Wall clock time and date at job start Tue Mar 31 2020 04:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47349 * 2 1 4 4 C 1.42907 * 114.00193 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47105 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00111 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99858 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99658 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.57778 * 35.15271 * 8 7 5 10 10 C 1.53117 * 109.52161 * 274.99553 * 8 7 5 11 11 C 1.53044 * 109.27792 * 297.75488 * 10 8 7 12 12 N 1.46847 * 109.51335 * 300.82256 * 11 10 8 13 13 C 1.46901 * 111.00144 * 185.83239 * 12 11 10 14 14 C 1.50704 * 109.46920 * 66.04700 * 13 12 11 15 15 O 1.21294 * 119.99853 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00066 * 179.97438 * 14 13 12 17 17 C 1.37102 * 120.00068 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99631 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99780 * 180.02562 * 17 16 14 20 20 N 1.31402 * 120.00045 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99592 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 59.99423 * 21 19 17 23 23 H 1.48498 * 109.46952 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47311 * 299.99653 * 21 19 17 25 25 C 1.46830 * 111.21086 * 61.74856 * 12 11 10 26 26 C 1.53038 * 109.51757 * 298.25173 * 25 12 11 27 27 H 1.08997 * 109.50308 * 299.23764 * 26 25 12 28 28 O 1.42898 * 109.53702 * 179.13515 * 26 25 12 29 29 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46923 * 299.99878 * 1 2 3 31 31 H 1.09000 * 109.47140 * 59.99541 * 1 2 3 32 32 H 1.09003 * 109.47377 * 240.00030 * 2 1 3 33 33 H 1.09000 * 109.47140 * 120.00459 * 2 1 3 34 34 H 1.09002 * 109.46989 * 59.99712 * 4 3 2 35 35 H 1.08995 * 109.46706 * 300.00107 * 4 3 2 36 36 H 0.96996 * 119.99461 * 359.97438 * 7 5 4 37 37 H 1.09001 * 109.50874 * 177.81668 * 10 8 7 38 38 H 1.09002 * 109.53469 * 57.70789 * 10 8 7 39 39 H 1.09002 * 109.46396 * 60.83566 * 11 10 8 40 40 H 1.08994 * 109.46485 * 180.81491 * 11 10 8 41 41 H 1.08999 * 109.47329 * 186.04739 * 13 12 11 42 42 H 1.08996 * 109.46902 * 306.05049 * 13 12 11 43 43 H 0.96998 * 119.99404 * 0.02562 * 16 14 13 44 44 H 0.96997 * 120.00129 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.46742 * 178.23410 * 25 12 11 46 46 H 1.09004 * 109.46459 * 58.26240 * 25 12 11 47 47 H 0.96693 * 113.99720 * 60.17622 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8196 2.9161 0.0001 6 8 2.9611 3.7728 0.0015 7 7 5.1211 3.2662 -0.0008 8 6 5.4988 4.6817 0.0004 9 1 4.7823 5.2504 0.5931 10 6 5.5078 5.2101 -1.4366 11 6 6.5586 4.4489 -2.2483 12 7 7.8795 4.6298 -1.6327 13 6 8.9331 4.0282 -2.4610 14 6 9.0386 4.7793 -3.7632 15 8 8.3082 5.7232 -3.9798 16 7 9.9451 4.4029 -4.6868 17 6 10.0414 5.0866 -5.8713 18 1 9.3905 5.9265 -6.0644 19 6 10.9757 4.6981 -6.8236 20 7 11.7673 3.6759 -6.5888 21 14 11.1064 5.6292 -8.4377 22 1 11.4421 7.0497 -8.1641 23 1 12.1719 5.0215 -9.2748 24 1 9.8094 5.5569 -9.1573 25 6 7.9088 4.0870 -0.2687 26 6 6.8983 4.8373 0.6019 27 1 7.1633 5.8939 0.6384 28 8 6.9121 4.2959 1.9243 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8334 0.9766 -0.8908 35 1 3.8340 0.9764 0.8891 36 1 5.8076 2.5810 -0.0015 37 1 5.7510 6.2726 -1.4323 38 1 4.5252 5.0633 -1.8851 39 1 6.3073 3.3883 -2.2639 40 1 6.5777 4.8326 -3.2683 41 1 9.8852 4.0812 -1.9329 42 1 8.6866 2.9857 -2.6618 43 1 10.5294 3.6484 -4.5133 44 1 12.4197 3.4050 -7.2534 45 1 8.9083 4.2076 0.1488 46 1 7.6512 3.0281 -0.2936 47 1 7.7694 4.3607 2.3669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099632558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:54 Heat of formation + Delta-G solvation = -157.095570 kcal Electronic energy + Delta-G solvation = -28826.936461 eV Core-core repulsion = 24624.129162 eV Total energy + Delta-G solvation = -4202.807299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.53991 -39.15865 -38.15777 -37.58392 -36.08272 -34.62019 -33.85467 -32.09274 -31.50168 -31.15371 -29.72352 -28.13959 -26.90939 -24.67412 -23.17281 -23.09950 -22.67248 -21.26841 -19.34239 -19.18601 -17.94498 -17.62469 -17.34902 -17.11319 -16.71186 -16.18263 -15.73718 -15.53320 -15.13035 -14.98341 -14.71033 -14.51072 -14.11804 -14.03482 -13.76819 -13.40947 -13.27312 -13.16991 -12.78650 -12.71332 -12.69607 -12.43005 -12.16624 -11.72936 -11.58183 -11.56998 -11.41264 -11.30415 -11.12901 -10.80809 -10.52066 -10.46550 -10.26750 -10.17522 -10.01499 -9.84182 -9.50632 -9.14736 -8.49765 -8.03495 -7.94031 -6.45457 -3.86312 2.52203 2.61663 3.17608 3.23709 3.27884 3.63119 3.76526 3.85264 4.04599 4.21109 4.53191 4.62235 4.68873 4.72137 4.78251 4.90542 4.92467 4.95801 5.01469 5.04499 5.20793 5.21921 5.32480 5.33199 5.43327 5.56224 5.58030 5.63230 5.74254 5.77211 5.80887 5.87358 5.95664 6.19609 6.25021 6.41857 6.45107 6.74218 7.14208 7.20517 7.36746 7.44169 7.51710 8.02100 8.12569 8.57366 9.14251 9.49875 10.01434 10.72121 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.002457 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.836084 B =11392.796800 C =12487.429719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.364 6.364 4 C 0.045 3.955 5 C 0.515 3.485 6 O -0.521 6.521 7 N -0.713 5.713 8 C 0.157 3.843 9 H 0.094 0.906 10 C -0.123 4.123 11 C 0.053 3.947 12 N -0.510 5.510 13 C 0.048 3.952 14 C 0.442 3.558 15 O -0.576 6.576 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.024 3.976 26 C 0.101 3.899 27 H 0.083 0.917 28 O -0.563 6.563 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.398 0.602 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 -9.032 16.347 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.282 6.282 4 C -0.035 4.035 5 C 0.300 3.700 6 O -0.395 6.395 7 N -0.367 5.367 8 C 0.053 3.947 9 H 0.112 0.888 10 C -0.162 4.162 11 C -0.075 4.075 12 N -0.236 5.236 13 C -0.084 4.084 14 C 0.227 3.773 15 O -0.460 6.460 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.105 4.105 26 C 0.042 3.958 27 H 0.101 0.899 28 O -0.368 6.368 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.052 0.948 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -12.284 -7.313 15.972 21.436 hybrid contribution 1.712 -1.545 -0.664 2.399 sum -10.572 -8.857 15.309 20.605 Atomic orbital electron populations 1.21729 0.93361 1.02233 1.03504 1.22554 0.96030 0.83367 1.00202 1.88026 1.18433 1.26354 1.95427 1.22178 0.84037 0.94793 1.02519 1.20169 0.82719 0.90489 0.76597 1.90727 1.49289 1.51653 1.47876 1.45822 1.06745 1.08563 1.75592 1.21040 0.94798 0.81824 0.97074 0.88782 1.21945 0.99448 1.01547 0.93222 1.22271 0.86856 0.97235 1.01092 1.61457 1.04237 1.57564 1.00339 1.21840 0.95571 0.96186 0.94757 1.19695 0.84642 0.87500 0.85424 1.90497 1.45418 1.30599 1.79494 1.41858 1.32540 1.30291 1.15276 1.19648 1.18254 1.12900 0.92071 0.87926 1.25260 0.95948 0.96771 0.99940 1.69595 1.21910 1.26350 1.36475 0.85917 0.77947 0.79435 0.80932 1.19861 1.20989 1.19898 1.22797 1.00005 0.96679 0.91020 1.22063 0.94127 0.97970 0.81668 0.89947 1.86541 1.37749 1.84660 1.27820 0.90968 0.91704 0.91621 0.93122 0.93226 0.90312 0.90362 0.76683 0.89462 0.90359 0.95907 0.87415 0.89313 0.93477 0.77527 0.91805 0.90212 0.94806 0.77337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.36 -4.35 9.88 -55.14 -0.54 -4.90 16 4 C 0.04 0.44 6.42 36.01 0.23 0.67 16 5 C 0.52 6.68 7.87 -10.98 -0.09 6.59 16 6 O -0.52 -9.04 16.17 -14.35 -0.23 -9.27 16 7 N -0.71 -7.93 4.17 -53.69 -0.22 -8.16 16 8 C 0.16 1.92 2.51 -67.81 -0.17 1.75 16 9 H 0.09 1.29 7.59 -51.93 -0.39 0.90 16 10 C -0.12 -1.70 5.76 -26.65 -0.15 -1.86 16 11 C 0.05 0.82 4.96 -3.83 -0.02 0.80 16 12 N -0.51 -7.66 4.39 -236.12 -1.04 -8.69 16 13 C 0.05 0.78 5.45 -4.97 -0.03 0.76 16 14 C 0.44 9.95 7.46 -10.98 -0.08 9.87 16 15 O -0.58 -14.89 13.92 5.55 0.08 -14.81 16 16 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 17 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 18 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16 21 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 C 0.02 0.26 4.93 -3.84 -0.02 0.24 16 26 C 0.10 1.06 3.35 -26.65 -0.09 0.97 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 28 O -0.56 -5.19 13.15 -35.23 -0.46 -5.65 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.40 3.63 7.01 -40.82 -0.29 3.34 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.33 7.69 -51.93 -0.40 -0.07 16 40 H 0.11 2.09 5.80 -51.93 -0.30 1.79 16 41 H 0.09 1.30 7.98 -51.93 -0.41 0.89 16 42 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 43 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 46 H 0.03 0.34 6.64 -51.93 -0.34 -0.01 16 47 H 0.38 1.94 9.08 45.56 0.41 2.35 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -34.63 384.42 -7.64 -42.27 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -6.62 Total: 12.86 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -0.03 Total: 11.99 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.59 Total: -54.02 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -1.16 Total: -34.63 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.63 -7.64 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099632558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.826 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds