 0.928 46 H 0.032 0.968 47 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.047 -14.862 0.961 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.001 3.999 4 C -0.170 4.170 5 C 0.307 3.693 6 O -0.465 6.465 7 N -0.356 5.356 8 C 0.053 3.947 9 H 0.087 0.913 10 C -0.151 4.151 11 C -0.073 4.073 12 N -0.250 5.250 13 C -0.075 4.075 14 C 0.230 3.770 15 O -0.497 6.497 16 N -0.212 5.212 17 C -0.460 4.460 18 H 0.099 0.901 19 C -0.213 4.213 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.197 1.197 25 C -0.097 4.097 26 C 0.057 3.943 27 H 0.092 0.908 28 O -0.379 6.379 29 H 0.121 0.879 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.252 0.748 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.050 0.950 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -20.454 -15.284 1.204 25.562 hybrid contribution 1.142 1.368 -0.832 1.967 sum -19.312 -13.916 0.371 23.807 Atomic orbital electron populations 1.22940 0.79277 1.04052 1.00775 1.87768 1.21607 1.27951 1.95636 1.22102 0.92645 0.84145 1.01054 1.21433 0.94578 0.93509 1.07524 1.20843 0.82204 0.91675 0.74601 1.90699 1.61811 1.42308 1.51708 1.45800 1.06539 1.08990 1.74258 1.20872 0.92173 0.85052 0.96559 0.91339 1.21849 1.01263 0.96764 0.95270 1.22213 0.87119 0.96974 1.01002 1.61448 1.16890 1.29004 1.17617 1.21752 0.90629 0.91343 1.03729 1.20685 0.88725 0.84795 0.82808 1.90460 1.78869 1.24402 1.55972 1.41954 1.09181 1.08674 1.61426 1.19664 0.86134 0.94884 1.45362 0.90081 1.26019 1.04145 0.94233 0.96902 1.69678 1.38122 0.98977 1.49462 0.84937 0.76964 0.78034 0.78465 1.19757 1.19776 1.19672 1.22732 1.01042 0.96672 0.89286 1.21813 0.94873 0.94261 0.83332 0.90846 1.86440 1.37042 1.89703 1.24716 0.87885 0.93331 0.93513 0.92945 0.93434 0.86401 0.85795 0.74762 0.89825 0.89895 0.88302 0.94297 0.91824 0.86643 0.77128 0.91403 0.90914 0.94987 0.75450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.01 10.70 -148.98 -1.59 -8.60 16 3 C 0.08 1.33 5.23 71.98 0.38 1.71 16 4 C -0.13 -1.86 6.07 29.85 0.18 -1.68 16 5 C 0.52 10.74 7.80 87.66 0.68 11.43 16 6 O -0.58 -16.82 15.65 -3.04 -0.05 -16.87 16 7 N -0.71 -13.24 4.99 -442.13 -2.21 -15.45 16 8 C 0.16 3.69 2.20 45.07 0.10 3.79 16 9 H 0.07 1.95 7.58 -2.39 -0.02 1.93 16 10 C -0.11 -2.41 5.67 30.65 0.17 -2.24 16 11 C 0.05 1.28 5.46 86.32 0.47 1.75 16 12 N -0.52 -15.90 4.35 -900.92 -3.92 -19.81 16 13 C 0.06 1.88 5.45 85.56 0.47 2.35 16 14 C 0.44 20.21 7.31 87.66 0.64 20.85 16 15 O -0.61 -31.89 14.28 -3.05 -0.04 -31.93 16 16 N -0.57 -28.73 5.29 -306.99 -1.62 -30.35 16 17 C -0.33 -18.34 9.68 84.04 0.81 -17.53 16 18 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 19 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 20 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 21 Si 0.99 42.25 29.55 68.60 2.03 44.27 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 C 0.03 0.97 4.74 86.33 0.41 1.38 16 26 C 0.12 2.91 3.14 30.65 0.10 3.00 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 O -0.57 -13.49 13.23 -148.98 -1.97 -15.47 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 33 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 34 H 0.12 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.42 5.72 8.61 -92.71 -0.80 4.92 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.10 2.00 8.01 -2.39 -0.02 1.99 16 40 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 42 H 0.12 3.33 7.98 -2.39 -0.02 3.31 16 43 H 0.40 18.91 7.90 -92.71 -0.73 18.17 16 44 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 45 H 0.07 2.70 6.05 -2.39 -0.01 2.68 16 46 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.40 7.17 9.08 -74.06 -0.67 6.50 16 Total: -1.00 -72.18 388.08 -4.16 -76.35 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -1.20 Total: 40.64 kcal Atomic # 6 Polarization: 19.99 SS G_CDS: 6.13 Total: 26.11 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -7.46 Total: -114.50 kcal Atomic # 8 Polarization: -69.21 SS G_CDS: -3.66 Total: -72.87 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -72.18 -4.16 -76.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099621628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.352 kcal (2) G-P(sol) polarization free energy of solvation -72.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds