Wall clock time and date at job start Tue Mar 31 2020 04:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47432 * 2 1 4 4 C 1.42897 * 114.00190 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47117 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00251 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99754 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99824 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.57598 * 324.84734 * 8 7 5 10 10 C 1.53124 * 109.51951 * 85.00273 * 8 7 5 11 11 C 1.53032 * 109.27817 * 62.25132 * 10 8 7 12 12 N 1.46847 * 109.52682 * 59.17958 * 11 10 8 13 13 C 1.46899 * 111.00044 * 174.15899 * 12 11 10 14 14 C 1.50703 * 109.47107 * 66.04660 * 13 12 11 15 15 O 1.21286 * 120.00016 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00161 * 180.02562 * 14 13 12 17 17 C 1.37091 * 120.00108 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00333 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99712 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99793 * 179.97438 * 19 17 16 21 21 Si 1.86790 * 120.00276 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47428 * 90.00011 * 21 19 17 23 23 H 1.48508 * 109.47300 * 209.99991 * 21 19 17 24 24 H 1.48504 * 109.47120 * 329.99721 * 21 19 17 25 25 C 1.46842 * 111.19604 * 298.25798 * 12 11 10 26 26 C 1.53035 * 109.52655 * 61.73774 * 25 12 11 27 27 H 1.09005 * 109.49923 * 60.76046 * 26 25 12 28 28 O 1.42895 * 109.50432 * 180.87926 * 26 25 12 29 29 H 1.08999 * 109.47083 * 59.99675 * 1 2 3 30 30 H 1.09003 * 109.47321 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46665 * 299.99986 * 1 2 3 32 32 H 1.09005 * 109.46665 * 240.00014 * 2 1 3 33 33 H 1.08999 * 109.47083 * 120.00325 * 2 1 3 34 34 H 1.08996 * 109.47678 * 59.99630 * 4 3 2 35 35 H 1.09007 * 109.46758 * 299.99419 * 4 3 2 36 36 H 0.96997 * 120.00252 * 359.97438 * 7 5 4 37 37 H 1.08997 * 109.49990 * 302.30831 * 10 8 7 38 38 H 1.08997 * 109.50169 * 182.19419 * 10 8 7 39 39 H 1.09003 * 109.46697 * 299.15746 * 11 10 8 40 40 H 1.09005 * 109.45482 * 179.19115 * 11 10 8 41 41 H 1.09002 * 109.47043 * 186.04640 * 13 12 11 42 42 H 1.09001 * 109.47354 * 306.04701 * 13 12 11 43 43 H 0.97005 * 119.99463 * 359.97438 * 16 14 13 44 44 H 0.96996 * 120.00229 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.46292 * 181.75922 * 25 12 11 46 46 H 1.09008 * 109.46217 * 301.72586 * 25 12 11 47 47 H 0.96704 * 114.00246 * 299.79969 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9160 0.0001 6 8 2.9611 3.7728 0.0005 7 7 5.1210 3.2661 0.0002 8 6 5.4988 4.6816 0.0003 9 1 4.7818 5.2510 -0.5910 10 6 5.5092 5.2083 1.4381 11 6 6.5606 4.4462 2.2478 12 7 7.8811 4.6277 1.6315 13 6 8.9353 4.0253 2.4584 14 6 8.7564 2.5292 2.4889 15 8 7.8407 2.0155 1.8819 16 7 9.6135 1.7622 3.1914 17 6 9.4512 0.4012 3.2187 18 1 8.6362 -0.0563 2.6775 19 6 10.3352 -0.3895 3.9426 20 7 10.1792 -1.6941 3.9691 21 14 11.7451 0.4018 4.8780 22 1 11.3013 0.7322 6.2561 23 1 12.8899 -0.5423 4.9397 24 1 12.1653 1.6444 4.1819 25 6 7.9090 4.0866 0.2668 26 6 6.8978 4.8378 -0.6021 27 1 7.1627 5.8946 -0.6376 28 8 6.9107 4.2972 -1.9248 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8334 0.9766 -0.8907 35 1 3.8340 0.9764 0.8893 36 1 5.8076 2.5809 0.0003 37 1 4.5269 5.0605 1.8868 38 1 5.7522 6.2708 1.4347 39 1 6.3094 3.3856 2.2625 40 1 6.5804 4.8288 3.2683 41 1 9.9107 4.2661 2.0358 42 1 8.8714 4.4195 3.4727 43 1 10.3457 2.1732 3.6772 44 1 10.7960 -2.2461 4.4748 45 1 8.9082 4.2077 -0.1516 46 1 7.6514 3.0276 0.2906 47 1 7.7676 4.3625 -2.3681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099632560.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:04 Heat of formation + Delta-G solvation = -180.660515 kcal Electronic energy + Delta-G solvation = -29762.803135 eV Core-core repulsion = 25558.973983 eV Total energy + Delta-G solvation = -4203.829151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.68428 -40.61890 -39.42754 -38.48880 -37.08199 -35.99784 -35.39179 -33.75954 -32.94039 -32.22713 -30.69845 -29.30330 -28.09438 -26.24682 -24.20921 -23.75635 -23.67588 -22.19923 -21.30420 -20.50361 -19.92153 -18.53989 -18.26715 -18.02277 -17.64271 -17.48848 -16.95465 -16.66892 -16.39600 -16.34412 -16.04435 -15.58355 -15.52421 -15.29908 -15.10933 -14.65516 -14.26714 -14.14970 -14.03118 -13.84857 -13.64935 -13.47998 -13.28396 -13.25329 -12.97853 -12.52059 -12.41054 -12.39684 -12.24002 -12.18023 -12.13106 -11.98995 -11.51698 -11.34064 -10.99180 -10.97066 -10.83620 -10.76252 -10.19821 -10.09870 -9.01179 -8.41465 -6.00624 1.30273 1.34711 1.43660 1.50645 1.79930 1.93825 2.22463 2.80615 2.98263 2.99131 3.16572 3.22962 3.66643 3.77186 3.90343 4.07318 4.07949 4.09975 4.18590 4.20547 4.24220 4.29926 4.39875 4.44169 4.46167 4.55913 4.65573 4.68388 4.78361 4.86078 4.89989 4.97923 5.02791 5.18176 5.21696 5.28453 5.47336 5.53541 5.88499 6.00024 6.01005 6.01104 6.45341 6.58252 6.86551 6.89684 7.14021 7.41118 7.95688 8.75591 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.003637 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.621107 B = 7697.767670 C = 9657.552712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.394 6.394 4 C 0.045 3.955 5 C 0.513 3.487 6 O -0.570 6.570 7 N -0.701 5.701 8 C 0.151 3.849 9 H 0.079 0.921 10 C -0.114 4.114 11 C 0.041 3.959 12 N -0.493 5.493 13 C 0.045 3.955 14 C 0.419 3.581 15 O -0.604 6.604 16 N -0.589 5.589 17 C -0.322 4.322 18 H 0.060 0.940 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.959 3.041 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.229 1.229 25 C 0.000 4.000 26 C 0.116 3.884 27 H 0.096 0.904 28 O -0.575 6.575 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.408 0.592 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.037 0.963 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.388 0.612 44 H 0.277 0.723 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 12.433 -6.248 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.313 6.313 4 C -0.035 4.035 5 C 0.300 3.700 6 O -0.450 6.450 7 N -0.354 5.354 8 C 0.047 3.953 9 H 0.098 0.902 10 C -0.152 4.152 11 C -0.087 4.087 12 N -0.216 5.216 13 C -0.087 4.087 14 C 0.206 3.794 15 O -0.490 6.490 16 N -0.230 5.230 17 C -0.452 4.452 18 H 0.078 0.922 19 C -0.214 4.214 20 N -0.575 5.575 21 Si 0.780 3.220 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.152 1.152 25 C -0.129 4.129 26 C 0.056 3.944 27 H 0.114 0.886 28 O -0.383 6.383 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.245 0.755 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.223 0.777 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.781 13.061 -6.507 15.696 hybrid contribution 1.678 -1.827 0.679 2.572 sum -4.104 11.234 -5.828 13.304 Atomic orbital electron populations 1.21754 0.92338 1.03627 1.02677 1.22827 0.96844 0.82108 1.01404 1.87948 1.19006 1.28629 1.95708 1.22219 0.83658 0.93508 1.04080 1.20581 0.82732 0.91143 0.75565 1.90648 1.50439 1.52875 1.51020 1.45894 1.06567 1.09211 1.73710 1.21079 0.95808 0.81608 0.96842 0.90247 1.21847 0.98325 1.01560 0.93499 1.22222 0.88699 0.99554 0.98241 1.62474 1.03652 1.53821 1.01683 1.22306 0.98141 0.86791 1.01429 1.22253 0.83588 0.91466 0.82062 1.90404 1.34723 1.76046 1.47816 1.42269 1.28265 1.06097 1.46391 1.19003 1.13608 0.82020 1.30529 0.92209 1.26068 1.01280 0.95634 0.98382 1.69797 1.39436 1.05709 1.42550 0.85439 0.77589 0.79647 0.79337 1.18597 1.20516 1.15192 1.23123 1.00391 0.99901 0.89453 1.21907 0.92554 0.98029 0.81906 0.88583 1.86514 1.39319 1.84931 1.27525 0.92178 0.88457 0.92583 0.91693 0.92494 0.88280 0.89557 0.75538 0.91989 0.87919 0.94484 0.90085 0.85876 0.86283 0.77681 0.91336 0.89503 0.92189 0.75265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 10.28 71.98 0.74 -2.00 16 2 C 0.04 0.99 6.66 71.98 0.48 1.47 16 3 O -0.39 -12.15 9.88 -129.94 -1.28 -13.43 16 4 C 0.04 1.30 6.42 71.24 0.46 1.75 16 5 C 0.51 17.29 7.87 87.66 0.69 17.98 16 6 O -0.57 -23.01 16.17 16.00 0.26 -22.75 16 7 N -0.70 -21.34 4.17 -442.14 -1.84 -23.19 16 8 C 0.15 4.09 2.51 45.07 0.11 4.21 16 9 H 0.08 2.35 7.59 -2.39 -0.02 2.33 16 10 C -0.11 -2.87 5.76 30.65 0.18 -2.70 16 11 C 0.04 1.13 4.95 86.32 0.43 1.56 16 12 N -0.49 -12.28 4.86 -900.93 -4.38 -16.66 16 13 C 0.05 1.15 5.86 85.56 0.50 1.65 16 14 C 0.42 16.07 7.20 87.66 0.63 16.70 16 15 O -0.60 -27.23 11.20 -3.05 -0.03 -27.26 16 16 N -0.59 -24.92 5.09 -306.99 -1.56 -26.49 16 17 C -0.32 -17.45 10.16 84.04 0.85 -16.60 16 18 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 19 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 20 N -0.93 -54.15 13.96 21.66 0.30 -53.84 16 21 Si 0.96 36.87 27.73 68.60 1.90 38.77 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 23 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 24 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 25 C 0.00 -0.01 4.44 86.33 0.38 0.38 16 26 C 0.12 2.58 3.35 30.64 0.10 2.68 16 27 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 28 O -0.58 -12.73 13.14 -148.98 -1.96 -14.69 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 34 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.41 12.95 7.01 -92.71 -0.65 12.30 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.32 5.54 -2.39 -0.01 1.30 16 40 H 0.08 2.05 8.06 -2.38 -0.02 2.03 16 41 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.12 2.52 8.06 -2.39 -0.02 2.50 16 43 H 0.39 13.68 5.76 -92.70 -0.53 13.14 16 44 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 45 H 0.09 1.90 8.12 -2.39 -0.02 1.88 16 46 H 0.06 2.00 3.86 -2.38 -0.01 1.99 16 47 H 0.40 5.24 9.08 -74.05 -0.67 4.56 16 Total: -1.00 -76.43 376.24 -3.47 -79.91 By element: Atomic # 1 Polarization: 53.77 SS G_CDS: -0.90 Total: 52.87 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 6.02 Total: 26.76 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -7.48 Total: -120.18 kcal Atomic # 8 Polarization: -75.11 SS G_CDS: -3.02 Total: -78.13 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 1.90 Total: 38.77 kcal Total: -76.43 -3.47 -79.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099632560.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.755 kcal (2) G-P(sol) polarization free energy of solvation -76.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds