Wall clock time and date at job start Tue Mar 31 2020 04:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.46881 * 2 1 4 4 C 1.42907 * 113.99992 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.46940 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00343 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99775 * 179.97438 * 5 4 3 8 8 C 1.46496 * 119.99804 * 180.02562 * 7 5 4 9 9 H 1.09007 * 109.57570 * 324.83599 * 8 7 5 10 10 C 1.53116 * 109.52850 * 84.99703 * 8 7 5 11 11 C 1.53039 * 109.28281 * 177.55880 * 10 8 7 12 12 N 1.46844 * 109.51840 * 300.82033 * 11 10 8 13 13 C 1.46904 * 110.99518 * 185.83808 * 12 11 10 14 14 C 1.50703 * 109.47094 * 66.04622 * 13 12 11 15 15 O 1.21288 * 120.00019 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99735 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99872 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99705 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00084 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00191 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00129 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 89.99853 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00033 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00027 * 21 19 17 25 25 C 1.46850 * 111.20227 * 61.74327 * 12 11 10 26 26 C 1.53041 * 109.52036 * 298.25750 * 25 12 11 27 27 H 1.08999 * 109.50012 * 299.23577 * 26 25 12 28 28 O 1.42900 * 109.53219 * 179.13782 * 26 25 12 29 29 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46886 * 299.99408 * 1 2 3 31 31 H 1.08991 * 109.47400 * 60.00423 * 1 2 3 32 32 H 1.09000 * 109.47236 * 239.99902 * 2 1 3 33 33 H 1.09003 * 109.47496 * 120.00284 * 2 1 3 34 34 H 1.09001 * 109.46977 * 59.99737 * 4 3 2 35 35 H 1.08996 * 109.46500 * 299.99634 * 4 3 2 36 36 H 0.96993 * 119.99830 * 359.97438 * 7 5 4 37 37 H 1.08998 * 109.50434 * 57.61370 * 10 8 7 38 38 H 1.09005 * 109.50192 * 297.50278 * 10 8 7 39 39 H 1.08994 * 109.46309 * 180.80561 * 11 10 8 40 40 H 1.08998 * 109.45978 * 60.83516 * 11 10 8 41 41 H 1.09002 * 109.47117 * 306.04318 * 13 12 11 42 42 H 1.08998 * 109.47117 * 186.04435 * 13 12 11 43 43 H 0.96998 * 120.00302 * 0.02562 * 16 14 13 44 44 H 0.97009 * 120.00103 * 0.02562 * 20 19 17 45 45 H 1.09002 * 109.46088 * 58.26589 * 25 12 11 46 46 H 1.08992 * 109.46547 * 178.23914 * 25 12 11 47 47 H 0.96701 * 113.99829 * 60.18100 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8193 2.9162 0.0001 6 8 2.9609 3.7729 0.0005 7 7 5.1209 3.2664 0.0002 8 6 5.4985 4.6819 0.0015 9 1 4.7813 5.2517 -0.5894 10 6 5.5091 5.2075 1.4395 11 6 5.9630 6.6690 1.4401 12 7 7.3062 6.7658 0.8547 13 6 7.8310 8.1335 0.9646 14 6 8.0474 8.4734 2.4168 15 8 7.7893 7.6568 3.2756 16 7 8.5276 9.6847 2.7610 17 6 8.7240 9.9941 4.0821 18 1 8.4942 9.2670 4.8469 19 6 9.2185 11.2431 4.4371 20 7 9.4976 12.1280 3.5065 21 14 9.4867 11.6644 6.2370 22 1 10.8650 11.2808 6.6352 23 1 8.5064 10.9230 7.0704 24 1 9.3021 13.1243 6.4366 25 6 7.3111 6.3109 -0.5416 26 6 6.8973 4.8387 -0.6012 27 1 7.6077 4.2378 -0.0334 28 8 6.8826 4.4013 -1.9615 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8333 0.9767 -0.8908 35 1 3.8339 0.9766 0.8892 36 1 5.8074 2.5813 0.0003 37 1 6.1975 4.6124 2.0395 38 1 4.5057 5.1379 1.8598 39 1 5.9853 7.0420 2.4640 40 1 5.2664 7.2659 0.8514 41 1 7.1165 8.8328 0.5303 42 1 8.7784 8.2032 0.4301 43 1 8.7336 10.3379 2.0741 44 1 9.3580 11.9094 2.5718 45 1 6.6081 6.9094 -1.1210 46 1 8.3124 6.4238 -0.9569 47 1 7.7379 4.4726 -2.4069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099632559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:59 Heat of formation + Delta-G solvation = -158.809114 kcal Electronic energy + Delta-G solvation = -28383.699427 eV Core-core repulsion = 24180.817823 eV Total energy + Delta-G solvation = -4202.881604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40213 -39.27765 -38.25207 -37.68606 -36.15588 -34.87307 -34.19873 -32.14205 -31.56261 -30.99800 -29.73820 -28.27882 -26.64428 -24.34502 -23.27961 -23.15843 -22.63506 -20.72921 -20.14807 -19.62698 -17.93333 -17.54744 -17.45274 -17.31112 -16.75379 -16.36405 -16.17034 -15.35371 -15.26742 -14.92069 -14.66229 -14.43281 -14.28968 -13.91987 -13.72093 -13.51993 -13.42211 -13.19260 -13.00467 -12.77321 -12.70471 -12.62123 -12.05450 -11.77852 -11.62704 -11.48288 -11.36140 -11.20981 -11.06130 -10.81345 -10.60626 -10.34017 -10.22608 -10.07208 -9.87740 -9.86497 -9.53368 -9.18517 -8.55508 -8.07744 -7.98730 -6.76515 -3.89850 2.45959 2.53974 3.29845 3.34633 3.53402 3.62171 3.65062 3.81872 4.02712 4.29354 4.46957 4.57391 4.63634 4.71604 4.80053 4.83544 4.86539 4.88119 4.94645 4.95991 5.19098 5.22509 5.28021 5.28773 5.39872 5.53317 5.53539 5.60324 5.65041 5.73049 5.76788 5.80657 5.95994 5.98988 6.18989 6.34195 6.41102 6.68840 7.07729 7.15634 7.31624 7.40050 7.79708 8.06927 8.07103 8.58647 8.78686 9.46101 9.86248 10.66890 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021176 B = 0.002091 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.924073 B =13389.684534 C =14359.654117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.046 3.954 5 C 0.514 3.486 6 O -0.519 6.519 7 N -0.716 5.716 8 C 0.157 3.843 9 H 0.091 0.909 10 C -0.120 4.120 11 C 0.052 3.948 12 N -0.512 5.512 13 C 0.047 3.953 14 C 0.446 3.554 15 O -0.570 6.570 16 N -0.575 5.575 17 C -0.381 4.381 18 H 0.100 0.900 19 C -0.010 4.010 20 N -0.901 5.901 21 Si 1.094 2.906 22 H -0.285 1.285 23 H -0.284 1.284 24 H -0.281 1.281 25 C 0.027 3.973 26 C 0.103 3.897 27 H 0.073 0.927 28 O -0.563 6.563 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.400 0.600 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.028 0.972 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.375 0.625 44 H 0.261 0.739 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 -21.737 -11.935 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.034 4.034 5 C 0.299 3.701 6 O -0.393 6.393 7 N -0.369 5.369 8 C 0.052 3.948 9 H 0.109 0.891 10 C -0.159 4.159 11 C -0.076 4.076 12 N -0.238 5.238 13 C -0.085 4.085 14 C 0.231 3.769 15 O -0.454 6.454 16 N -0.214 5.214 17 C -0.511 4.511 18 H 0.118 0.882 19 C -0.212 4.212 20 N -0.541 5.541 21 Si 0.920 3.080 22 H -0.211 1.211 23 H -0.209 1.209 24 H -0.207 1.207 25 C -0.103 4.103 26 C 0.044 3.956 27 H 0.090 0.910 28 O -0.368 6.368 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.234 0.766 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.046 0.954 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.208 0.792 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.099 0.901 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -8.443 -20.730 -9.901 24.475 hybrid contribution 0.362 -0.745 -2.199 2.350 sum -8.080 -21.475 -12.100 25.940 Atomic orbital electron populations 1.21733 0.93347 1.02246 1.03553 1.22553 0.96058 0.83330 1.00169 1.88036 1.18443 1.26379 1.95423 1.22173 0.84062 0.94651 1.02546 1.20208 0.82707 0.90551 0.76637 1.90744 1.49278 1.51683 1.47615 1.45773 1.06852 1.08419 1.75842 1.21063 0.94963 0.81647 0.97109 0.89077 1.21922 1.02387 0.96681 0.94873 1.22281 0.87096 0.95395 1.02824 1.61497 1.24445 1.22887 1.14933 1.21841 1.00390 0.88946 0.97282 1.19615 0.84467 0.83348 0.89431 1.90492 1.55305 1.48551 1.51027 1.41944 1.57959 1.12921 1.08530 1.20561 1.44560 1.02581 0.83364 0.88241 1.26504 0.95109 0.91555 1.08032 1.70875 1.45985 1.35965 1.01226 0.83092 0.76816 0.76240 0.71889 1.21115 1.20929 1.20664 1.22757 1.01566 0.95504 0.90444 1.22009 0.96454 0.94422 0.82747 0.90955 1.86551 1.37627 1.87521 1.25083 0.90954 0.91612 0.91673 0.93211 0.93142 0.90298 0.90245 0.76585 0.90319 0.90357 0.87164 0.95396 0.93304 0.89318 0.79187 0.92743 0.94003 0.90084 0.77323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.41 6.66 37.16 0.25 0.65 16 3 O -0.36 -4.14 9.88 -55.14 -0.54 -4.68 16 4 C 0.05 0.40 6.42 36.00 0.23 0.63 16 5 C 0.51 6.40 7.87 -10.98 -0.09 6.32 16 6 O -0.52 -9.01 16.17 -14.35 -0.23 -9.24 16 7 N -0.72 -7.48 5.00 -53.69 -0.27 -7.75 16 8 C 0.16 1.95 2.20 -67.81 -0.15 1.80 16 9 H 0.09 1.36 7.59 -51.92 -0.39 0.96 16 10 C -0.12 -1.69 5.67 -26.65 -0.15 -1.84 16 11 C 0.05 0.85 5.11 -3.83 -0.02 0.83 16 12 N -0.51 -8.07 4.39 -236.11 -1.04 -9.10 16 13 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 14 C 0.45 10.26 7.46 -10.98 -0.08 10.18 16 15 O -0.57 -15.02 13.92 5.55 0.08 -14.94 16 16 N -0.58 -14.24 5.28 -10.96 -0.06 -14.30 16 17 C -0.38 -10.60 9.68 -14.94 -0.14 -10.75 16 18 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 19 C -0.01 -0.26 5.50 -17.47 -0.10 -0.35 16 20 N -0.90 -25.09 13.68 55.50 0.76 -24.33 16 21 Si 1.09 24.22 29.92 -169.99 -5.09 19.13 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.03 0.32 5.09 -3.83 -0.02 0.30 16 26 C 0.10 1.10 3.13 -26.65 -0.08 1.02 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 O -0.56 -5.28 13.23 -35.23 -0.47 -5.75 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.40 2.95 8.60 -40.82 -0.35 2.60 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.11 2.19 5.80 -51.93 -0.30 1.89 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 42 H 0.09 1.33 7.98 -51.93 -0.41 0.92 16 43 H 0.38 8.58 6.73 -40.82 -0.27 8.31 16 44 H 0.26 6.98 6.78 -40.82 -0.28 6.70 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 47 H 0.38 1.97 9.08 45.56 0.41 2.38 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -36.79 386.86 -7.70 -44.49 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -6.68 Total: 11.72 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 0.00 Total: 8.93 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.60 Total: -55.49 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.17 Total: -34.61 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.09 Total: 19.13 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.79 -7.70 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099632559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.316 kcal (2) G-P(sol) polarization free energy of solvation -36.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds