Wall clock time and date at job start Tue Mar 31 2020 04:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.46881 * 2 1 4 4 C 1.42907 * 113.99992 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.46940 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00343 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99775 * 179.97438 * 5 4 3 8 8 C 1.46496 * 119.99804 * 180.02562 * 7 5 4 9 9 H 1.09007 * 109.57570 * 324.83599 * 8 7 5 10 10 C 1.53116 * 109.52850 * 84.99703 * 8 7 5 11 11 C 1.53039 * 109.28281 * 177.55880 * 10 8 7 12 12 N 1.46844 * 109.51840 * 300.82033 * 11 10 8 13 13 C 1.46904 * 110.99518 * 185.83808 * 12 11 10 14 14 C 1.50703 * 109.47094 * 66.04622 * 13 12 11 15 15 O 1.21288 * 120.00019 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99735 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99872 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99705 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00084 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00191 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00129 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 89.99853 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00033 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00027 * 21 19 17 25 25 C 1.46850 * 111.20227 * 61.74327 * 12 11 10 26 26 C 1.53041 * 109.52036 * 298.25750 * 25 12 11 27 27 H 1.08999 * 109.50012 * 299.23577 * 26 25 12 28 28 O 1.42900 * 109.53219 * 179.13782 * 26 25 12 29 29 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46886 * 299.99408 * 1 2 3 31 31 H 1.08991 * 109.47400 * 60.00423 * 1 2 3 32 32 H 1.09000 * 109.47236 * 239.99902 * 2 1 3 33 33 H 1.09003 * 109.47496 * 120.00284 * 2 1 3 34 34 H 1.09001 * 109.46977 * 59.99737 * 4 3 2 35 35 H 1.08996 * 109.46500 * 299.99634 * 4 3 2 36 36 H 0.96993 * 119.99830 * 359.97438 * 7 5 4 37 37 H 1.08998 * 109.50434 * 57.61370 * 10 8 7 38 38 H 1.09005 * 109.50192 * 297.50278 * 10 8 7 39 39 H 1.08994 * 109.46309 * 180.80561 * 11 10 8 40 40 H 1.08998 * 109.45978 * 60.83516 * 11 10 8 41 41 H 1.09002 * 109.47117 * 306.04318 * 13 12 11 42 42 H 1.08998 * 109.47117 * 186.04435 * 13 12 11 43 43 H 0.96998 * 120.00302 * 0.02562 * 16 14 13 44 44 H 0.97009 * 120.00103 * 0.02562 * 20 19 17 45 45 H 1.09002 * 109.46088 * 58.26589 * 25 12 11 46 46 H 1.08992 * 109.46547 * 178.23914 * 25 12 11 47 47 H 0.96701 * 113.99829 * 60.18100 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8193 2.9162 0.0001 6 8 2.9609 3.7729 0.0005 7 7 5.1209 3.2664 0.0002 8 6 5.4985 4.6819 0.0015 9 1 4.7813 5.2517 -0.5894 10 6 5.5091 5.2075 1.4395 11 6 5.9630 6.6690 1.4401 12 7 7.3062 6.7658 0.8547 13 6 7.8310 8.1335 0.9646 14 6 8.0474 8.4734 2.4168 15 8 7.7893 7.6568 3.2756 16 7 8.5276 9.6847 2.7610 17 6 8.7240 9.9941 4.0821 18 1 8.4942 9.2670 4.8469 19 6 9.2185 11.2431 4.4371 20 7 9.4976 12.1280 3.5065 21 14 9.4867 11.6644 6.2370 22 1 10.8650 11.2808 6.6352 23 1 8.5064 10.9230 7.0704 24 1 9.3021 13.1243 6.4366 25 6 7.3111 6.3109 -0.5416 26 6 6.8973 4.8387 -0.6012 27 1 7.6077 4.2378 -0.0334 28 8 6.8826 4.4013 -1.9615 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8333 0.9767 -0.8908 35 1 3.8339 0.9766 0.8892 36 1 5.8074 2.5813 0.0003 37 1 6.1975 4.6124 2.0395 38 1 4.5057 5.1379 1.8598 39 1 5.9853 7.0420 2.4640 40 1 5.2664 7.2659 0.8514 41 1 7.1165 8.8328 0.5303 42 1 8.7784 8.2032 0.4301 43 1 8.7336 10.3379 2.0741 44 1 9.3580 11.9094 2.5718 45 1 6.6081 6.9094 -1.1210 46 1 8.3124 6.4238 -0.9569 47 1 7.7379 4.4726 -2.4069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099632559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:58 Heat of formation + Delta-G solvation = -191.150073 kcal Electronic energy + Delta-G solvation = -28385.101836 eV Core-core repulsion = 24180.817823 eV Total energy + Delta-G solvation = -4204.284013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43800 -40.57531 -39.61769 -38.54436 -37.25341 -36.25707 -35.82020 -33.31862 -32.88586 -32.23858 -30.77655 -29.32544 -27.87150 -26.14880 -24.35933 -23.90567 -23.67010 -21.70206 -21.48749 -21.12857 -19.94871 -18.46429 -18.41933 -18.13513 -17.86481 -17.41015 -17.15359 -16.76908 -16.53684 -16.07185 -15.93132 -15.75026 -15.53644 -15.31099 -15.14910 -14.77990 -14.37656 -14.12805 -14.04727 -13.87938 -13.66868 -13.36787 -13.30661 -13.25444 -12.84140 -12.66131 -12.55947 -12.33895 -12.20615 -12.17200 -11.94556 -11.86927 -11.63988 -11.46257 -11.16603 -10.87319 -10.68152 -10.35400 -10.17178 -10.07037 -9.37582 -8.91412 -6.05160 1.52240 1.52764 1.55123 1.74886 1.81829 2.01784 2.34806 2.55918 2.97519 3.07315 3.16725 3.23682 3.60654 3.72579 3.85746 3.91202 4.02383 4.13783 4.15289 4.15857 4.20716 4.28936 4.30647 4.34010 4.37552 4.43020 4.49676 4.56501 4.63174 4.71293 4.81307 4.86981 4.95513 5.01572 5.12595 5.25269 5.36362 5.59133 5.82152 5.97731 6.02014 6.09027 6.51556 6.59019 6.76585 6.84045 7.19401 7.45829 7.94749 8.56414 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021176 B = 0.002091 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.924073 B =13389.684534 C =14359.654117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.406 6.406 4 C 0.049 3.951 5 C 0.507 3.493 6 O -0.578 6.578 7 N -0.701 5.701 8 C 0.160 3.840 9 H 0.065 0.935 10 C -0.108 4.108 11 C 0.057 3.943 12 N -0.522 5.522 13 C 0.058 3.942 14 C 0.445 3.555 15 O -0.606 6.606 16 N -0.588 5.588 17 C -0.407 4.407 18 H 0.073 0.927 19 C -0.043 4.043 20 N -0.918 5.918 21 Si 1.135 2.865 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.274 1.274 25 C 0.026 3.974 26 C 0.119 3.881 27 H 0.087 0.913 28 O -0.567 6.567 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.419 0.581 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.065 0.935 42 H 0.120 0.880 43 H 0.384 0.616 44 H 0.260 0.740 45 H 0.041 0.959 46 H 0.110 0.890 47 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.399 -23.738 -13.392 27.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.325 6.325 4 C -0.030 4.030 5 C 0.294 3.706 6 O -0.457 6.457 7 N -0.354 5.354 8 C 0.055 3.945 9 H 0.083 0.917 10 C -0.147 4.147 11 C -0.072 4.072 12 N -0.248 5.248 13 C -0.074 4.074 14 C 0.233 3.767 15 O -0.492 6.492 16 N -0.228 5.228 17 C -0.536 4.536 18 H 0.091 0.909 19 C -0.241 4.241 20 N -0.558 5.558 21 Si 0.955 3.045 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.199 1.199 25 C -0.102 4.102 26 C 0.058 3.942 27 H 0.104 0.896 28 O -0.375 6.375 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.256 0.744 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.083 0.917 42 H 0.138 0.862 43 H 0.218 0.782 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.128 0.872 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.115 -22.778 -11.413 26.452 hybrid contribution -0.077 -0.215 -1.818 1.833 sum -7.192 -22.993 -13.232 27.486 Atomic orbital electron populations 1.21788 0.93507 1.03483 1.02288 1.22781 0.96066 0.81925 1.01865 1.87992 1.19859 1.28877 1.95810 1.22303 0.83423 0.91890 1.05393 1.21033 0.82486 0.91934 0.75176 1.90718 1.50913 1.53613 1.50455 1.45623 1.07009 1.08065 1.74687 1.20831 0.95846 0.82483 0.95375 0.91712 1.21749 1.01234 0.95401 0.96345 1.22084 0.87952 0.96673 1.00487 1.61452 1.23642 1.21990 1.17698 1.21751 1.02524 0.90248 0.92829 1.20733 0.82032 0.82095 0.91869 1.90476 1.56071 1.49514 1.53095 1.41995 1.58973 1.13965 1.07825 1.20520 1.45975 1.02666 0.84467 0.90891 1.27771 0.94130 0.91091 1.11115 1.70942 1.46970 1.36348 1.01506 0.82598 0.77571 0.76378 0.67955 1.19498 1.20423 1.19911 1.22906 1.03333 0.96156 0.87815 1.21740 0.94883 0.93799 0.83732 0.89550 1.86523 1.39623 1.87164 1.24214 0.88443 0.92999 0.92824 0.91285 0.91490 0.87096 0.87278 0.74375 0.90272 0.91989 0.91324 0.95488 0.91688 0.86162 0.78193 0.92952 0.94076 0.87198 0.74796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 71.98 0.74 -1.19 16 2 C 0.05 0.63 6.66 71.98 0.48 1.11 16 3 O -0.41 -8.85 9.88 -129.94 -1.28 -10.14 16 4 C 0.05 0.76 6.42 71.23 0.46 1.22 16 5 C 0.51 12.30 7.87 87.66 0.69 12.99 16 6 O -0.58 -20.76 16.17 16.01 0.26 -20.50 16 7 N -0.70 -13.56 5.00 -442.16 -2.21 -15.77 16 8 C 0.16 3.85 2.20 45.07 0.10 3.95 16 9 H 0.06 1.95 7.59 -2.38 -0.02 1.93 16 10 C -0.11 -3.11 5.67 30.65 0.17 -2.93 16 11 C 0.06 1.89 5.11 86.33 0.44 2.33 16 12 N -0.52 -15.77 4.39 -900.92 -3.96 -19.73 16 13 C 0.06 1.89 5.45 85.56 0.47 2.35 16 14 C 0.45 20.69 7.46 87.66 0.65 21.34 16 15 O -0.61 -32.88 13.92 -3.05 -0.04 -32.92 16 16 N -0.59 -29.53 5.28 -306.99 -1.62 -31.16 16 17 C -0.41 -23.15 9.68 84.04 0.81 -22.34 16 18 H 0.07 4.47 7.16 -2.91 -0.02 4.45 16 19 C -0.04 -2.33 5.50 84.93 0.47 -1.86 16 20 N -0.92 -51.11 13.68 21.66 0.30 -50.81 16 21 Si 1.13 48.73 29.92 68.60 2.05 50.78 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 23 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 25 C 0.03 0.55 5.09 86.33 0.44 0.99 16 26 C 0.12 2.19 3.13 30.65 0.10 2.28 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 O -0.57 -8.62 13.23 -148.98 -1.97 -10.59 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.42 4.95 8.60 -92.71 -0.80 4.15 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.07 2.88 5.80 -2.39 -0.01 2.87 16 40 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 42 H 0.12 3.24 7.98 -2.39 -0.02 3.22 16 43 H 0.38 17.67 6.73 -92.71 -0.62 17.05 16 44 H 0.26 13.93 6.78 -92.70 -0.63 13.30 16 45 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.11 1.73 8.01 -2.39 -0.02 1.71 16 47 H 0.40 2.39 9.08 -74.06 -0.67 1.72 16 Total: -1.00 -83.97 386.86 -3.41 -87.37 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: -0.95 Total: 33.23 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 6.02 Total: 20.25 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -7.49 Total: -117.47 kcal Atomic # 8 Polarization: -71.12 SS G_CDS: -3.04 Total: -74.15 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.05 Total: 50.78 kcal Total: -83.97 -3.41 -87.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099632559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.778 kcal (2) G-P(sol) polarization free energy of solvation -83.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds