Wall clock time and date at job start Tue Mar 31 2020 04:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99921 * 2 1 4 4 C 1.50703 * 109.46912 * 180.02562 * 3 2 1 5 5 O 1.21281 * 120.00237 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99781 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99677 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.47073 * 180.02562 * 7 6 4 9 9 C 1.50694 * 109.47340 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00075 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00035 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00084 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46298 * 34.96854 * 12 11 9 14 14 C 1.53044 * 109.45960 * 274.99582 * 12 11 9 15 15 C 1.53188 * 109.31144 * 178.61208 * 14 12 11 16 16 N 1.46924 * 108.77660 * 54.63990 * 15 14 12 17 17 C 1.36935 * 120.63266 * 126.36881 * 16 15 14 18 18 H 1.08010 * 119.99658 * 332.45023 * 17 16 15 19 19 C 1.38810 * 120.00425 * 152.18100 * 17 16 15 20 20 N 1.31619 * 119.99248 * 343.15714 * 19 17 16 21 21 Si 1.86791 * 120.00349 * 163.16058 * 19 17 16 22 22 H 1.48506 * 109.47397 * 89.99703 * 21 19 17 23 23 H 1.48497 * 109.47016 * 209.99796 * 21 19 17 24 24 H 1.48496 * 109.47229 * 329.99581 * 21 19 17 25 25 C 1.46927 * 118.73666 * 306.64008 * 16 15 14 26 26 C 1.52761 * 109.00479 * 53.30932 * 25 16 15 27 27 H 1.09011 * 109.58521 * 185.53519 * 26 25 16 28 28 O 1.42892 * 109.36258 * 65.50137 * 26 25 16 29 29 H 1.09003 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46899 * 300.00068 * 1 2 3 31 31 H 1.08991 * 109.47404 * 60.00281 * 1 2 3 32 32 H 1.09002 * 109.47193 * 60.00126 * 3 2 1 33 33 H 1.08999 * 109.46899 * 299.99808 * 3 2 1 34 34 H 0.96995 * 120.00304 * 0.02562 * 6 4 3 35 35 H 1.09002 * 109.47192 * 60.00437 * 7 6 4 36 36 H 1.08999 * 109.47181 * 299.99947 * 7 6 4 37 37 H 1.09002 * 109.46762 * 60.00165 * 8 7 6 38 38 H 1.09002 * 109.47085 * 300.00547 * 8 7 6 39 39 H 0.97001 * 120.00562 * 359.97438 * 11 9 8 40 40 H 1.09003 * 109.49401 * 58.66341 * 14 12 11 41 41 H 1.08993 * 109.49870 * 298.56518 * 14 12 11 42 42 H 1.09004 * 109.59286 * 294.85005 * 15 14 12 43 43 H 1.09012 * 109.58665 * 174.42760 * 15 14 12 44 44 H 0.97005 * 119.99823 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.58334 * 173.14400 * 25 16 15 46 46 H 1.09008 * 109.58397 * 293.57061 * 25 16 15 47 47 H 0.96707 * 114.00152 * 60.15083 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0013 7 6 5.7369 2.1811 -0.0013 8 6 6.3592 3.5789 -0.0014 9 6 7.8615 3.4599 -0.0021 10 8 8.3831 2.3650 -0.0030 11 7 8.6254 4.5702 -0.0018 12 6 10.0858 4.4545 -0.0031 13 1 10.3809 3.5867 -0.5930 14 6 10.5853 4.2878 1.4339 15 6 12.1092 4.1325 1.4258 16 7 12.6971 5.2738 0.7113 17 6 13.6690 6.0391 1.2986 18 1 13.7109 6.1265 2.3743 19 6 14.6036 6.6981 0.5118 20 7 14.7751 6.3418 -0.7436 21 14 15.6178 8.0902 1.2346 22 1 16.8666 7.5404 1.8208 23 1 15.9592 9.0613 0.1643 24 1 14.8340 8.7757 2.2933 25 6 12.2181 5.5820 -0.6431 26 6 10.6968 5.7177 -0.6139 27 1 10.3221 5.8488 -1.6291 28 8 10.3375 6.8520 0.1774 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8594 3.1725 -0.0009 35 1 6.0584 1.6398 -0.8911 36 1 6.0585 1.6406 0.8889 37 1 6.0376 4.1198 0.8886 38 1 6.0375 4.1198 -0.8914 39 1 8.2083 5.4459 -0.0015 40 1 10.1315 3.4009 1.8762 41 1 10.3123 5.1665 2.0182 42 1 12.3795 3.2058 0.9193 43 1 12.4801 4.1127 2.4507 44 1 15.4285 6.8020 -1.2934 45 1 12.6607 6.5183 -0.9829 46 1 12.4974 4.7759 -1.3217 47 1 10.6915 7.6895 -0.1521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099863081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:08 Heat of formation + Delta-G solvation = -175.545761 kcal Electronic energy + Delta-G solvation = -28140.464932 eV Core-core repulsion = 23936.857573 eV Total energy + Delta-G solvation = -4203.607359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.23635 -40.73786 -39.50177 -38.42527 -36.48606 -36.28537 -35.66884 -33.93409 -32.50009 -31.09488 -30.69995 -29.51884 -27.22095 -26.66624 -24.82685 -23.91055 -23.28023 -21.90643 -21.29325 -20.85256 -19.15677 -18.48398 -18.09051 -17.59264 -17.42176 -17.38566 -17.06162 -16.80323 -16.63834 -16.27543 -15.69039 -15.64074 -15.48249 -15.30520 -15.16505 -14.87231 -14.50256 -14.27734 -14.03136 -13.76873 -13.64091 -13.17527 -13.11935 -12.93345 -12.75751 -12.61465 -12.46055 -12.38482 -12.33565 -12.22809 -12.01162 -11.82209 -11.44435 -11.07151 -10.84775 -10.74428 -10.70397 -10.58484 -10.20533 -9.98252 -8.67160 -7.87406 -5.31428 1.48277 1.50575 1.54454 1.60288 1.65799 1.69382 2.33104 2.52412 3.16402 3.26049 3.41122 3.59511 3.66180 3.81879 3.87587 4.01398 4.05089 4.09314 4.23153 4.31722 4.35839 4.43090 4.52059 4.53271 4.60346 4.60855 4.76935 4.85189 4.89812 4.90745 4.93967 4.97415 5.07113 5.18980 5.32257 5.43728 5.53602 5.56748 5.65505 6.06700 6.37329 6.54150 6.64155 6.93361 7.15356 7.22858 7.31994 7.83032 8.36090 9.19156 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.046215 B = 0.001801 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.720104 B =15543.511585 C =15710.911188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.047 3.953 4 C 0.502 3.498 5 O -0.583 6.583 6 N -0.707 5.707 7 C 0.140 3.860 8 C -0.133 4.133 9 C 0.507 3.493 10 O -0.591 6.591 11 N -0.704 5.704 12 C 0.167 3.833 13 H 0.069 0.931 14 C -0.119 4.119 15 C 0.143 3.857 16 N -0.597 5.597 17 C -0.256 4.256 18 H 0.061 0.939 19 C -0.046 4.046 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.291 1.291 23 H -0.290 1.290 24 H -0.271 1.271 25 C 0.148 3.852 26 C 0.093 3.907 27 H 0.071 0.929 28 O -0.560 6.560 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.425 0.575 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.418 0.582 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.008 0.992 43 H 0.054 0.946 44 H 0.251 0.749 45 H 0.073 0.927 46 H 0.000 1.000 47 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.047 1.515 -0.658 30.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.032 4.032 4 C 0.289 3.711 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.015 3.985 8 C -0.172 4.172 9 C 0.295 3.705 10 O -0.471 6.471 11 N -0.356 5.356 12 C 0.062 3.938 13 H 0.087 0.913 14 C -0.159 4.159 15 C 0.016 3.984 16 N -0.320 5.320 17 C -0.386 4.386 18 H 0.079 0.921 19 C -0.242 4.242 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.218 1.218 23 H -0.216 1.216 24 H -0.196 1.196 25 C 0.022 3.978 26 C 0.032 3.968 27 H 0.089 0.911 28 O -0.367 6.367 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.263 0.737 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.255 0.745 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.026 0.974 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.018 0.982 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -29.405 -0.580 -0.412 29.413 hybrid contribution 1.197 1.524 -0.178 1.946 sum -28.208 0.944 -0.589 28.230 Atomic orbital electron populations 1.23027 0.78178 1.04048 1.01810 1.87976 1.22258 1.27180 1.95843 1.22409 0.88244 0.86697 1.05829 1.21138 0.90601 0.83972 0.75388 1.90752 1.76006 1.29126 1.50294 1.45597 1.06001 1.09509 1.75195 1.20790 0.79205 0.96801 1.01710 1.21735 0.88991 0.97905 1.08603 1.21153 0.90792 0.83634 0.74920 1.90752 1.76289 1.28479 1.51605 1.45939 1.05832 1.09701 1.74090 1.20652 0.80009 0.96400 0.96756 0.91298 1.22057 0.96251 1.00960 0.96624 1.20982 0.92152 0.89158 0.96068 1.44071 1.42485 1.30604 1.14846 1.19428 1.05069 1.22520 0.91558 0.92087 1.25704 0.98320 1.03174 0.96967 1.70170 1.37055 1.42443 1.08545 0.85276 0.78421 0.79298 0.77378 1.21817 1.21594 1.19570 1.21258 0.90790 0.99922 0.85879 1.22394 0.95103 0.85987 0.93321 0.91108 1.86308 1.76546 1.17518 1.56287 0.89182 0.92021 0.91987 0.86741 0.86700 0.73654 0.93148 0.93305 0.84623 0.84353 0.74457 0.92600 0.91412 0.97441 0.92703 0.94020 0.90855 0.98157 0.76447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -7.54 10.24 -129.94 -1.33 -8.87 16 3 C 0.05 0.50 6.42 71.24 0.46 0.96 16 4 C 0.50 9.85 7.91 87.66 0.69 10.54 16 5 O -0.58 -19.44 16.50 16.00 0.26 -19.17 16 6 N -0.71 -8.80 5.56 -463.05 -2.57 -11.38 16 7 C 0.14 2.69 4.96 86.38 0.43 3.12 16 8 C -0.13 -1.64 5.81 29.85 0.17 -1.47 16 9 C 0.51 12.49 7.79 87.66 0.68 13.17 16 10 O -0.59 -21.15 15.64 -3.03 -0.05 -21.19 16 11 N -0.70 -16.95 5.05 -442.41 -2.23 -19.18 16 12 C 0.17 5.55 2.20 45.02 0.10 5.65 16 13 H 0.07 2.63 7.58 -2.38 -0.02 2.62 16 14 C -0.12 -4.35 5.51 30.67 0.17 -4.18 16 15 C 0.14 6.26 6.52 86.36 0.56 6.82 16 16 N -0.60 -29.48 2.94 -699.90 -2.06 -31.54 16 17 C -0.26 -13.80 9.58 84.03 0.81 -13.00 16 18 H 0.06 3.28 7.89 -2.91 -0.02 3.26 16 19 C -0.05 -2.51 4.92 84.86 0.42 -2.09 16 20 N -0.94 -53.37 11.18 21.65 0.24 -53.12 16 21 Si 0.97 43.58 29.59 68.60 2.03 45.61 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 C 0.15 6.70 4.91 86.22 0.42 7.12 16 26 C 0.09 3.12 3.37 30.53 0.10 3.22 16 27 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 28 O -0.56 -17.35 12.08 -148.98 -1.80 -19.14 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.42 0.94 8.47 -92.71 -0.79 0.15 16 35 H 0.05 1.27 8.10 -2.39 -0.02 1.26 16 36 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.14 0.83 8.14 -2.39 -0.02 0.82 16 38 H 0.14 0.74 8.14 -2.39 -0.02 0.73 16 39 H 0.42 7.51 8.25 -92.71 -0.77 6.74 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.07 2.52 7.61 -2.39 -0.02 2.50 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.05 2.37 7.93 -2.38 -0.02 2.36 16 44 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 45 H 0.07 3.64 6.05 -2.39 -0.01 3.62 16 46 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 47 H 0.39 10.28 9.08 -74.05 -0.67 9.61 16 Total: -1.00 -85.60 387.95 -2.46 -88.07 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -1.22 Total: 18.61 kcal Atomic # 6 Polarization: 25.06 SS G_CDS: 6.26 Total: 31.33 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -6.62 Total: -115.22 kcal Atomic # 8 Polarization: -65.47 SS G_CDS: -2.91 Total: -68.39 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -85.60 -2.46 -88.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.480 kcal (2) G-P(sol) polarization free energy of solvation -85.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds