Wall clock time and date at job start Tue Mar 31 2020 04:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47432 * 2 1 4 4 C 1.42897 * 114.00190 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47117 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00251 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99754 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99824 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.57598 * 324.84734 * 8 7 5 10 10 C 1.53124 * 109.51951 * 85.00273 * 8 7 5 11 11 C 1.53032 * 109.27817 * 62.25132 * 10 8 7 12 12 N 1.46847 * 109.52682 * 59.17958 * 11 10 8 13 13 C 1.46899 * 111.00044 * 174.15899 * 12 11 10 14 14 C 1.50703 * 109.47107 * 66.04660 * 13 12 11 15 15 O 1.21286 * 120.00016 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00161 * 180.02562 * 14 13 12 17 17 C 1.37091 * 120.00108 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00333 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99712 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99793 * 179.97438 * 19 17 16 21 21 Si 1.86790 * 120.00276 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47428 * 90.00011 * 21 19 17 23 23 H 1.48508 * 109.47300 * 209.99991 * 21 19 17 24 24 H 1.48504 * 109.47120 * 329.99721 * 21 19 17 25 25 C 1.46842 * 111.19604 * 298.25798 * 12 11 10 26 26 C 1.53035 * 109.52655 * 61.73774 * 25 12 11 27 27 H 1.09005 * 109.49923 * 60.76046 * 26 25 12 28 28 O 1.42895 * 109.50432 * 180.87926 * 26 25 12 29 29 H 1.08999 * 109.47083 * 59.99675 * 1 2 3 30 30 H 1.09003 * 109.47321 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46665 * 299.99986 * 1 2 3 32 32 H 1.09005 * 109.46665 * 240.00014 * 2 1 3 33 33 H 1.08999 * 109.47083 * 120.00325 * 2 1 3 34 34 H 1.08996 * 109.47678 * 59.99630 * 4 3 2 35 35 H 1.09007 * 109.46758 * 299.99419 * 4 3 2 36 36 H 0.96997 * 120.00252 * 359.97438 * 7 5 4 37 37 H 1.08997 * 109.49990 * 302.30831 * 10 8 7 38 38 H 1.08997 * 109.50169 * 182.19419 * 10 8 7 39 39 H 1.09003 * 109.46697 * 299.15746 * 11 10 8 40 40 H 1.09005 * 109.45482 * 179.19115 * 11 10 8 41 41 H 1.09002 * 109.47043 * 186.04640 * 13 12 11 42 42 H 1.09001 * 109.47354 * 306.04701 * 13 12 11 43 43 H 0.97005 * 119.99463 * 359.97438 * 16 14 13 44 44 H 0.96996 * 120.00229 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.46292 * 181.75922 * 25 12 11 46 46 H 1.09008 * 109.46217 * 301.72586 * 25 12 11 47 47 H 0.96704 * 114.00246 * 299.79969 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9160 0.0001 6 8 2.9611 3.7728 0.0005 7 7 5.1210 3.2661 0.0002 8 6 5.4988 4.6816 0.0003 9 1 4.7818 5.2510 -0.5910 10 6 5.5092 5.2083 1.4381 11 6 6.5606 4.4462 2.2478 12 7 7.8811 4.6277 1.6315 13 6 8.9353 4.0253 2.4584 14 6 8.7564 2.5292 2.4889 15 8 7.8407 2.0155 1.8819 16 7 9.6135 1.7622 3.1914 17 6 9.4512 0.4012 3.2187 18 1 8.6362 -0.0563 2.6775 19 6 10.3352 -0.3895 3.9426 20 7 10.1792 -1.6941 3.9691 21 14 11.7451 0.4018 4.8780 22 1 11.3013 0.7322 6.2561 23 1 12.8899 -0.5423 4.9397 24 1 12.1653 1.6444 4.1819 25 6 7.9090 4.0866 0.2668 26 6 6.8978 4.8378 -0.6021 27 1 7.1627 5.8946 -0.6376 28 8 6.9107 4.2972 -1.9248 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8334 0.9766 -0.8907 35 1 3.8340 0.9764 0.8893 36 1 5.8076 2.5809 0.0003 37 1 4.5269 5.0605 1.8868 38 1 5.7522 6.2708 1.4347 39 1 6.3094 3.3856 2.2625 40 1 6.5804 4.8288 3.2683 41 1 9.9107 4.2661 2.0358 42 1 8.8714 4.4195 3.4727 43 1 10.3457 2.1732 3.6772 44 1 10.7960 -2.2461 4.4748 45 1 8.9082 4.2077 -0.1516 46 1 7.6514 3.0276 0.2906 47 1 7.7676 4.3625 -2.3681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099632560.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:06 Heat of formation + Delta-G solvation = -151.754696 kcal Electronic energy + Delta-G solvation = -29761.549685 eV Core-core repulsion = 25558.973983 eV Total energy + Delta-G solvation = -4202.575701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.45020 -39.22210 -38.13600 -37.32215 -35.94040 -34.49742 -33.88722 -31.93255 -31.78615 -31.20508 -29.59977 -28.03165 -26.82055 -24.60410 -23.06928 -22.85996 -22.46781 -20.98972 -19.63435 -19.10151 -18.35512 -17.34347 -17.25530 -16.84831 -16.41985 -16.16018 -15.52927 -15.45066 -15.25785 -14.94193 -14.79031 -14.32867 -14.15848 -13.94433 -13.70441 -13.15216 -13.11548 -12.95714 -12.69391 -12.60256 -12.48757 -12.36053 -12.27750 -11.94875 -11.48270 -11.41473 -11.37139 -11.30027 -11.02321 -10.91677 -10.71072 -10.34816 -10.14927 -9.96809 -9.72669 -9.63885 -9.57868 -9.44894 -8.85888 -8.33128 -7.64168 -6.47084 -3.98668 2.79840 2.91344 2.91659 2.96347 3.05620 3.50991 3.87615 3.96774 4.05921 4.25121 4.52768 4.77155 4.89917 4.93725 5.00285 5.07729 5.10939 5.18118 5.22731 5.27615 5.28213 5.30758 5.40322 5.54727 5.58378 5.63163 5.70088 5.77862 5.79405 5.79834 5.96188 5.99316 6.02053 6.17602 6.36112 6.49146 6.65446 7.01708 7.08099 7.17842 7.40240 7.61213 7.71142 7.97961 8.40080 8.41979 8.77697 9.25618 9.62325 10.65384 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.003637 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.621107 B = 7697.767670 C = 9657.552712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.043 3.957 5 C 0.519 3.481 6 O -0.533 6.533 7 N -0.707 5.707 8 C 0.160 3.840 9 H 0.090 0.910 10 C -0.123 4.123 11 C 0.038 3.962 12 N -0.508 5.508 13 C 0.039 3.961 14 C 0.414 3.586 15 O -0.580 6.580 16 N -0.580 5.580 17 C -0.310 4.310 18 H 0.119 0.881 19 C 0.044 3.956 20 N -0.876 5.876 21 Si 0.880 3.120 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.268 1.268 25 C -0.002 4.002 26 C 0.103 3.897 27 H 0.071 0.929 28 O -0.561 6.561 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.410 0.590 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.372 0.628 44 H 0.275 0.725 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.922 9.731 -6.438 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.285 6.285 4 C -0.037 4.037 5 C 0.304 3.696 6 O -0.409 6.409 7 N -0.362 5.362 8 C 0.055 3.945 9 H 0.108 0.892 10 C -0.162 4.162 11 C -0.089 4.089 12 N -0.233 5.233 13 C -0.093 4.093 14 C 0.200 3.800 15 O -0.466 6.466 16 N -0.217 5.217 17 C -0.439 4.439 18 H 0.137 0.863 19 C -0.160 4.160 20 N -0.515 5.515 21 Si 0.706 3.294 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.130 4.130 26 C 0.043 3.957 27 H 0.089 0.911 28 O -0.366 6.366 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.247 0.753 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.205 0.795 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.112 0.888 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.749 10.326 -6.665 14.529 hybrid contribution 2.436 -0.983 0.872 2.768 sum -5.313 9.343 -5.793 12.209 Atomic orbital electron populations 1.21720 0.93561 1.02109 1.03267 1.22546 0.95769 0.83539 1.00424 1.87976 1.18731 1.26250 1.95505 1.22194 0.83574 0.94865 1.03039 1.20146 0.82717 0.90434 0.76288 1.90681 1.49520 1.51743 1.48988 1.45843 1.07073 1.08556 1.74718 1.20895 0.94796 0.82473 0.96321 0.89183 1.21940 0.99519 1.00375 0.94385 1.22277 0.87975 1.01515 0.97179 1.62393 1.04185 1.54947 1.01748 1.22098 0.96456 0.91503 0.99282 1.20986 0.85291 0.89159 0.84520 1.90366 1.33950 1.74654 1.47594 1.42409 1.26705 1.07918 1.44710 1.19430 1.14595 0.79518 1.30308 0.86297 1.25086 0.98071 0.95327 0.97538 1.69616 1.37589 1.03550 1.40705 0.86669 0.82507 0.79430 0.80793 1.19508 1.20065 1.19393 1.23135 0.98990 1.01703 0.89161 1.22033 0.94485 0.97056 0.82143 0.91074 1.86544 1.37537 1.84793 1.27707 0.91845 0.91056 0.91760 0.93213 0.92992 0.90302 0.89832 0.75281 0.90430 0.90431 0.90925 0.91271 0.89132 0.89045 0.79549 0.91435 0.91337 0.88843 0.77484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.04 16 2 C 0.05 0.60 6.66 37.16 0.25 0.85 16 3 O -0.37 -5.51 9.88 -55.14 -0.54 -6.05 16 4 C 0.04 0.60 6.42 36.00 0.23 0.83 16 5 C 0.52 8.45 7.87 -10.99 -0.09 8.36 16 6 O -0.53 -10.39 16.17 -14.35 -0.23 -10.62 16 7 N -0.71 -10.57 4.17 -53.68 -0.22 -10.79 16 8 C 0.16 2.23 2.51 -67.80 -0.17 2.06 16 9 H 0.09 1.35 7.59 -51.93 -0.39 0.95 16 10 C -0.12 -1.64 5.76 -26.65 -0.15 -1.79 16 11 C 0.04 0.56 4.95 -3.84 -0.02 0.54 16 12 N -0.51 -7.15 4.86 -236.11 -1.15 -8.30 16 13 C 0.04 0.57 5.86 -4.98 -0.03 0.54 16 14 C 0.41 8.20 7.20 -10.98 -0.08 8.12 16 15 O -0.58 -12.84 11.20 5.55 0.06 -12.78 16 16 N -0.58 -12.58 5.09 -10.97 -0.06 -12.63 16 17 C -0.31 -8.13 10.16 -14.94 -0.15 -8.28 16 18 H 0.12 3.57 7.39 -52.49 -0.39 3.19 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 20 N -0.88 -24.36 13.96 55.50 0.77 -23.59 16 21 Si 0.88 18.34 27.73 -169.99 -4.71 13.63 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.27 -5.06 6.52 56.52 0.37 -4.69 16 25 C 0.00 -0.02 4.44 -3.84 -0.02 -0.04 16 26 C 0.10 1.26 3.35 -26.65 -0.09 1.17 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 O -0.56 -6.75 13.14 -35.23 -0.46 -7.21 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.41 6.31 7.01 -40.82 -0.29 6.03 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.29 5.54 -51.93 -0.29 1.00 16 40 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 43 H 0.37 7.14 5.76 -40.82 -0.24 6.91 16 44 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 46 H 0.09 1.59 3.86 -51.92 -0.20 1.39 16 47 H 0.38 2.98 9.08 45.56 0.41 3.39 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -32.65 376.24 -7.36 -40.01 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -6.45 Total: 20.29 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -0.03 Total: 12.37 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.65 Total: -55.31 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.18 Total: -36.66 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -4.71 Total: 13.63 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.65 -7.36 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099632560.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.744 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds