Wall clock time and date at job start Tue Mar 31 2020 04:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00026 * 2 1 4 4 C 1.50700 * 109.47415 * 179.97438 * 3 2 1 5 5 O 1.21287 * 119.99838 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00204 * 180.02562 * 4 3 2 7 7 C 1.46502 * 120.00081 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47152 * 180.02562 * 7 6 4 9 9 C 1.50704 * 109.47036 * 180.02562 * 8 7 6 10 10 O 1.21278 * 120.00096 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99641 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99518 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.45343 * 34.96219 * 12 11 9 14 14 C 1.53045 * 109.45797 * 274.99883 * 12 11 9 15 15 C 1.53192 * 109.33739 * 178.60184 * 14 12 11 16 16 N 1.46998 * 108.74154 * 54.62332 * 15 14 12 17 17 C 1.36930 * 120.61644 * 126.38326 * 16 15 14 18 18 H 1.07998 * 120.00280 * 207.68527 * 17 16 15 19 19 C 1.38815 * 119.99720 * 27.69315 * 17 16 15 20 20 N 1.31614 * 120.00332 * 17.34405 * 19 17 16 21 21 Si 1.86808 * 119.99812 * 197.34769 * 19 17 16 22 22 H 1.48504 * 109.46698 * 59.99692 * 21 19 17 23 23 H 1.48500 * 109.47100 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46909 * 299.99973 * 21 19 17 25 25 C 1.46925 * 118.75135 * 306.40734 * 16 15 14 26 26 C 1.53043 * 109.46095 * 154.93343 * 12 11 9 27 27 H 1.08996 * 109.49819 * 61.39637 * 26 12 11 28 28 O 1.42897 * 109.49588 * 301.33553 * 26 12 11 29 29 H 1.08998 * 109.47139 * 299.99663 * 1 2 3 30 30 H 1.08996 * 109.46747 * 59.99833 * 1 2 3 31 31 H 1.08998 * 109.46866 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46605 * 60.00594 * 3 2 1 33 33 H 1.08993 * 109.47242 * 300.00093 * 3 2 1 34 34 H 0.96998 * 119.99914 * 0.02562 * 6 4 3 35 35 H 1.09001 * 109.47122 * 60.00515 * 7 6 4 36 36 H 1.08993 * 109.47494 * 300.00659 * 7 6 4 37 37 H 1.09000 * 109.47260 * 60.00123 * 8 7 6 38 38 H 1.09007 * 109.47216 * 300.00171 * 8 7 6 39 39 H 0.96995 * 119.99876 * 359.97438 * 11 9 8 40 40 H 1.09004 * 109.49855 * 298.56668 * 14 12 11 41 41 H 1.09000 * 109.49888 * 58.63139 * 14 12 11 42 42 H 1.09004 * 109.58473 * 174.44160 * 15 14 12 43 43 H 1.08995 * 109.58791 * 294.86074 * 15 14 12 44 44 H 0.97007 * 120.00009 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.58839 * 293.82233 * 25 16 15 46 46 H 1.08999 * 109.70556 * 173.46389 * 25 16 15 47 47 H 0.96694 * 114.00356 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0342 0.0916 0.0006 6 7 4.2764 2.2969 0.0013 7 6 5.7369 2.1812 0.0025 8 6 6.3591 3.5789 0.0036 9 6 7.8615 3.4600 0.0042 10 8 8.3831 2.3651 0.0033 11 7 8.6254 4.5704 0.0058 12 6 10.0858 4.4547 0.0058 13 1 10.3812 3.5872 -0.5843 14 6 10.5839 4.2872 1.4432 15 6 12.1079 4.1315 1.4370 16 7 12.6965 5.2737 0.7229 17 6 13.6677 6.0387 1.3116 18 1 13.7827 7.0752 1.0309 19 6 14.5045 5.4819 2.2690 20 7 14.6077 4.1739 2.3723 21 14 15.4841 6.5892 3.4109 22 1 14.5526 7.4368 4.1977 23 1 16.2939 5.7550 4.3348 24 1 16.3840 7.4559 2.6082 25 6 12.2227 5.5792 -0.6338 26 6 10.6974 5.7183 -0.6038 27 1 10.4222 6.5832 -0.0004 28 8 10.2078 5.8905 -1.9352 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8593 3.1726 0.0017 35 1 6.0592 1.6404 -0.8873 36 1 6.0578 1.6403 0.8925 37 1 6.0368 4.1195 0.8936 38 1 6.0382 4.1203 -0.8864 39 1 8.2082 5.4460 0.0061 40 1 10.3104 5.1656 2.0277 41 1 10.1294 3.4003 1.8847 42 1 12.4773 4.1108 2.4623 43 1 12.3785 3.2052 0.9303 44 1 15.1928 3.7848 3.0411 45 1 12.5027 4.7708 -1.3094 46 1 12.6680 6.5130 -0.9771 47 1 10.5550 6.6737 -2.3837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099863080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:03 Heat of formation + Delta-G solvation = -144.871976 kcal Electronic energy + Delta-G solvation = -28040.010733 eV Core-core repulsion = 23837.733489 eV Total energy + Delta-G solvation = -4202.277244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.20272 -39.71551 -38.11015 -37.76780 -35.46018 -35.35143 -34.33228 -32.15396 -31.47074 -30.01901 -29.06634 -28.45505 -26.41861 -25.27369 -23.69664 -22.38412 -21.74970 -21.09430 -20.18768 -19.45053 -17.78685 -17.32678 -17.16067 -16.78019 -16.75827 -16.54778 -15.98353 -15.80249 -15.46158 -14.86429 -14.74186 -14.71834 -14.04408 -13.89657 -13.66583 -13.50287 -13.36228 -13.14415 -12.79890 -12.66255 -12.30297 -12.14285 -12.08687 -11.91683 -11.64739 -11.60020 -11.13257 -10.88127 -10.70665 -10.37331 -10.29948 -10.27133 -10.13776 -9.96893 -9.85685 -9.75017 -9.44884 -9.38113 -8.78729 -8.47553 -6.79820 -5.86750 -3.31043 2.32350 2.39699 2.76052 3.30882 3.34436 3.39843 3.40647 3.71276 4.30402 4.34244 4.48872 4.52908 4.61940 4.66805 4.82009 4.85163 4.87267 4.90316 5.19347 5.22196 5.26904 5.30651 5.45526 5.51770 5.66034 5.74249 5.80499 5.93720 6.06100 6.08866 6.28431 6.45111 6.49518 6.50764 6.63968 6.74563 6.82868 7.13476 7.26694 7.58329 7.67813 7.70450 7.87385 7.92293 8.35292 8.38544 9.10840 9.73390 10.29207 11.21789 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.026492 B = 0.001902 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.682615 B =14714.241436 C =15295.172240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.510 3.490 5 O -0.512 6.512 6 N -0.732 5.732 7 C 0.135 3.865 8 C -0.152 4.152 9 C 0.514 3.486 10 O -0.537 6.537 11 N -0.715 5.715 12 C 0.162 3.838 13 H 0.088 0.912 14 C -0.146 4.146 15 C 0.171 3.829 16 N -0.588 5.588 17 C -0.262 4.262 18 H 0.067 0.933 19 C 0.006 3.994 20 N -0.898 5.898 21 Si 0.905 3.095 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.121 3.879 26 C 0.080 3.920 27 H 0.056 0.944 28 O -0.572 6.572 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.399 0.601 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.396 0.604 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.024 0.976 44 H 0.257 0.743 45 H 0.029 0.971 46 H 0.060 0.940 47 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.316 3.509 -5.255 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.386 6.386 6 N -0.386 5.386 7 C 0.012 3.988 8 C -0.193 4.193 9 C 0.299 3.701 10 O -0.413 6.413 11 N -0.365 5.365 12 C 0.058 3.942 13 H 0.106 0.894 14 C -0.187 4.187 15 C 0.044 3.956 16 N -0.312 5.312 17 C -0.391 4.391 18 H 0.084 0.916 19 C -0.193 4.193 20 N -0.542 5.542 21 Si 0.734 3.266 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.208 1.208 25 C -0.007 4.007 26 C 0.019 3.981 27 H 0.074 0.926 28 O -0.376 6.376 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.233 0.767 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.229 0.771 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.112 0.888 43 H 0.042 0.958 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.078 0.922 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -25.625 1.052 -4.998 26.129 hybrid contribution 0.221 2.318 0.485 2.378 sum -25.404 3.370 -4.513 26.021 Atomic orbital electron populations 1.22852 0.80255 1.03462 1.00119 1.88039 1.19870 1.25112 1.95414 1.22233 0.91585 0.87146 1.02641 1.20242 0.88650 0.84622 0.77010 1.90785 1.74522 1.26415 1.46882 1.45862 1.07325 1.08669 1.76756 1.21063 0.77430 0.95823 1.04474 1.21799 0.93721 0.98869 1.04906 1.20190 0.88583 0.84750 0.76593 1.90764 1.74878 1.26440 1.49264 1.46075 1.07532 1.08348 1.74530 1.21019 0.77487 0.98097 0.97574 0.89394 1.22600 1.00936 1.01162 0.93962 1.20854 0.86038 0.88959 0.99711 1.44045 1.43021 1.33860 1.10235 1.19114 1.08807 0.91908 1.19307 0.91574 1.25072 0.97320 0.95508 1.01439 1.70024 1.39654 1.09063 1.35435 0.86344 0.79644 0.79793 0.80797 1.20976 1.21537 1.20811 1.21520 0.90472 0.99469 0.89252 1.22776 0.96501 0.96518 0.82266 0.92623 1.86473 1.72060 1.50454 1.28618 0.93746 0.93766 0.88998 0.90161 0.90168 0.76681 0.90255 0.90219 0.88342 0.88324 0.77071 0.92385 0.91897 0.88830 0.95753 0.93327 0.95328 0.92181 0.77987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.37 -3.65 10.24 -55.14 -0.56 -4.21 16 3 C 0.04 0.30 6.42 36.01 0.23 0.54 16 4 C 0.51 5.45 7.91 -10.99 -0.09 5.36 16 5 O -0.51 -8.42 16.50 -14.36 -0.24 -8.66 16 6 N -0.73 -5.71 5.56 -60.30 -0.33 -6.04 16 7 C 0.14 1.45 4.96 -4.04 -0.02 1.43 16 8 C -0.15 -1.29 5.81 -27.88 -0.16 -1.45 16 9 C 0.51 7.15 7.79 -10.98 -0.09 7.06 16 10 O -0.54 -10.07 15.64 5.56 0.09 -9.98 16 11 N -0.72 -9.69 4.92 -53.76 -0.26 -9.95 16 12 C 0.16 2.81 2.12 -67.89 -0.14 2.67 16 13 H 0.09 1.80 7.57 -51.93 -0.39 1.41 16 14 C -0.15 -2.81 5.65 -26.61 -0.15 -2.96 16 15 C 0.17 4.04 5.31 -3.67 -0.02 4.02 16 16 N -0.59 -14.18 3.00 -172.26 -0.52 -14.70 16 17 C -0.26 -6.92 9.59 -15.06 -0.14 -7.07 16 18 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 19 C 0.01 0.16 4.91 -17.43 -0.09 0.08 16 20 N -0.90 -25.71 11.19 55.49 0.62 -25.09 16 21 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.12 2.40 6.14 -3.71 -0.02 2.38 16 26 C 0.08 1.31 3.14 -26.61 -0.08 1.23 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 O -0.57 -8.09 13.16 -35.23 -0.46 -8.55 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.40 1.46 8.47 -40.82 -0.35 1.11 16 35 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.40 4.16 8.60 -40.82 -0.35 3.81 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.09 2.47 6.04 -51.93 -0.31 2.15 16 43 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 47 H 0.37 3.73 9.08 45.56 0.41 4.14 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -37.41 389.68 -7.36 -44.77 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.87 Total: 5.92 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 0.34 Total: 14.56 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.49 Total: -55.78 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -1.18 Total: -31.40 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.41 -7.36 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.104 kcal (2) G-P(sol) polarization free energy of solvation -37.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds