Wall clock time and date at job start Tue Mar 31 2020 04:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47349 * 2 1 4 4 C 1.42907 * 114.00193 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47105 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00111 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99858 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99658 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.57778 * 35.15271 * 8 7 5 10 10 C 1.53117 * 109.52161 * 274.99553 * 8 7 5 11 11 C 1.53044 * 109.27792 * 297.75488 * 10 8 7 12 12 N 1.46847 * 109.51335 * 300.82256 * 11 10 8 13 13 C 1.46901 * 111.00144 * 185.83239 * 12 11 10 14 14 C 1.50704 * 109.46920 * 66.04700 * 13 12 11 15 15 O 1.21294 * 119.99853 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00066 * 179.97438 * 14 13 12 17 17 C 1.37102 * 120.00068 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99631 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99780 * 180.02562 * 17 16 14 20 20 N 1.31402 * 120.00045 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99592 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 59.99423 * 21 19 17 23 23 H 1.48498 * 109.46952 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47311 * 299.99653 * 21 19 17 25 25 C 1.46830 * 111.21086 * 61.74856 * 12 11 10 26 26 C 1.53038 * 109.51757 * 298.25173 * 25 12 11 27 27 H 1.08997 * 109.50308 * 299.23764 * 26 25 12 28 28 O 1.42898 * 109.53702 * 179.13515 * 26 25 12 29 29 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46923 * 299.99878 * 1 2 3 31 31 H 1.09000 * 109.47140 * 59.99541 * 1 2 3 32 32 H 1.09003 * 109.47377 * 240.00030 * 2 1 3 33 33 H 1.09000 * 109.47140 * 120.00459 * 2 1 3 34 34 H 1.09002 * 109.46989 * 59.99712 * 4 3 2 35 35 H 1.08995 * 109.46706 * 300.00107 * 4 3 2 36 36 H 0.96996 * 119.99461 * 359.97438 * 7 5 4 37 37 H 1.09001 * 109.50874 * 177.81668 * 10 8 7 38 38 H 1.09002 * 109.53469 * 57.70789 * 10 8 7 39 39 H 1.09002 * 109.46396 * 60.83566 * 11 10 8 40 40 H 1.08994 * 109.46485 * 180.81491 * 11 10 8 41 41 H 1.08999 * 109.47329 * 186.04739 * 13 12 11 42 42 H 1.08996 * 109.46902 * 306.05049 * 13 12 11 43 43 H 0.96998 * 119.99404 * 0.02562 * 16 14 13 44 44 H 0.96997 * 120.00129 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.46742 * 178.23410 * 25 12 11 46 46 H 1.09004 * 109.46459 * 58.26240 * 25 12 11 47 47 H 0.96693 * 113.99720 * 60.17622 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8196 2.9161 0.0001 6 8 2.9611 3.7728 0.0015 7 7 5.1211 3.2662 -0.0008 8 6 5.4988 4.6817 0.0004 9 1 4.7823 5.2504 0.5931 10 6 5.5078 5.2101 -1.4366 11 6 6.5586 4.4489 -2.2483 12 7 7.8795 4.6298 -1.6327 13 6 8.9331 4.0282 -2.4610 14 6 9.0386 4.7793 -3.7632 15 8 8.3082 5.7232 -3.9798 16 7 9.9451 4.4029 -4.6868 17 6 10.0414 5.0866 -5.8713 18 1 9.3905 5.9265 -6.0644 19 6 10.9757 4.6981 -6.8236 20 7 11.7673 3.6759 -6.5888 21 14 11.1064 5.6292 -8.4377 22 1 11.4421 7.0497 -8.1641 23 1 12.1719 5.0215 -9.2748 24 1 9.8094 5.5569 -9.1573 25 6 7.9088 4.0870 -0.2687 26 6 6.8983 4.8373 0.6019 27 1 7.1633 5.8939 0.6384 28 8 6.9121 4.2959 1.9243 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8334 0.9766 -0.8908 35 1 3.8340 0.9764 0.8891 36 1 5.8076 2.5810 -0.0015 37 1 5.7510 6.2726 -1.4323 38 1 4.5252 5.0633 -1.8851 39 1 6.3073 3.3883 -2.2639 40 1 6.5777 4.8326 -3.2683 41 1 9.8852 4.0812 -1.9329 42 1 8.6866 2.9857 -2.6618 43 1 10.5294 3.6484 -4.5133 44 1 12.4197 3.4050 -7.2534 45 1 8.9083 4.2076 0.1488 46 1 7.6512 3.0281 -0.2936 47 1 7.7694 4.3607 2.3669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099632558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:53 Heat of formation + Delta-G solvation = -187.023767 kcal Electronic energy + Delta-G solvation = -28828.234245 eV Core-core repulsion = 24624.129162 eV Total energy + Delta-G solvation = -4204.105083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.57024 -40.39250 -39.52696 -38.48418 -37.10208 -35.95621 -35.53127 -33.32601 -32.92094 -32.20090 -30.71188 -29.25990 -28.04849 -26.40142 -24.20746 -23.90828 -23.68730 -22.21070 -21.02426 -20.29636 -19.85737 -18.53210 -18.23159 -17.94014 -17.68561 -17.43059 -16.76094 -16.63857 -16.53481 -16.23929 -15.99895 -15.70409 -15.51123 -15.34958 -15.17547 -14.51081 -14.26532 -14.02216 -13.97140 -13.75973 -13.63545 -13.46895 -13.33478 -13.24647 -12.93389 -12.58793 -12.48166 -12.41887 -12.33743 -12.18720 -12.15991 -12.10228 -11.47369 -11.42236 -11.08532 -10.85563 -10.68669 -10.30295 -10.09609 -9.96748 -9.21374 -8.45194 -5.92989 1.39863 1.42045 1.52189 1.55075 1.78959 2.08599 2.28317 2.62642 3.00745 3.16203 3.22099 3.38780 3.67530 3.75235 3.78904 4.05297 4.14231 4.14644 4.16778 4.22465 4.28434 4.33918 4.35500 4.39012 4.49418 4.52321 4.56959 4.62535 4.75106 4.80463 4.81962 4.93733 5.01728 5.04995 5.18471 5.25474 5.42482 5.42583 5.86392 6.05807 6.08277 6.17269 6.50291 6.63167 6.88094 7.15545 7.19649 7.59686 8.16048 8.71842 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.002457 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.836084 B =11392.796800 C =12487.429719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.403 6.403 4 C 0.047 3.953 5 C 0.508 3.492 6 O -0.575 6.575 7 N -0.700 5.700 8 C 0.160 3.840 9 H 0.076 0.924 10 C -0.114 4.114 11 C 0.062 3.938 12 N -0.527 5.527 13 C 0.061 3.939 14 C 0.439 3.561 15 O -0.614 6.614 16 N -0.575 5.575 17 C -0.330 4.330 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.989 3.011 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.274 1.274 25 C 0.027 3.973 26 C 0.115 3.885 27 H 0.080 0.920 28 O -0.566 6.566 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.412 0.588 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.117 0.883 42 H 0.070 0.930 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.104 0.896 46 H 0.053 0.947 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.471 -11.138 17.778 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.322 6.322 4 C -0.032 4.032 5 C 0.295 3.705 6 O -0.453 6.453 7 N -0.354 5.354 8 C 0.054 3.946 9 H 0.095 0.905 10 C -0.153 4.153 11 C -0.066 4.066 12 N -0.253 5.253 13 C -0.070 4.070 14 C 0.227 3.773 15 O -0.500 6.500 16 N -0.212 5.212 17 C -0.460 4.460 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.813 3.187 22 H -0.198 1.198 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.101 4.101 26 C 0.055 3.945 27 H 0.098 0.902 28 O -0.374 6.374 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.249 0.751 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.135 0.865 42 H 0.088 0.912 43 H 0.230 0.770 44 H 0.086 0.914 45 H 0.123 0.877 46 H 0.071 0.929 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -11.069 -9.466 17.441 22.722 hybrid contribution 1.303 -0.886 -1.030 1.882 sum -9.766 -10.352 16.411 21.722 Atomic orbital electron populations 1.21781 0.93320 1.03487 1.02370 1.22784 0.96200 0.81988 1.01751 1.87986 1.19684 1.28783 1.95781 1.22296 0.83510 0.92346 1.05065 1.20908 0.82541 0.91729 0.75290 1.90703 1.50760 1.53417 1.50451 1.45707 1.06754 1.08367 1.74549 1.20869 0.95889 0.82336 0.95459 0.90536 1.21789 0.98144 1.00944 0.94421 1.22025 0.87831 0.97771 0.98942 1.61346 1.03278 1.58756 1.01970 1.21718 0.97487 0.96073 0.91747 1.20849 0.82731 0.86914 0.86829 1.90484 1.46425 1.32455 1.80661 1.41921 1.33515 1.30583 1.15216 1.19580 1.18997 1.13348 0.94066 0.90480 1.25969 0.95274 0.97479 1.02514 1.69648 1.22065 1.26925 1.37436 0.85046 0.78077 0.78232 0.77345 1.19829 1.19536 1.19912 1.22889 1.01523 0.97479 0.88203 1.21770 0.92364 0.97976 0.82361 0.90227 1.86510 1.39667 1.84383 1.26866 0.88496 0.92628 0.92975 0.91784 0.91288 0.87911 0.87232 0.75060 0.90531 0.91925 0.94514 0.91954 0.86510 0.91182 0.76983 0.91366 0.87738 0.92850 0.74876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.05 0.69 6.66 71.98 0.48 1.17 16 3 O -0.40 -9.25 9.88 -129.94 -1.28 -10.53 16 4 C 0.05 0.81 6.42 71.24 0.46 1.27 16 5 C 0.51 12.77 7.87 87.66 0.69 13.46 16 6 O -0.57 -20.48 16.17 16.01 0.26 -20.23 16 7 N -0.70 -14.36 4.17 -442.15 -1.84 -16.21 16 8 C 0.16 3.79 2.51 45.07 0.11 3.91 16 9 H 0.08 2.13 7.59 -2.39 -0.02 2.11 16 10 C -0.11 -3.25 5.76 30.65 0.18 -3.07 16 11 C 0.06 1.91 4.96 86.33 0.43 2.34 16 12 N -0.53 -14.86 4.39 -900.96 -3.96 -18.82 16 13 C 0.06 1.86 5.45 85.56 0.47 2.33 16 14 C 0.44 19.87 7.46 87.66 0.65 20.52 16 15 O -0.61 -32.77 13.92 -3.07 -0.04 -32.82 16 16 N -0.57 -28.40 5.29 -306.98 -1.62 -30.02 16 17 C -0.33 -18.38 9.68 84.04 0.81 -17.57 16 18 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 19 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 20 N -0.92 -48.63 13.05 21.66 0.28 -48.34 16 21 Si 0.99 42.56 29.55 68.60 2.03 44.58 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 C 0.03 0.49 4.93 86.33 0.43 0.91 16 26 C 0.12 2.13 3.35 30.65 0.10 2.24 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 O -0.57 -8.50 13.15 -148.98 -1.96 -10.46 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.41 6.13 7.01 -92.71 -0.65 5.48 16 37 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.04 1.00 7.69 -2.39 -0.02 0.98 16 40 H 0.06 2.52 5.80 -2.39 -0.01 2.50 16 41 H 0.12 2.99 7.98 -2.39 -0.02 2.97 16 42 H 0.07 1.87 8.12 -2.39 -0.02 1.86 16 43 H 0.40 18.45 7.90 -92.71 -0.73 17.72 16 44 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 45 H 0.10 1.46 8.01 -2.39 -0.02 1.44 16 46 H 0.05 0.80 6.64 -2.38 -0.02 0.78 16 47 H 0.40 2.42 9.08 -74.06 -0.67 1.75 16 Total: -1.00 -78.79 384.42 -3.17 -81.96 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -1.04 Total: 34.88 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 6.01 Total: 26.00 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -7.14 Total: -113.39 kcal Atomic # 8 Polarization: -71.01 SS G_CDS: -3.03 Total: -74.03 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -78.79 -3.17 -81.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099632558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.062 kcal (2) G-P(sol) polarization free energy of solvation -78.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds