Wall clock time and date at job start Tue Mar 31 2020 04:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00026 * 2 1 4 4 C 1.50700 * 109.47415 * 179.97438 * 3 2 1 5 5 O 1.21287 * 119.99838 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00204 * 180.02562 * 4 3 2 7 7 C 1.46502 * 120.00081 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47152 * 180.02562 * 7 6 4 9 9 C 1.50704 * 109.47036 * 180.02562 * 8 7 6 10 10 O 1.21278 * 120.00096 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99641 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99518 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.45343 * 34.96219 * 12 11 9 14 14 C 1.53045 * 109.45797 * 274.99883 * 12 11 9 15 15 C 1.53192 * 109.33739 * 178.60184 * 14 12 11 16 16 N 1.46998 * 108.74154 * 54.62332 * 15 14 12 17 17 C 1.36930 * 120.61644 * 126.38326 * 16 15 14 18 18 H 1.07998 * 120.00280 * 207.68527 * 17 16 15 19 19 C 1.38815 * 119.99720 * 27.69315 * 17 16 15 20 20 N 1.31614 * 120.00332 * 17.34405 * 19 17 16 21 21 Si 1.86808 * 119.99812 * 197.34769 * 19 17 16 22 22 H 1.48504 * 109.46698 * 59.99692 * 21 19 17 23 23 H 1.48500 * 109.47100 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46909 * 299.99973 * 21 19 17 25 25 C 1.46925 * 118.75135 * 306.40734 * 16 15 14 26 26 C 1.53043 * 109.46095 * 154.93343 * 12 11 9 27 27 H 1.08996 * 109.49819 * 61.39637 * 26 12 11 28 28 O 1.42897 * 109.49588 * 301.33553 * 26 12 11 29 29 H 1.08998 * 109.47139 * 299.99663 * 1 2 3 30 30 H 1.08996 * 109.46747 * 59.99833 * 1 2 3 31 31 H 1.08998 * 109.46866 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46605 * 60.00594 * 3 2 1 33 33 H 1.08993 * 109.47242 * 300.00093 * 3 2 1 34 34 H 0.96998 * 119.99914 * 0.02562 * 6 4 3 35 35 H 1.09001 * 109.47122 * 60.00515 * 7 6 4 36 36 H 1.08993 * 109.47494 * 300.00659 * 7 6 4 37 37 H 1.09000 * 109.47260 * 60.00123 * 8 7 6 38 38 H 1.09007 * 109.47216 * 300.00171 * 8 7 6 39 39 H 0.96995 * 119.99876 * 359.97438 * 11 9 8 40 40 H 1.09004 * 109.49855 * 298.56668 * 14 12 11 41 41 H 1.09000 * 109.49888 * 58.63139 * 14 12 11 42 42 H 1.09004 * 109.58473 * 174.44160 * 15 14 12 43 43 H 1.08995 * 109.58791 * 294.86074 * 15 14 12 44 44 H 0.97007 * 120.00009 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.58839 * 293.82233 * 25 16 15 46 46 H 1.08999 * 109.70556 * 173.46389 * 25 16 15 47 47 H 0.96694 * 114.00356 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0342 0.0916 0.0006 6 7 4.2764 2.2969 0.0013 7 6 5.7369 2.1812 0.0025 8 6 6.3591 3.5789 0.0036 9 6 7.8615 3.4600 0.0042 10 8 8.3831 2.3651 0.0033 11 7 8.6254 4.5704 0.0058 12 6 10.0858 4.4547 0.0058 13 1 10.3812 3.5872 -0.5843 14 6 10.5839 4.2872 1.4432 15 6 12.1079 4.1315 1.4370 16 7 12.6965 5.2737 0.7229 17 6 13.6677 6.0387 1.3116 18 1 13.7827 7.0752 1.0309 19 6 14.5045 5.4819 2.2690 20 7 14.6077 4.1739 2.3723 21 14 15.4841 6.5892 3.4109 22 1 14.5526 7.4368 4.1977 23 1 16.2939 5.7550 4.3348 24 1 16.3840 7.4559 2.6082 25 6 12.2227 5.5792 -0.6338 26 6 10.6974 5.7183 -0.6038 27 1 10.4222 6.5832 -0.0004 28 8 10.2078 5.8905 -1.9352 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8593 3.1726 0.0017 35 1 6.0592 1.6404 -0.8873 36 1 6.0578 1.6403 0.8925 37 1 6.0368 4.1195 0.8936 38 1 6.0382 4.1203 -0.8864 39 1 8.2082 5.4460 0.0061 40 1 10.3104 5.1656 2.0277 41 1 10.1294 3.4003 1.8847 42 1 12.4773 4.1108 2.4623 43 1 12.3785 3.2052 0.9303 44 1 15.1928 3.7848 3.0411 45 1 12.5027 4.7708 -1.3094 46 1 12.6680 6.5130 -0.9771 47 1 10.5550 6.6737 -2.3837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099863080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:02 Heat of formation + Delta-G solvation = -178.409342 kcal Electronic energy + Delta-G solvation = -28041.465022 eV Core-core repulsion = 23837.733489 eV Total energy + Delta-G solvation = -4203.731533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.23686 -40.73998 -39.46052 -38.42758 -36.96326 -36.30454 -35.71249 -33.82629 -32.57624 -31.53562 -30.22722 -29.49338 -27.24526 -26.68329 -24.83155 -23.91606 -23.30669 -21.91842 -21.43853 -20.93515 -18.97691 -18.47081 -18.12025 -17.97152 -17.57757 -17.39676 -17.24693 -16.73525 -16.69251 -16.28058 -15.70101 -15.64651 -15.54624 -15.34590 -15.00342 -14.76407 -14.51260 -14.34391 -14.03059 -13.84636 -13.58625 -13.27195 -13.13816 -13.00482 -12.92067 -12.67980 -12.45691 -12.38219 -12.33567 -12.14033 -12.05947 -11.88540 -11.39379 -11.10997 -11.02594 -10.79362 -10.74575 -10.55809 -10.21505 -10.00110 -8.77286 -7.90444 -5.38075 1.48615 1.51075 1.53989 1.58088 1.67292 1.68413 2.31857 2.49347 3.13019 3.16979 3.27058 3.60079 3.63175 3.81082 3.87407 4.01799 4.05514 4.10170 4.22765 4.24012 4.31622 4.39938 4.51705 4.52237 4.53992 4.60294 4.71875 4.83743 4.85933 4.89658 4.93470 4.97820 5.03555 5.12710 5.31424 5.37337 5.51876 5.59841 5.65269 6.06651 6.33088 6.53822 6.62676 6.90358 7.09075 7.22837 7.33764 7.77796 8.30546 9.16739 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.026492 B = 0.001902 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.682615 B =14714.241436 C =15295.172240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.048 3.952 4 C 0.501 3.499 5 O -0.584 6.584 6 N -0.706 5.706 7 C 0.139 3.861 8 C -0.130 4.130 9 C 0.506 3.494 10 O -0.594 6.594 11 N -0.700 5.700 12 C 0.169 3.831 13 H 0.049 0.951 14 C -0.128 4.128 15 C 0.178 3.822 16 N -0.603 5.603 17 C -0.267 4.267 18 H 0.079 0.921 19 C -0.052 4.052 20 N -0.938 5.938 21 Si 0.972 3.028 22 H -0.273 1.273 23 H -0.299 1.299 24 H -0.273 1.273 25 C 0.115 3.885 26 C 0.105 3.895 27 H 0.078 0.922 28 O -0.570 6.570 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.425 0.575 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.418 0.582 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.062 0.938 43 H -0.013 1.013 44 H 0.250 0.750 45 H 0.007 0.993 46 H 0.076 0.924 47 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.474 7.584 -5.678 30.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.031 4.031 4 C 0.288 3.712 5 O -0.463 6.463 6 N -0.362 5.362 7 C 0.014 3.986 8 C -0.170 4.170 9 C 0.294 3.706 10 O -0.475 6.475 11 N -0.351 5.351 12 C 0.063 3.937 13 H 0.068 0.932 14 C -0.168 4.168 15 C 0.052 3.948 16 N -0.327 5.327 17 C -0.397 4.397 18 H 0.096 0.904 19 C -0.247 4.247 20 N -0.584 5.584 21 Si 0.800 3.200 22 H -0.199 1.199 23 H -0.226 1.226 24 H -0.198 1.198 25 C -0.011 4.011 26 C 0.044 3.956 27 H 0.096 0.904 28 O -0.377 6.377 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.264 0.736 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.255 0.745 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.005 0.995 44 H 0.059 0.941 45 H 0.025 0.975 46 H 0.095 0.905 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -28.857 5.267 -5.463 29.838 hybrid contribution 1.193 1.038 0.510 1.662 sum -27.664 6.305 -4.953 28.802 Atomic orbital electron populations 1.23028 0.78156 1.04045 1.01829 1.87978 1.22283 1.27193 1.95846 1.22405 0.88131 0.86700 1.05868 1.21170 0.90658 0.83964 0.75379 1.90757 1.76034 1.29176 1.50304 1.45581 1.05904 1.09533 1.75190 1.20779 0.79294 0.96919 1.01576 1.21726 0.88764 0.97828 1.08689 1.21192 0.90896 0.83664 0.74853 1.90760 1.76370 1.28738 1.51631 1.45798 1.05629 1.09607 1.74099 1.20588 0.80160 0.97458 0.95507 0.93226 1.22303 0.97271 1.01422 0.95835 1.20569 0.89125 0.87762 0.97388 1.44251 1.43035 1.33439 1.11993 1.19558 1.08531 0.92617 1.18949 0.90363 1.25904 0.98925 0.96620 1.03259 1.70210 1.40935 1.11013 1.36211 0.85277 0.78247 0.77882 0.78634 1.19904 1.22593 1.19820 1.21717 0.93429 0.99305 0.86691 1.22272 0.93233 0.96348 0.83793 0.90420 1.86445 1.71645 1.52161 1.27482 0.91994 0.91957 0.89204 0.86694 0.86627 0.73594 0.93397 0.93413 0.84287 0.84343 0.74512 0.90805 0.92677 0.91928 0.99499 0.94068 0.97456 0.90535 0.75362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -7.81 10.24 -129.94 -1.33 -9.14 16 3 C 0.05 0.53 6.42 71.24 0.46 0.99 16 4 C 0.50 10.29 7.91 87.66 0.69 10.99 16 5 O -0.58 -20.16 16.50 15.98 0.26 -19.90 16 6 N -0.71 -9.44 5.56 -463.07 -2.57 -12.01 16 7 C 0.14 2.89 4.96 86.38 0.43 3.32 16 8 C -0.13 -1.75 5.81 29.85 0.17 -1.58 16 9 C 0.51 13.41 7.79 87.66 0.68 14.09 16 10 O -0.59 -23.15 15.64 -3.02 -0.05 -23.19 16 11 N -0.70 -17.25 4.92 -442.39 -2.18 -19.43 16 12 C 0.17 5.75 2.12 45.02 0.10 5.85 16 13 H 0.05 2.10 7.57 -2.39 -0.02 2.09 16 14 C -0.13 -4.97 5.65 30.67 0.17 -4.80 16 15 C 0.18 8.85 5.31 86.35 0.46 9.31 16 16 N -0.60 -29.44 3.00 -698.92 -2.09 -31.53 16 17 C -0.27 -14.07 9.59 84.04 0.81 -13.27 16 18 H 0.08 3.87 7.89 -2.91 -0.02 3.85 16 19 C -0.05 -2.83 4.91 84.86 0.42 -2.41 16 20 N -0.94 -55.92 11.19 21.65 0.24 -55.68 16 21 Si 0.97 43.65 29.59 68.60 2.03 45.68 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C 0.12 4.51 6.14 86.36 0.53 5.04 16 26 C 0.10 3.17 3.14 30.67 0.10 3.27 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 O -0.57 -14.21 13.16 -148.98 -1.96 -16.17 16 29 H 0.06 0.30 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.43 1.17 8.47 -92.71 -0.79 0.39 16 35 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 36 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 37 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.14 0.89 8.14 -2.38 -0.02 0.88 16 39 H 0.42 6.83 8.60 -92.71 -0.80 6.03 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.06 3.48 6.04 -2.38 -0.01 3.47 16 43 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 44 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 45 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 46 H 0.08 2.71 7.94 -2.39 -0.02 2.69 16 47 H 0.40 6.25 9.08 -74.06 -0.67 5.57 16 Total: -1.00 -90.78 389.68 -2.64 -93.42 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -1.25 Total: 15.68 kcal Atomic # 6 Polarization: 26.00 SS G_CDS: 6.26 Total: 32.26 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -6.60 Total: -118.64 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -3.07 Total: -68.40 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -90.78 -2.64 -93.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.990 kcal (2) G-P(sol) polarization free energy of solvation -90.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds