Wall clock time and date at job start Tue Mar 31 2020 04:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.47113 * 2 1 4 4 C 1.42903 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.46878 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.52611 * 34.87696 * 8 7 5 10 10 C 1.53120 * 109.52424 * 274.68391 * 8 7 5 11 11 C 1.53042 * 109.27588 * 182.44342 * 10 8 7 12 12 N 1.46841 * 109.52393 * 59.18064 * 11 10 8 13 13 C 1.46898 * 111.00000 * 174.15569 * 12 11 10 14 14 C 1.50699 * 109.47479 * 294.21701 * 13 12 11 15 15 O 1.21297 * 120.00002 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00369 * 180.02562 * 14 13 12 17 17 C 1.37089 * 120.00086 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00506 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00090 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99590 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47026 * 90.00118 * 21 19 17 23 23 H 1.48504 * 109.46728 * 209.99808 * 21 19 17 24 24 H 1.48499 * 109.46932 * 329.99719 * 21 19 17 25 25 C 1.46839 * 111.20019 * 298.25696 * 12 11 10 26 26 C 1.53037 * 109.52520 * 61.73862 * 25 12 11 27 27 H 1.09007 * 109.50031 * 60.76159 * 26 25 12 28 28 O 1.42897 * 109.50600 * 180.87909 * 26 25 12 29 29 H 1.08997 * 109.46502 * 300.00085 * 1 2 3 30 30 H 1.08998 * 109.46733 * 60.00191 * 1 2 3 31 31 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46516 * 239.99933 * 2 1 3 33 33 H 1.09004 * 109.47113 * 120.00401 * 2 1 3 34 34 H 1.09002 * 109.47382 * 59.99956 * 4 3 2 35 35 H 1.09001 * 109.46938 * 299.99942 * 4 3 2 36 36 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 37 37 H 1.08992 * 109.50219 * 302.38524 * 10 8 7 38 38 H 1.09001 * 109.50330 * 62.50790 * 10 8 7 39 39 H 1.08996 * 109.46317 * 299.16166 * 11 10 8 40 40 H 1.09006 * 109.46092 * 179.19964 * 11 10 8 41 41 H 1.09005 * 109.47033 * 54.21240 * 13 12 11 42 42 H 1.08997 * 109.47117 * 174.21093 * 13 12 11 43 43 H 0.97001 * 119.99389 * 359.97438 * 16 14 13 44 44 H 0.97001 * 119.99430 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.46144 * 301.72596 * 25 12 11 46 46 H 1.09000 * 109.46346 * 181.76077 * 25 12 11 47 47 H 0.96700 * 114.00185 * 299.80892 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8196 2.9161 -0.0012 6 8 2.9611 3.7728 -0.0006 7 7 5.1211 3.2661 -0.0013 8 6 5.4989 4.6816 -0.0012 9 1 4.7785 5.2509 0.5863 10 6 5.5168 5.2064 -1.4396 11 6 5.9709 6.6679 -1.4384 12 7 7.3111 6.7650 -0.8462 13 6 7.8365 8.1325 -0.9541 14 6 8.0544 8.4739 -2.4057 15 8 7.7977 7.6580 -3.2658 16 7 8.5355 9.6854 -2.7483 17 6 8.7342 9.9957 -4.0687 18 1 8.5056 9.2693 -4.8346 19 6 9.2297 11.2450 -4.4219 20 7 9.5083 12.1287 -3.4900 21 14 9.4997 11.6681 -6.2212 22 1 8.2643 12.2761 -6.7775 23 1 10.6228 12.6324 -6.3397 24 1 9.8267 10.4321 -6.9767 25 6 7.3087 6.3108 0.5502 26 6 6.8946 4.8387 0.6085 27 1 7.6078 4.2374 0.0446 28 8 6.8726 4.4028 1.9692 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 3.8334 0.9766 -0.8908 35 1 3.8341 0.9763 0.8892 36 1 5.8077 2.5809 -0.0013 37 1 6.2083 4.6110 -2.0356 38 1 4.5157 5.1368 -1.8649 39 1 5.2713 7.2651 -0.8537 40 1 5.9984 7.0405 -2.4625 41 1 7.1219 8.8317 -0.5198 42 1 8.7834 8.2012 -0.4186 43 1 8.7412 10.3377 -2.0604 44 1 9.8538 13.0009 -3.7366 45 1 6.6028 6.9097 1.1257 46 1 8.3080 6.4239 0.9706 47 1 7.7256 4.4744 2.4190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099632557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:47 Heat of formation + Delta-G solvation = -190.900793 kcal Electronic energy + Delta-G solvation = -28344.715236 eV Core-core repulsion = 24140.442032 eV Total energy + Delta-G solvation = -4204.273203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.38987 -40.47276 -39.51482 -38.51767 -37.14668 -35.97074 -35.71352 -33.35416 -32.92624 -32.22609 -30.72546 -29.32899 -27.93630 -26.26299 -24.30223 -23.82938 -23.64799 -21.67532 -21.17276 -20.98482 -19.87394 -18.39449 -18.28102 -18.07309 -17.69635 -17.39185 -17.03692 -16.61811 -16.40993 -16.24983 -15.81831 -15.69239 -15.55174 -15.25840 -15.07892 -14.71670 -14.23972 -14.04864 -13.98533 -13.85301 -13.63560 -13.48127 -13.26672 -13.24394 -12.91893 -12.60458 -12.52944 -12.39501 -12.32307 -12.18495 -12.15180 -12.08589 -11.59678 -11.44481 -11.12814 -10.84316 -10.66679 -10.28798 -10.12662 -9.97686 -9.30180 -8.45561 -5.93695 1.38142 1.42037 1.54449 1.55126 1.77411 2.06717 2.27782 2.60105 2.99685 3.14167 3.21282 3.37170 3.65308 3.76088 3.90994 3.96110 4.11969 4.16370 4.17159 4.20966 4.31352 4.32342 4.35257 4.39641 4.48769 4.50817 4.52189 4.63380 4.68469 4.76497 4.82598 4.91563 5.01862 5.02681 5.17470 5.26324 5.39489 5.42330 5.82197 6.02141 6.10683 6.12152 6.54063 6.61940 6.87470 7.14478 7.21924 7.58159 8.13871 8.71774 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.002084 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.608721 B =13430.624224 C =14397.323446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.406 6.406 4 C 0.049 3.951 5 C 0.506 3.494 6 O -0.578 6.578 7 N -0.701 5.701 8 C 0.160 3.840 9 H 0.064 0.936 10 C -0.108 4.108 11 C 0.056 3.944 12 N -0.522 5.522 13 C 0.058 3.942 14 C 0.441 3.559 15 O -0.612 6.612 16 N -0.574 5.574 17 C -0.331 4.331 18 H 0.079 0.921 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.273 1.273 25 C 0.026 3.974 26 C 0.118 3.882 27 H 0.087 0.913 28 O -0.568 6.568 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.419 0.581 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.119 0.881 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.040 0.960 46 H 0.109 0.891 47 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.132 -22.905 13.235 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.325 6.325 4 C -0.030 4.030 5 C 0.294 3.706 6 O -0.457 6.457 7 N -0.354 5.354 8 C 0.054 3.946 9 H 0.083 0.917 10 C -0.147 4.147 11 C -0.072 4.072 12 N -0.248 5.248 13 C -0.073 4.073 14 C 0.229 3.771 15 O -0.498 6.498 16 N -0.212 5.212 17 C -0.460 4.460 18 H 0.097 0.903 19 C -0.213 4.213 20 N -0.562 5.562 21 Si 0.815 3.185 22 H -0.199 1.199 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.102 4.102 26 C 0.058 3.942 27 H 0.105 0.895 28 O -0.376 6.376 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.256 0.744 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.137 0.863 43 H 0.230 0.770 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.128 0.872 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.277 -22.941 12.282 27.020 hybrid contribution 0.613 1.331 -0.127 1.471 sum -6.664 -21.610 12.155 25.674 Atomic orbital electron populations 1.21790 0.93515 1.03471 1.02288 1.22782 0.96061 0.81942 1.01856 1.87992 1.19873 1.28858 1.95807 1.22305 0.83403 0.91923 1.05380 1.21027 0.82503 0.91916 0.75197 1.90718 1.50913 1.53613 1.50477 1.45627 1.06987 1.08102 1.74652 1.20844 0.95865 0.82427 0.95428 0.91745 1.21748 1.01206 0.95512 0.96243 1.22092 0.88000 0.96538 1.00599 1.61451 1.23775 1.22198 1.17334 1.21740 1.02407 0.90003 0.93188 1.20738 0.82307 0.82353 0.91745 1.90468 1.56649 1.49767 1.52924 1.41927 1.57630 1.13581 1.08059 1.19648 1.42136 0.99696 0.84548 0.90276 1.26014 0.96368 0.95018 1.03910 1.69675 1.44744 1.07102 1.34635 0.84948 0.78180 0.78074 0.77258 1.19903 1.19554 1.19733 1.22900 1.03264 0.96082 0.87982 1.21747 0.94899 0.93870 0.83647 0.89539 1.86518 1.39730 1.87237 1.24100 0.92827 0.92997 0.88453 0.91493 0.91295 0.87283 0.87117 0.74392 0.90251 0.92035 0.95586 0.91111 0.91814 0.86287 0.77039 0.91381 0.94172 0.87240 0.74820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.99 0.74 -1.21 16 2 C 0.05 0.64 6.66 71.99 0.48 1.12 16 3 O -0.41 -8.91 9.88 -129.94 -1.28 -10.19 16 4 C 0.05 0.77 6.42 71.24 0.46 1.22 16 5 C 0.51 12.39 7.88 87.66 0.69 13.08 16 6 O -0.58 -20.88 16.16 16.01 0.26 -20.62 16 7 N -0.70 -13.71 4.99 -442.15 -2.21 -15.92 16 8 C 0.16 3.89 2.20 45.07 0.10 3.99 16 9 H 0.06 1.96 7.58 -2.38 -0.02 1.94 16 10 C -0.11 -3.12 5.67 30.65 0.17 -2.94 16 11 C 0.06 1.89 5.10 86.33 0.44 2.33 16 12 N -0.52 -15.96 4.40 -900.95 -3.96 -19.92 16 13 C 0.06 1.92 5.45 85.56 0.47 2.39 16 14 C 0.44 20.58 7.46 87.66 0.65 21.24 16 15 O -0.61 -33.02 13.90 -3.08 -0.04 -33.06 16 16 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 17 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 18 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 19 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 20 N -0.92 -49.54 13.05 21.66 0.28 -49.25 16 21 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C 0.03 0.56 5.09 86.33 0.44 1.00 16 26 C 0.12 2.23 3.14 30.65 0.10 2.32 16 27 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 28 O -0.57 -8.83 13.23 -148.98 -1.97 -10.80 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.42 5.03 8.61 -92.71 -0.80 4.23 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 2.98 5.78 -2.38 -0.01 2.96 16 41 H 0.06 1.98 8.12 -2.38 -0.02 1.96 16 42 H 0.12 3.30 7.99 -2.39 -0.02 3.28 16 43 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 44 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 45 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 46 H 0.11 1.78 8.02 -2.39 -0.02 1.76 16 47 H 0.40 2.54 9.08 -74.06 -0.67 1.87 16 Total: -1.00 -80.80 388.54 -3.70 -84.50 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: -1.20 Total: 34.59 kcal Atomic # 6 Polarization: 20.42 SS G_CDS: 6.02 Total: 26.44 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -7.51 Total: -115.86 kcal Atomic # 8 Polarization: -71.65 SS G_CDS: -3.04 Total: -74.69 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -80.80 -3.70 -84.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099632557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.399 kcal (2) G-P(sol) polarization free energy of solvation -80.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds