Wall clock time and date at job start Tue Mar 31 2020 04:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00452 * 2 1 4 4 C 1.52999 * 109.47341 * 179.97438 * 3 2 1 5 5 C 1.50710 * 109.46959 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99649 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99942 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00045 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.57392 * 325.16267 * 8 7 5 10 10 C 1.53127 * 109.52211 * 85.31753 * 8 7 5 11 11 C 1.53033 * 109.27887 * 177.56297 * 10 8 7 12 12 N 1.46854 * 109.52117 * 300.81829 * 11 10 8 13 13 C 1.46897 * 111.00044 * 185.83923 * 12 11 10 14 14 C 1.50695 * 109.47098 * 169.43596 * 13 12 11 15 15 O 1.21298 * 120.00201 * 353.77841 * 14 13 12 16 16 N 1.34784 * 120.00245 * 173.78497 * 14 13 12 17 17 C 1.37089 * 120.00156 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00197 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00178 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99501 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00251 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47217 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47194 * 120.00259 * 21 19 17 24 24 H 1.48501 * 109.47584 * 240.00030 * 21 19 17 25 25 C 1.46853 * 111.19516 * 61.74442 * 12 11 10 26 26 C 1.53036 * 109.52152 * 298.25707 * 25 12 11 27 27 H 1.09005 * 109.49811 * 179.12299 * 26 25 12 28 28 O 1.42906 * 109.50336 * 299.19836 * 26 25 12 29 29 H 1.09002 * 109.47164 * 300.00118 * 1 2 3 30 30 H 1.09002 * 109.46962 * 59.99948 * 1 2 3 31 31 H 1.08999 * 109.47349 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47001 * 59.99464 * 3 2 1 33 33 H 1.08998 * 109.46860 * 300.00200 * 3 2 1 34 34 H 1.09000 * 109.46867 * 60.00304 * 4 3 2 35 35 H 1.08998 * 109.47369 * 299.99965 * 4 3 2 36 36 H 0.96999 * 119.99403 * 0.02562 * 7 5 4 37 37 H 1.09005 * 109.50069 * 297.50333 * 10 8 7 38 38 H 1.08999 * 109.50050 * 57.61913 * 10 8 7 39 39 H 1.08996 * 109.46215 * 180.80469 * 11 10 8 40 40 H 1.08999 * 109.46293 * 60.83275 * 11 10 8 41 41 H 1.09001 * 109.47149 * 289.43761 * 13 12 11 42 42 H 1.09000 * 109.47007 * 49.43515 * 13 12 11 43 43 H 0.97000 * 119.99461 * 359.97438 * 16 14 13 44 44 H 0.97000 * 119.99671 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.46140 * 58.27243 * 25 12 11 46 46 H 1.09004 * 109.45962 * 178.24542 * 25 12 11 47 47 H 0.96694 * 113.99823 * 300.00096 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1485 2.5613 0.0000 6 8 3.4356 3.5425 -0.0004 7 7 5.4889 2.7022 -0.0001 8 6 6.0848 4.0405 -0.0002 9 1 5.4632 4.7169 -0.5868 10 6 6.1854 4.5559 1.4383 11 6 6.8638 5.9276 1.4372 12 7 8.2025 5.8126 0.8447 13 6 8.9367 7.0803 0.9525 14 6 10.3792 6.8590 0.5768 15 8 10.7843 5.7362 0.3609 16 7 11.2193 7.9086 0.4809 17 6 12.5317 7.7071 0.1397 18 1 12.8926 6.7074 -0.0519 19 6 13.3977 8.7892 0.0402 20 7 12.9587 10.0056 0.2738 21 14 15.1861 8.5147 -0.4240 22 1 15.4263 7.0642 -0.6329 23 1 15.4912 9.2518 -1.6765 24 1 16.0626 9.0099 0.6676 25 6 8.1284 5.3645 -0.5519 26 6 7.4877 3.9760 -0.6101 27 1 7.4186 3.6504 -1.6481 28 8 8.2876 3.0501 0.1281 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8574 0.6435 -0.8891 35 1 3.8568 0.6438 0.8908 36 1 6.0589 1.9174 -0.0001 37 1 5.1858 4.6445 1.8638 38 1 6.7747 3.8589 2.0341 39 1 6.9498 6.2910 2.4612 40 1 6.2668 6.6275 0.8525 41 1 8.4944 7.8147 0.2793 42 1 8.8803 7.4468 1.9775 43 1 10.8953 8.8064 0.6533 44 1 13.5634 10.7610 0.2047 45 1 7.5254 6.0671 -1.1271 46 1 9.1329 5.3189 -0.9724 47 1 9.1919 2.9608 -0.2025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099621629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:01 Heat of formation + Delta-G solvation = -163.031624 kcal Electronic energy + Delta-G solvation = -28467.368897 eV Core-core repulsion = 24264.304191 eV Total energy + Delta-G solvation = -4203.064705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.40471 -39.20373 -38.14408 -37.74670 -35.60224 -34.72250 -33.87154 -32.43637 -31.32734 -30.98636 -29.76205 -27.44751 -26.76118 -24.82809 -23.85780 -23.12550 -22.32894 -20.49812 -19.86624 -19.21421 -17.89748 -17.65973 -16.78572 -16.71520 -16.63845 -16.08155 -15.98542 -15.49014 -15.21872 -15.10904 -14.71053 -14.50553 -14.34305 -13.88832 -13.79656 -13.72127 -13.40402 -13.16198 -12.89093 -12.62301 -12.28131 -12.07860 -11.81122 -11.76596 -11.57702 -11.54252 -11.41920 -11.36712 -11.10505 -11.03293 -10.54609 -10.36546 -10.24755 -10.07349 -10.04893 -9.74726 -9.50701 -9.15193 -8.44487 -7.98950 -7.85119 -6.43759 -3.84600 2.41095 2.74817 3.14421 3.25255 3.31801 3.60238 3.88980 3.91359 4.18509 4.33796 4.45351 4.66127 4.71350 4.80785 4.83032 4.97449 4.99779 5.00822 5.13441 5.15933 5.21715 5.23720 5.28511 5.41363 5.41648 5.46436 5.51322 5.63569 5.76430 5.77533 5.84688 5.92525 6.00525 6.14479 6.26715 6.31763 6.42266 6.73560 7.23607 7.32561 7.37360 7.53136 7.85760 8.02032 8.04527 8.59789 9.16141 9.52873 10.04238 10.74034 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.042794 B = 0.001933 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.145677 B =14482.680816 C =14875.661025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.140 4.140 5 C 0.517 3.483 6 O -0.547 6.547 7 N -0.715 5.715 8 C 0.153 3.847 9 H 0.093 0.907 10 C -0.119 4.119 11 C 0.058 3.942 12 N -0.503 5.503 13 C 0.045 3.955 14 C 0.444 3.556 15 O -0.578 6.578 16 N -0.565 5.565 17 C -0.299 4.299 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.024 3.976 26 C 0.109 3.891 27 H 0.058 0.942 28 O -0.552 6.552 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.408 0.592 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.030 0.970 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.032 0.968 46 H 0.105 0.895 47 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.002 -13.901 -1.136 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C 0.000 4.000 4 C -0.180 4.180 5 C 0.303 3.697 6 O -0.425 6.425 7 N -0.366 5.366 8 C 0.049 3.951 9 H 0.111 0.889 10 C -0.158 4.158 11 C -0.071 4.071 12 N -0.228 5.228 13 C -0.086 4.086 14 C 0.229 3.771 15 O -0.462 6.462 16 N -0.202 5.202 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.104 4.104 26 C 0.049 3.951 27 H 0.076 0.924 28 O -0.358 6.358 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.244 0.756 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.123 0.877 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -20.306 -14.356 -0.687 24.878 hybrid contribution 0.895 1.252 -0.860 1.763 sum -19.411 -13.103 -1.547 23.471 Atomic orbital electron populations 1.22735 0.80567 1.02751 1.00243 1.87799 1.20096 1.28081 1.95579 1.22160 0.91924 0.84163 1.01802 1.21473 0.95444 0.95308 1.05817 1.20411 0.82489 0.91009 0.75813 1.90713 1.61020 1.40767 1.49973 1.45973 1.06292 1.09728 1.74625 1.21118 0.91992 0.84115 0.97885 0.88906 1.21859 1.00347 0.97242 0.96349 1.22074 0.88835 0.96087 1.00086 1.61421 1.15056 1.28983 1.17291 1.21876 0.94402 0.90314 1.02038 1.19737 0.86854 0.85779 0.84682 1.90473 1.77582 1.23140 1.54980 1.41898 1.09500 1.08047 1.60729 1.19736 0.84449 0.95386 1.43242 0.87858 1.25264 1.00497 0.94671 0.97542 1.69623 1.36650 0.98481 1.49518 0.85805 0.81907 0.78664 0.77980 1.19243 1.20820 1.20754 1.22879 1.02879 0.95097 0.89582 1.21932 0.89732 0.89583 0.93854 0.92396 1.86332 1.27745 1.62290 1.59478 0.93918 0.93937 0.89528 0.92347 0.92389 0.88002 0.87884 0.75634 0.91460 0.89783 0.90360 0.95190 0.93666 0.89185 0.77524 0.91928 0.94979 0.87661 0.76326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.40 -3.62 10.70 -35.23 -0.38 -4.00 16 3 C 0.08 0.68 5.23 37.16 0.19 0.87 16 4 C -0.14 -1.11 6.07 -27.88 -0.17 -1.28 16 5 C 0.52 5.52 7.80 -10.98 -0.09 5.44 16 6 O -0.55 -7.75 15.64 5.56 0.09 -7.66 16 7 N -0.72 -7.22 5.05 -53.69 -0.27 -7.49 16 8 C 0.15 1.83 2.31 -67.81 -0.16 1.67 16 9 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 10 C -0.12 -1.51 5.52 -26.65 -0.15 -1.66 16 11 C 0.06 0.78 5.46 -3.83 -0.02 0.76 16 12 N -0.50 -8.10 4.23 -236.11 -1.00 -9.10 16 13 C 0.04 0.79 5.45 -4.98 -0.03 0.76 16 14 C 0.44 10.09 7.31 -10.98 -0.08 10.01 16 15 O -0.58 -14.66 14.28 5.54 0.08 -14.58 16 16 N -0.57 -13.97 5.29 -10.96 -0.06 -14.03 16 17 C -0.30 -8.13 9.68 -14.94 -0.14 -8.28 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 21 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.02 0.37 4.78 -3.83 -0.02 0.35 16 26 C 0.11 1.34 3.42 -26.66 -0.09 1.25 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 O -0.55 -7.17 12.06 -35.23 -0.43 -7.59 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.41 3.50 8.12 -40.82 -0.33 3.17 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.18 7.80 -51.93 -0.41 0.77 16 39 H 0.08 0.99 8.01 -51.93 -0.42 0.58 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 42 H 0.09 1.45 7.98 -51.93 -0.41 1.04 16 43 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.11 1.87 6.05 -51.93 -0.31 1.56 16 47 H 0.39 4.67 9.08 45.56 0.41 5.09 16 LS Contribution 386.29 15.07 5.82 5.82 Total: -1.00 -32.59 386.29 -6.93 -39.52 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -6.76 Total: 15.24 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 0.27 Total: 11.69 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.60 Total: -54.15 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.64 Total: -33.83 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.59 -6.93 -39.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099621629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.511 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds