Wall clock time and date at job start Tue Mar 31 2020 04:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99921 * 2 1 4 4 C 1.50703 * 109.46912 * 180.02562 * 3 2 1 5 5 O 1.21281 * 120.00237 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99781 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99677 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.47073 * 180.02562 * 7 6 4 9 9 C 1.50694 * 109.47340 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00075 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00035 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00084 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46298 * 34.96854 * 12 11 9 14 14 C 1.53044 * 109.45960 * 274.99582 * 12 11 9 15 15 C 1.53188 * 109.31144 * 178.61208 * 14 12 11 16 16 N 1.46924 * 108.77660 * 54.63990 * 15 14 12 17 17 C 1.36935 * 120.63266 * 126.36881 * 16 15 14 18 18 H 1.08010 * 119.99658 * 332.45023 * 17 16 15 19 19 C 1.38810 * 120.00425 * 152.18100 * 17 16 15 20 20 N 1.31619 * 119.99248 * 343.15714 * 19 17 16 21 21 Si 1.86791 * 120.00349 * 163.16058 * 19 17 16 22 22 H 1.48506 * 109.47397 * 89.99703 * 21 19 17 23 23 H 1.48497 * 109.47016 * 209.99796 * 21 19 17 24 24 H 1.48496 * 109.47229 * 329.99581 * 21 19 17 25 25 C 1.46927 * 118.73666 * 306.64008 * 16 15 14 26 26 C 1.52761 * 109.00479 * 53.30932 * 25 16 15 27 27 H 1.09011 * 109.58521 * 185.53519 * 26 25 16 28 28 O 1.42892 * 109.36258 * 65.50137 * 26 25 16 29 29 H 1.09003 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46899 * 300.00068 * 1 2 3 31 31 H 1.08991 * 109.47404 * 60.00281 * 1 2 3 32 32 H 1.09002 * 109.47193 * 60.00126 * 3 2 1 33 33 H 1.08999 * 109.46899 * 299.99808 * 3 2 1 34 34 H 0.96995 * 120.00304 * 0.02562 * 6 4 3 35 35 H 1.09002 * 109.47192 * 60.00437 * 7 6 4 36 36 H 1.08999 * 109.47181 * 299.99947 * 7 6 4 37 37 H 1.09002 * 109.46762 * 60.00165 * 8 7 6 38 38 H 1.09002 * 109.47085 * 300.00547 * 8 7 6 39 39 H 0.97001 * 120.00562 * 359.97438 * 11 9 8 40 40 H 1.09003 * 109.49401 * 58.66341 * 14 12 11 41 41 H 1.08993 * 109.49870 * 298.56518 * 14 12 11 42 42 H 1.09004 * 109.59286 * 294.85005 * 15 14 12 43 43 H 1.09012 * 109.58665 * 174.42760 * 15 14 12 44 44 H 0.97005 * 119.99823 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.58334 * 173.14400 * 25 16 15 46 46 H 1.09008 * 109.58397 * 293.57061 * 25 16 15 47 47 H 0.96707 * 114.00152 * 60.15083 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0013 7 6 5.7369 2.1811 -0.0013 8 6 6.3592 3.5789 -0.0014 9 6 7.8615 3.4599 -0.0021 10 8 8.3831 2.3650 -0.0030 11 7 8.6254 4.5702 -0.0018 12 6 10.0858 4.4545 -0.0031 13 1 10.3809 3.5867 -0.5930 14 6 10.5853 4.2878 1.4339 15 6 12.1092 4.1325 1.4258 16 7 12.6971 5.2738 0.7113 17 6 13.6690 6.0391 1.2986 18 1 13.7109 6.1265 2.3743 19 6 14.6036 6.6981 0.5118 20 7 14.7751 6.3418 -0.7436 21 14 15.6178 8.0902 1.2346 22 1 16.8666 7.5404 1.8208 23 1 15.9592 9.0613 0.1643 24 1 14.8340 8.7757 2.2933 25 6 12.2181 5.5820 -0.6431 26 6 10.6968 5.7177 -0.6139 27 1 10.3221 5.8488 -1.6291 28 8 10.3375 6.8520 0.1774 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8594 3.1725 -0.0009 35 1 6.0584 1.6398 -0.8911 36 1 6.0585 1.6406 0.8889 37 1 6.0376 4.1198 0.8886 38 1 6.0375 4.1198 -0.8914 39 1 8.2083 5.4459 -0.0015 40 1 10.1315 3.4009 1.8762 41 1 10.3123 5.1665 2.0182 42 1 12.3795 3.2058 0.9193 43 1 12.4801 4.1127 2.4507 44 1 15.4285 6.8020 -1.2934 45 1 12.6607 6.5183 -0.9829 46 1 12.4974 4.7759 -1.3217 47 1 10.6915 7.6895 -0.1521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099863081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:10 Heat of formation + Delta-G solvation = -143.588996 kcal Electronic energy + Delta-G solvation = -28139.079183 eV Core-core repulsion = 23936.857573 eV Total energy + Delta-G solvation = -4202.221610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.23586 -39.74545 -38.11887 -37.78913 -35.40666 -34.82499 -34.33779 -32.26782 -31.50236 -29.60507 -29.15861 -28.77690 -26.43800 -25.25130 -23.70703 -22.35606 -21.72951 -21.12121 -20.13508 -19.36784 -17.80612 -17.37446 -17.23957 -16.80172 -16.75957 -16.10247 -15.96208 -15.50405 -15.45072 -14.95917 -14.77061 -14.74956 -13.96221 -13.91379 -13.66829 -13.59951 -13.36802 -13.18531 -12.81905 -12.63453 -12.24263 -12.09304 -12.03102 -11.93553 -11.71329 -11.27904 -11.17266 -10.80801 -10.62444 -10.50026 -10.29081 -10.22939 -10.15137 -10.08138 -9.83343 -9.62394 -9.41299 -9.22426 -8.74008 -8.52182 -6.70174 -5.83846 -3.24354 2.29462 2.37042 2.69464 3.29666 3.34716 3.41794 3.44425 3.69301 4.28031 4.45896 4.49820 4.59701 4.64720 4.72426 4.78919 4.83617 4.88356 4.88700 5.15975 5.20569 5.28715 5.38579 5.43058 5.54459 5.62394 5.76162 5.92116 6.01601 6.03880 6.18920 6.24960 6.43995 6.48627 6.53312 6.77454 6.82162 6.95717 7.10561 7.14430 7.40018 7.67175 7.75968 7.89276 8.19227 8.34059 8.40374 9.15736 9.78877 10.35711 11.25137 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.046215 B = 0.001801 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.720104 B =15543.511585 C =15710.911188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.510 3.490 5 O -0.513 6.513 6 N -0.732 5.732 7 C 0.136 3.864 8 C -0.153 4.153 9 C 0.512 3.488 10 O -0.540 6.540 11 N -0.717 5.717 12 C 0.162 3.838 13 H 0.091 0.909 14 C -0.136 4.136 15 C 0.147 3.853 16 N -0.582 5.582 17 C -0.243 4.243 18 H 0.065 0.935 19 C -0.001 4.001 20 N -0.907 5.907 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.145 3.855 26 C 0.074 3.926 27 H 0.043 0.957 28 O -0.561 6.561 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.400 0.600 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.402 0.598 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.020 0.980 43 H 0.057 0.943 44 H 0.253 0.747 45 H 0.096 0.904 46 H 0.027 0.973 47 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.985 -1.142 -0.969 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.386 6.386 6 N -0.386 5.386 7 C 0.012 3.988 8 C -0.194 4.194 9 C 0.297 3.703 10 O -0.417 6.417 11 N -0.367 5.367 12 C 0.058 3.942 13 H 0.109 0.891 14 C -0.176 4.176 15 C 0.020 3.980 16 N -0.304 5.304 17 C -0.373 4.373 18 H 0.083 0.917 19 C -0.199 4.199 20 N -0.552 5.552 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.018 3.982 26 C 0.012 3.988 27 H 0.061 0.939 28 O -0.366 6.366 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.234 0.766 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.236 0.764 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.114 0.886 46 H 0.045 0.955 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -26.268 -3.330 -0.730 26.488 hybrid contribution 0.238 2.402 -0.092 2.416 sum -26.030 -0.928 -0.822 26.060 Atomic orbital electron populations 1.22854 0.80233 1.03470 1.00137 1.88036 1.19888 1.25107 1.95417 1.22234 0.91565 0.87155 1.02666 1.20244 0.88660 0.84608 0.76978 1.90781 1.74529 1.26423 1.46908 1.45864 1.07312 1.08695 1.76760 1.21060 0.77476 0.95797 1.04424 1.21807 0.93705 0.98870 1.04998 1.20250 0.88663 0.84794 0.76639 1.90755 1.74929 1.26478 1.49507 1.46200 1.07695 1.08580 1.74265 1.21027 0.77451 0.97406 0.98335 0.89139 1.22297 0.98791 1.01073 0.95463 1.20903 0.89975 0.90374 0.96703 1.43853 1.42380 1.30003 1.14211 1.19173 1.04396 1.22253 0.91460 0.91696 1.25017 0.97145 1.01119 0.96593 1.70020 1.36351 1.41437 1.07420 0.86292 0.80203 0.82185 0.78081 1.21430 1.21651 1.20512 1.21351 0.87326 1.02187 0.87359 1.22765 0.98897 0.85418 0.91684 0.93897 1.86338 1.76892 1.17229 1.56154 0.88990 0.93744 0.93745 0.90140 0.90160 0.76645 0.90271 0.90260 0.88253 0.88335 0.76409 0.92870 0.91241 0.96192 0.92435 0.93653 0.88631 0.95493 0.77804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.55 10.24 -55.14 -0.56 -4.11 16 3 C 0.04 0.29 6.42 36.01 0.23 0.52 16 4 C 0.51 5.27 7.91 -10.98 -0.09 5.18 16 5 O -0.51 -8.20 16.50 -14.35 -0.24 -8.44 16 6 N -0.73 -5.44 5.56 -60.29 -0.33 -5.77 16 7 C 0.14 1.38 4.96 -4.04 -0.02 1.36 16 8 C -0.15 -1.23 5.81 -27.88 -0.16 -1.39 16 9 C 0.51 6.77 7.79 -10.99 -0.09 6.68 16 10 O -0.54 -9.56 15.64 5.56 0.09 -9.48 16 11 N -0.72 -9.54 5.05 -53.77 -0.27 -9.81 16 12 C 0.16 2.75 2.20 -67.89 -0.15 2.60 16 13 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 14 C -0.14 -2.52 5.51 -26.61 -0.15 -2.67 16 15 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 16 N -0.58 -14.14 2.94 -172.57 -0.51 -14.65 16 17 C -0.24 -6.50 9.58 -15.06 -0.14 -6.65 16 18 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 19 C 0.00 -0.02 4.92 -17.43 -0.09 -0.11 16 20 N -0.91 -25.40 11.18 55.49 0.62 -24.78 16 21 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.14 3.23 4.91 -3.93 -0.02 3.21 16 26 C 0.07 1.28 3.37 -26.83 -0.09 1.19 16 27 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 28 O -0.56 -9.38 12.08 -35.23 -0.43 -9.80 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.40 1.35 8.47 -40.82 -0.35 1.00 16 35 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.40 4.44 8.25 -40.82 -0.34 4.11 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.35 7.61 -51.93 -0.40 0.95 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.22 7.93 -51.92 -0.41 0.81 16 44 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.10 2.33 6.05 -51.93 -0.31 2.02 16 46 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 47 H 0.38 5.44 9.08 45.56 0.41 5.85 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -36.54 387.95 -7.31 -43.85 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.82 Total: 6.73 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 0.33 Total: 14.34 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.49 Total: -55.01 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -1.14 Total: -31.83 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.54 -7.31 -43.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.740 kcal (2) G-P(sol) polarization free energy of solvation -36.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds