Wall clock time and date at job start Tue Mar 31 2020 04:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.47113 * 2 1 4 4 C 1.42903 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.46878 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.52611 * 34.87696 * 8 7 5 10 10 C 1.53120 * 109.52424 * 274.68391 * 8 7 5 11 11 C 1.53042 * 109.27588 * 182.44342 * 10 8 7 12 12 N 1.46841 * 109.52393 * 59.18064 * 11 10 8 13 13 C 1.46898 * 111.00000 * 174.15569 * 12 11 10 14 14 C 1.50699 * 109.47479 * 294.21701 * 13 12 11 15 15 O 1.21297 * 120.00002 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00369 * 180.02562 * 14 13 12 17 17 C 1.37089 * 120.00086 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00506 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00090 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99590 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47026 * 90.00118 * 21 19 17 23 23 H 1.48504 * 109.46728 * 209.99808 * 21 19 17 24 24 H 1.48499 * 109.46932 * 329.99719 * 21 19 17 25 25 C 1.46839 * 111.20019 * 298.25696 * 12 11 10 26 26 C 1.53037 * 109.52520 * 61.73862 * 25 12 11 27 27 H 1.09007 * 109.50031 * 60.76159 * 26 25 12 28 28 O 1.42897 * 109.50600 * 180.87909 * 26 25 12 29 29 H 1.08997 * 109.46502 * 300.00085 * 1 2 3 30 30 H 1.08998 * 109.46733 * 60.00191 * 1 2 3 31 31 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46516 * 239.99933 * 2 1 3 33 33 H 1.09004 * 109.47113 * 120.00401 * 2 1 3 34 34 H 1.09002 * 109.47382 * 59.99956 * 4 3 2 35 35 H 1.09001 * 109.46938 * 299.99942 * 4 3 2 36 36 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 37 37 H 1.08992 * 109.50219 * 302.38524 * 10 8 7 38 38 H 1.09001 * 109.50330 * 62.50790 * 10 8 7 39 39 H 1.08996 * 109.46317 * 299.16166 * 11 10 8 40 40 H 1.09006 * 109.46092 * 179.19964 * 11 10 8 41 41 H 1.09005 * 109.47033 * 54.21240 * 13 12 11 42 42 H 1.08997 * 109.47117 * 174.21093 * 13 12 11 43 43 H 0.97001 * 119.99389 * 359.97438 * 16 14 13 44 44 H 0.97001 * 119.99430 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.46144 * 301.72596 * 25 12 11 46 46 H 1.09000 * 109.46346 * 181.76077 * 25 12 11 47 47 H 0.96700 * 114.00185 * 299.80892 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8196 2.9161 -0.0012 6 8 2.9611 3.7728 -0.0006 7 7 5.1211 3.2661 -0.0013 8 6 5.4989 4.6816 -0.0012 9 1 4.7785 5.2509 0.5863 10 6 5.5168 5.2064 -1.4396 11 6 5.9709 6.6679 -1.4384 12 7 7.3111 6.7650 -0.8462 13 6 7.8365 8.1325 -0.9541 14 6 8.0544 8.4739 -2.4057 15 8 7.7977 7.6580 -3.2658 16 7 8.5355 9.6854 -2.7483 17 6 8.7342 9.9957 -4.0687 18 1 8.5056 9.2693 -4.8346 19 6 9.2297 11.2450 -4.4219 20 7 9.5083 12.1287 -3.4900 21 14 9.4997 11.6681 -6.2212 22 1 8.2643 12.2761 -6.7775 23 1 10.6228 12.6324 -6.3397 24 1 9.8267 10.4321 -6.9767 25 6 7.3087 6.3108 0.5502 26 6 6.8946 4.8387 0.6085 27 1 7.6078 4.2374 0.0446 28 8 6.8726 4.4028 1.9692 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 3.8334 0.9766 -0.8908 35 1 3.8341 0.9763 0.8892 36 1 5.8077 2.5809 -0.0013 37 1 6.2083 4.6110 -2.0356 38 1 4.5157 5.1368 -1.8649 39 1 5.2713 7.2651 -0.8537 40 1 5.9984 7.0405 -2.4625 41 1 7.1219 8.8317 -0.5198 42 1 8.7834 8.2012 -0.4186 43 1 8.7412 10.3377 -2.0604 44 1 9.8538 13.0009 -3.7366 45 1 6.6028 6.9097 1.1257 46 1 8.3080 6.4239 0.9706 47 1 7.7256 4.4744 2.4190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099632557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:48 Heat of formation + Delta-G solvation = -159.716409 kcal Electronic energy + Delta-G solvation = -28343.362979 eV Core-core repulsion = 24140.442032 eV Total energy + Delta-G solvation = -4202.920947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.35821 -39.21440 -38.14887 -37.63212 -36.06215 -34.80633 -33.86464 -32.10631 -31.53585 -31.12443 -29.67850 -28.26208 -26.67964 -24.53872 -23.22529 -23.13670 -22.56919 -20.69734 -20.07215 -19.23850 -17.92318 -17.48720 -17.38933 -17.24831 -16.73267 -16.13103 -16.08602 -15.26565 -15.11527 -14.85694 -14.66111 -14.39774 -14.11503 -14.00396 -13.68170 -13.47249 -13.34748 -13.15515 -12.93814 -12.75261 -12.65368 -12.41563 -11.95560 -11.75726 -11.61061 -11.56318 -11.39242 -11.27959 -11.10638 -10.79368 -10.55568 -10.39724 -10.29550 -10.22488 -10.05305 -9.83335 -9.49571 -9.14929 -8.48456 -8.00770 -7.90903 -6.42936 -3.83693 2.48876 2.56931 3.17121 3.26011 3.31548 3.67341 3.68823 3.88228 4.06853 4.23894 4.50053 4.62398 4.65369 4.74037 4.85817 4.86442 4.88406 4.97492 4.98119 5.03892 5.23716 5.24908 5.29816 5.34706 5.47275 5.54784 5.60016 5.68393 5.73998 5.78195 5.81501 5.89720 6.01912 6.21682 6.26746 6.39093 6.47814 6.70939 7.17586 7.22644 7.34997 7.45590 7.54235 8.04870 8.10081 8.60131 9.16806 9.52826 10.04299 10.74712 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.002084 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.608721 B =13430.624224 C =14397.323446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.364 6.364 4 C 0.046 3.954 5 C 0.514 3.486 6 O -0.519 6.519 7 N -0.716 5.716 8 C 0.156 3.844 9 H 0.091 0.909 10 C -0.120 4.120 11 C 0.052 3.948 12 N -0.512 5.512 13 C 0.047 3.953 14 C 0.443 3.557 15 O -0.577 6.577 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.027 3.973 26 C 0.103 3.897 27 H 0.072 0.928 28 O -0.563 6.563 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.400 0.600 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.027 0.973 40 H 0.111 0.889 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.041 0.959 46 H 0.081 0.919 47 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.416 -21.093 11.931 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.034 4.034 5 C 0.299 3.701 6 O -0.393 6.393 7 N -0.369 5.369 8 C 0.052 3.948 9 H 0.109 0.891 10 C -0.159 4.159 11 C -0.076 4.076 12 N -0.238 5.238 13 C -0.084 4.084 14 C 0.228 3.772 15 O -0.461 6.461 16 N -0.200 5.200 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.103 4.103 26 C 0.044 3.956 27 H 0.090 0.910 28 O -0.368 6.368 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.234 0.766 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.046 0.954 40 H 0.129 0.871 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.099 0.901 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -8.612 -21.092 10.935 25.271 hybrid contribution 1.041 0.832 0.224 1.351 sum -7.571 -20.260 11.159 24.338 Atomic orbital electron populations 1.21734 0.93361 1.02232 1.03551 1.22554 0.96048 0.83352 1.00159 1.88036 1.18464 1.26354 1.95420 1.22177 0.84038 0.94697 1.02531 1.20201 0.82729 0.90527 0.76657 1.90744 1.49278 1.51679 1.47636 1.45779 1.06825 1.08464 1.75806 1.21077 0.95026 0.81582 0.97121 0.89073 1.21922 1.02329 0.96801 0.94799 1.22287 0.87195 0.95257 1.02882 1.61496 1.24550 1.23136 1.14616 1.21840 1.00415 0.88716 0.97460 1.19697 0.84494 0.83574 0.89392 1.90487 1.55841 1.48883 1.50934 1.41862 1.56677 1.12657 1.08769 1.19696 1.40236 0.99306 0.83601 0.87879 1.25266 0.97149 0.95596 0.99929 1.69615 1.44730 1.06820 1.33100 0.85857 0.77904 0.78428 0.82096 1.20422 1.20940 1.19416 1.22752 1.01545 0.95406 0.90572 1.22015 0.96439 0.94522 0.82672 0.90977 1.86548 1.37745 1.87594 1.24947 0.91674 0.91615 0.90968 0.93152 0.93217 0.90259 0.90313 0.76606 0.90341 0.90433 0.95432 0.87055 0.93251 0.89263 0.77487 0.91873 0.94032 0.90084 0.77340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.41 6.66 37.16 0.25 0.66 16 3 O -0.36 -4.16 9.88 -55.14 -0.54 -4.70 16 4 C 0.05 0.41 6.42 36.01 0.23 0.64 16 5 C 0.51 6.44 7.88 -10.98 -0.09 6.35 16 6 O -0.52 -9.05 16.16 -14.35 -0.23 -9.28 16 7 N -0.72 -7.54 4.99 -53.69 -0.27 -7.81 16 8 C 0.16 1.96 2.20 -67.81 -0.15 1.81 16 9 H 0.09 1.37 7.58 -51.93 -0.39 0.97 16 10 C -0.12 -1.69 5.67 -26.65 -0.15 -1.84 16 11 C 0.05 0.85 5.10 -3.83 -0.02 0.83 16 12 N -0.51 -8.11 4.40 -236.12 -1.04 -9.15 16 13 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 14 C 0.44 10.18 7.46 -10.98 -0.08 10.09 16 15 O -0.58 -15.07 13.90 5.54 0.08 -14.99 16 16 N -0.56 -14.02 5.29 -10.96 -0.06 -14.07 16 17 C -0.30 -8.22 9.68 -14.94 -0.14 -8.37 16 18 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 19 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 20 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 21 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 25 C 0.03 0.32 5.09 -3.84 -0.02 0.30 16 26 C 0.10 1.11 3.14 -26.65 -0.08 1.02 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 28 O -0.56 -5.35 13.23 -35.23 -0.47 -5.82 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.40 2.98 8.61 -40.82 -0.35 2.63 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 2.21 5.78 -51.93 -0.30 1.91 16 41 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 42 H 0.09 1.36 7.99 -51.93 -0.41 0.95 16 43 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.83 8.02 -51.93 -0.42 0.42 16 47 H 0.38 2.01 9.08 45.56 0.41 2.42 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -35.42 388.54 -7.76 -43.18 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -6.79 Total: 12.34 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 0.00 Total: 12.13 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.64 Total: -54.62 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.17 Total: -34.79 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.42 -7.76 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099632557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.536 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds