Wall clock time and date at job start Tue Mar 31 2020 04:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00452 * 2 1 4 4 C 1.52999 * 109.47341 * 179.97438 * 3 2 1 5 5 C 1.50710 * 109.46959 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99649 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99942 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00045 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.57392 * 325.16267 * 8 7 5 10 10 C 1.53127 * 109.52211 * 85.31753 * 8 7 5 11 11 C 1.53033 * 109.27887 * 177.56297 * 10 8 7 12 12 N 1.46854 * 109.52117 * 300.81829 * 11 10 8 13 13 C 1.46897 * 111.00044 * 185.83923 * 12 11 10 14 14 C 1.50695 * 109.47098 * 169.43596 * 13 12 11 15 15 O 1.21298 * 120.00201 * 353.77841 * 14 13 12 16 16 N 1.34784 * 120.00245 * 173.78497 * 14 13 12 17 17 C 1.37089 * 120.00156 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00197 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00178 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99501 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00251 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47217 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47194 * 120.00259 * 21 19 17 24 24 H 1.48501 * 109.47584 * 240.00030 * 21 19 17 25 25 C 1.46853 * 111.19516 * 61.74442 * 12 11 10 26 26 C 1.53036 * 109.52152 * 298.25707 * 25 12 11 27 27 H 1.09005 * 109.49811 * 179.12299 * 26 25 12 28 28 O 1.42906 * 109.50336 * 299.19836 * 26 25 12 29 29 H 1.09002 * 109.47164 * 300.00118 * 1 2 3 30 30 H 1.09002 * 109.46962 * 59.99948 * 1 2 3 31 31 H 1.08999 * 109.47349 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47001 * 59.99464 * 3 2 1 33 33 H 1.08998 * 109.46860 * 300.00200 * 3 2 1 34 34 H 1.09000 * 109.46867 * 60.00304 * 4 3 2 35 35 H 1.08998 * 109.47369 * 299.99965 * 4 3 2 36 36 H 0.96999 * 119.99403 * 0.02562 * 7 5 4 37 37 H 1.09005 * 109.50069 * 297.50333 * 10 8 7 38 38 H 1.08999 * 109.50050 * 57.61913 * 10 8 7 39 39 H 1.08996 * 109.46215 * 180.80469 * 11 10 8 40 40 H 1.08999 * 109.46293 * 60.83275 * 11 10 8 41 41 H 1.09001 * 109.47149 * 289.43761 * 13 12 11 42 42 H 1.09000 * 109.47007 * 49.43515 * 13 12 11 43 43 H 0.97000 * 119.99461 * 359.97438 * 16 14 13 44 44 H 0.97000 * 119.99671 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.46140 * 58.27243 * 25 12 11 46 46 H 1.09004 * 109.45962 * 178.24542 * 25 12 11 47 47 H 0.96694 * 113.99823 * 300.00096 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1485 2.5613 0.0000 6 8 3.4356 3.5425 -0.0004 7 7 5.4889 2.7022 -0.0001 8 6 6.0848 4.0405 -0.0002 9 1 5.4632 4.7169 -0.5868 10 6 6.1854 4.5559 1.4383 11 6 6.8638 5.9276 1.4372 12 7 8.2025 5.8126 0.8447 13 6 8.9367 7.0803 0.9525 14 6 10.3792 6.8590 0.5768 15 8 10.7843 5.7362 0.3609 16 7 11.2193 7.9086 0.4809 17 6 12.5317 7.7071 0.1397 18 1 12.8926 6.7074 -0.0519 19 6 13.3977 8.7892 0.0402 20 7 12.9587 10.0056 0.2738 21 14 15.1861 8.5147 -0.4240 22 1 15.4263 7.0642 -0.6329 23 1 15.4912 9.2518 -1.6765 24 1 16.0626 9.0099 0.6676 25 6 8.1284 5.3645 -0.5519 26 6 7.4877 3.9760 -0.6101 27 1 7.4186 3.6504 -1.6481 28 8 8.2876 3.0501 0.1281 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8574 0.6435 -0.8891 35 1 3.8568 0.6438 0.8908 36 1 6.0589 1.9174 -0.0001 37 1 5.1858 4.6445 1.8638 38 1 6.7747 3.8589 2.0341 39 1 6.9498 6.2910 2.4612 40 1 6.2668 6.6275 0.8525 41 1 8.4944 7.8147 0.2793 42 1 8.8803 7.4468 1.9775 43 1 10.8953 8.8064 0.6533 44 1 13.5634 10.7610 0.2047 45 1 7.5254 6.0671 -1.1271 46 1 9.1329 5.3189 -0.9724 47 1 9.1919 2.9608 -0.2025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099621629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:59 Heat of formation + Delta-G solvation = -191.525462 kcal Electronic energy + Delta-G solvation = -28468.604482 eV Core-core repulsion = 24264.304191 eV Total energy + Delta-G solvation = -4204.300291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38509 -40.45241 -39.43365 -38.65649 -36.81026 -35.91474 -35.58594 -33.33989 -33.16544 -32.03734 -30.86013 -28.73764 -27.49595 -26.41843 -24.92469 -24.17027 -23.39808 -21.38173 -21.01823 -20.84581 -19.85612 -18.45016 -17.83480 -17.79374 -17.59227 -17.29323 -16.80711 -16.68451 -16.52314 -16.02400 -15.95854 -15.77788 -15.49729 -15.45656 -15.17179 -14.88769 -14.49294 -14.13812 -14.06109 -13.73025 -13.57595 -13.38707 -13.08946 -12.87981 -12.84376 -12.55319 -12.50999 -12.40117 -12.36927 -12.16697 -12.14312 -12.09773 -11.65170 -11.41841 -10.99664 -10.78669 -10.67889 -10.23290 -10.07023 -9.96615 -9.16045 -8.44433 -5.92512 1.37761 1.43157 1.56851 1.57949 1.96586 2.08751 2.29307 2.70585 2.94910 3.22600 3.25856 3.46661 3.68637 3.76740 3.82343 4.01408 4.04427 4.12083 4.14844 4.32717 4.35633 4.43886 4.48655 4.52099 4.52318 4.55493 4.58473 4.66437 4.71948 4.80383 4.83319 4.85007 4.85930 4.93597 4.93699 5.29718 5.43584 5.46206 5.88786 6.08464 6.13935 6.19719 6.54022 6.63250 6.85774 7.15829 7.20303 7.60068 8.15090 8.73306 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.042794 B = 0.001933 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.145677 B =14482.680816 C =14875.661025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.078 3.922 4 C -0.132 4.132 5 C 0.518 3.482 6 O -0.583 6.583 7 N -0.707 5.707 8 C 0.157 3.843 9 H 0.088 0.912 10 C -0.110 4.110 11 C 0.059 3.941 12 N -0.519 5.519 13 C 0.055 3.945 14 C 0.445 3.555 15 O -0.606 6.606 16 N -0.577 5.577 17 C -0.328 4.328 18 H 0.082 0.918 19 C -0.015 4.015 20 N -0.923 5.923 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.273 1.273 24 H -0.274 1.274 25 C 0.025 3.975 26 C 0.117 3.883 27 H 0.078 0.922 28 O -0.558 6.558 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.418 0.582 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.394 0.606 44 H 0.276 0.724 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.766 -14.647 -1.224 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.001 3.999 4 C -0.172 4.172 5 C 0.306 3.694 6 O -0.464 6.464 7 N -0.358 5.358 8 C 0.052 3.948 9 H 0.106 0.894 10 C -0.149 4.149 11 C -0.069 4.069 12 N -0.244 5.244 13 C -0.076 4.076 14 C 0.232 3.768 15 O -0.492 6.492 16 N -0.215 5.215 17 C -0.458 4.458 18 H 0.100 0.900 19 C -0.214 4.214 20 N -0.564 5.564 21 Si 0.816 3.184 22 H -0.196 1.196 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.104 4.104 26 C 0.057 3.943 27 H 0.095 0.905 28 O -0.365 6.365 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.255 0.745 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.228 0.772 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -21.083 -15.120 -0.771 25.956 hybrid contribution 1.053 1.433 -0.822 1.960 sum -20.030 -13.687 -1.593 24.312 Atomic orbital electron populations 1.22938 0.79277 1.04033 1.00786 1.87769 1.21607 1.28015 1.95638 1.22108 0.92595 0.84130 1.01108 1.21440 0.94608 0.93632 1.07471 1.20850 0.82237 0.91643 0.74712 1.90700 1.61774 1.42202 1.51706 1.45874 1.06368 1.09381 1.74152 1.20964 0.91625 0.84976 0.97238 0.89419 1.21757 1.00004 0.96546 0.96631 1.22130 0.87466 0.96847 1.00491 1.61398 1.16606 1.28235 1.18114 1.21750 0.90905 0.91653 1.03276 1.20668 0.88665 0.84811 0.82685 1.90450 1.78767 1.24291 1.55670 1.41966 1.09192 1.08657 1.61672 1.19701 0.86113 0.94852 1.45112 0.90040 1.26022 1.04137 0.94246 0.97022 1.69687 1.38003 0.98990 1.49746 0.84875 0.77125 0.78299 0.78068 1.19604 1.19827 1.19894 1.22840 1.01473 0.97030 0.89090 1.21901 0.89511 0.87974 0.94910 0.90477 1.86311 1.28064 1.62262 1.59912 0.93431 0.93376 0.87936 0.93178 0.93066 0.86100 0.86302 0.74532 0.91185 0.91035 0.89520 0.94104 0.91870 0.87439 0.77232 0.91464 0.94000 0.90832 0.75998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -6.91 10.70 -148.98 -1.59 -8.50 16 3 C 0.08 1.29 5.23 71.98 0.38 1.67 16 4 C -0.13 -1.82 6.07 29.85 0.18 -1.64 16 5 C 0.52 10.27 7.80 87.66 0.68 10.96 16 6 O -0.58 -16.00 15.64 -3.03 -0.05 -16.04 16 7 N -0.71 -13.01 5.05 -442.16 -2.23 -15.24 16 8 C 0.16 3.51 2.31 45.07 0.10 3.61 16 9 H 0.09 2.11 7.58 -2.39 -0.02 2.09 16 10 C -0.11 -2.64 5.52 30.65 0.17 -2.47 16 11 C 0.06 1.47 5.46 86.32 0.47 1.94 16 12 N -0.52 -16.16 4.23 -900.93 -3.81 -19.97 16 13 C 0.06 1.88 5.45 85.56 0.47 2.35 16 14 C 0.44 20.38 7.31 87.65 0.64 21.03 16 15 O -0.61 -31.41 14.28 -3.09 -0.04 -31.45 16 16 N -0.58 -29.00 5.29 -306.98 -1.62 -30.62 16 17 C -0.33 -18.24 9.68 84.04 0.81 -17.43 16 18 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 19 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 20 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 21 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 C 0.02 0.72 4.78 86.32 0.41 1.13 16 26 C 0.12 2.74 3.42 30.64 0.10 2.84 16 27 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 28 O -0.56 -13.98 12.06 -148.98 -1.80 -15.78 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 33 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 34 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.42 6.26 8.12 -92.71 -0.75 5.50 16 37 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.07 1.91 7.80 -2.39 -0.02 1.89 16 39 H 0.09 2.03 8.01 -2.39 -0.02 2.01 16 40 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 42 H 0.11 3.29 7.98 -2.39 -0.02 3.28 16 43 H 0.39 19.04 7.90 -92.71 -0.73 18.30 16 44 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 45 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.07 2.65 6.05 -2.39 -0.01 2.63 16 47 H 0.39 9.33 9.08 -74.06 -0.67 8.65 16 Total: -1.00 -70.05 386.29 -3.85 -73.90 By element: Atomic # 1 Polarization: 44.45 SS G_CDS: -1.15 Total: 43.30 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 6.14 Total: 25.19 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -7.38 Total: -115.08 kcal Atomic # 8 Polarization: -68.30 SS G_CDS: -3.48 Total: -71.78 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -70.05 -3.85 -73.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099621629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.626 kcal (2) G-P(sol) polarization free energy of solvation -70.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds