Wall clock time and date at job start Tue Mar 31 2020 04:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99721 * 2 1 4 4 C 1.50697 * 109.46927 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00117 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99914 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99848 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.46930 * 179.97438 * 7 6 4 9 9 C 1.50708 * 109.47020 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00093 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99938 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99848 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.44638 * 324.96547 * 12 11 9 14 14 C 1.53035 * 109.45813 * 84.93196 * 12 11 9 15 15 C 1.52764 * 109.37934 * 181.25842 * 14 12 11 16 16 N 1.46926 * 109.01135 * 305.58582 * 15 14 12 17 17 C 1.36928 * 120.63170 * 233.58503 * 16 15 14 18 18 H 1.08001 * 120.00114 * 151.80747 * 17 16 15 19 19 C 1.38812 * 120.00102 * 331.80110 * 17 16 15 20 20 N 1.31617 * 120.00308 * 335.56350 * 19 17 16 21 21 Si 1.86804 * 119.99777 * 155.28945 * 19 17 16 22 22 H 1.48503 * 109.46743 * 180.27744 * 21 19 17 23 23 H 1.48500 * 109.47225 * 300.27498 * 21 19 17 24 24 H 1.48501 * 109.47206 * 60.27771 * 21 19 17 25 25 C 1.46929 * 118.73483 * 53.31107 * 16 15 14 26 26 C 1.53040 * 109.45829 * 205.00299 * 12 11 9 27 27 H 1.09001 * 109.49505 * 298.56262 * 26 12 11 28 28 O 1.42897 * 109.50012 * 58.66025 * 26 12 11 29 29 H 1.09005 * 109.46952 * 60.00090 * 1 2 3 30 30 H 1.08998 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47466 * 300.00401 * 1 2 3 32 32 H 1.08997 * 109.47171 * 59.99871 * 3 2 1 33 33 H 1.09001 * 109.46696 * 299.99648 * 3 2 1 34 34 H 0.96993 * 120.00311 * 359.97438 * 6 4 3 35 35 H 1.09000 * 109.47629 * 59.99819 * 7 6 4 36 36 H 1.09001 * 109.47211 * 299.99606 * 7 6 4 37 37 H 1.09003 * 109.47287 * 60.00249 * 8 7 6 38 38 H 1.08999 * 109.47369 * 299.99884 * 8 7 6 39 39 H 0.97003 * 119.99802 * 0.02562 * 11 9 8 40 40 H 1.08995 * 109.50055 * 301.33289 * 14 12 11 41 41 H 1.09001 * 109.50167 * 61.43701 * 14 12 11 42 42 H 1.09003 * 109.51000 * 185.70458 * 15 14 12 43 43 H 1.09005 * 109.43274 * 65.43079 * 15 14 12 44 44 H 0.97007 * 119.99706 * 353.96844 * 20 19 17 45 45 H 1.09001 * 109.58752 * 66.42659 * 25 16 15 46 46 H 1.08997 * 109.58400 * 186.71234 * 25 16 15 47 47 H 0.96697 * 113.99811 * 179.83931 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 8 4.0340 0.0916 -0.0006 6 7 4.2763 2.2969 -0.0013 7 6 5.7368 2.1812 -0.0013 8 6 6.3591 3.5790 -0.0027 9 6 7.8614 3.4600 -0.0021 10 8 8.3830 2.3651 -0.0012 11 7 8.6253 4.5704 -0.0037 12 6 10.0858 4.4547 -0.0037 13 1 10.3812 3.5878 0.5875 14 6 10.5838 4.2854 -1.4408 15 6 12.1038 4.1336 -1.4360 16 7 12.6964 5.2728 -0.7220 17 6 13.6675 6.0370 -1.3116 18 1 13.7800 7.0750 -1.0351 19 6 14.5077 5.4777 -2.2646 20 7 14.7219 4.1791 -2.2722 21 14 15.3283 6.5672 -3.5409 22 1 16.1639 5.7322 -4.4409 23 1 14.2881 7.2657 -4.3380 24 1 16.1854 7.5698 -2.8586 25 6 12.2226 5.5800 0.6345 26 6 10.6973 5.7189 0.6044 27 1 10.4227 6.5831 -0.0004 28 8 10.2079 5.8928 1.9356 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8463 -0.8900 34 1 3.8592 3.1726 -0.0017 35 1 6.0585 1.6398 -0.8910 36 1 6.0585 1.6408 0.8890 37 1 6.0375 4.1207 0.8868 38 1 6.0374 4.1190 -0.8932 39 1 8.2081 5.4461 -0.0048 40 1 10.1297 3.3977 -1.8811 41 1 10.3102 5.1631 -2.0265 42 1 12.4710 4.1146 -2.4622 43 1 12.3740 3.2057 -0.9319 44 1 14.3643 3.6244 -1.5613 45 1 12.5026 4.7724 1.3110 46 1 12.6701 6.5137 0.9751 47 1 10.5567 6.6754 2.3839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099863082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:18 Heat of formation + Delta-G solvation = -147.677951 kcal Electronic energy + Delta-G solvation = -28086.595936 eV Core-core repulsion = 23884.197015 eV Total energy + Delta-G solvation = -4202.398920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.25181 -39.78967 -38.23273 -37.80811 -35.66952 -35.41410 -34.46186 -32.24867 -31.49191 -30.09688 -29.13151 -28.40693 -26.42659 -25.15448 -23.71230 -22.57479 -21.73271 -21.12517 -20.26293 -19.48513 -17.86790 -17.57772 -17.30039 -16.86365 -16.81327 -16.79720 -16.04517 -15.93147 -15.50053 -14.81862 -14.77022 -14.54853 -14.17346 -13.90783 -13.62936 -13.61679 -13.45447 -13.37385 -12.91206 -12.72338 -12.44041 -12.20900 -12.16164 -11.93639 -11.91564 -11.69157 -10.96130 -10.89682 -10.73947 -10.45294 -10.28876 -10.20646 -10.15589 -10.04429 -9.86218 -9.72604 -9.41342 -9.35900 -8.84691 -8.42838 -7.00960 -6.14786 -3.34048 2.29786 2.36634 2.68894 3.24834 3.44805 3.47915 3.66514 3.68193 4.26460 4.29591 4.49130 4.54289 4.59559 4.64766 4.77469 4.80795 4.83848 4.88718 5.12575 5.16107 5.20552 5.20830 5.37981 5.43628 5.60883 5.62985 5.76430 5.79876 5.91838 6.03206 6.14383 6.32625 6.34825 6.48014 6.48864 6.58516 6.70459 6.94236 7.10199 7.10865 7.59305 7.76444 7.89564 7.91574 8.30707 8.48445 9.00213 9.74208 10.16646 11.13741 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.001913 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.351972 B =14633.719034 C =15198.907172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.510 3.490 5 O -0.512 6.512 6 N -0.732 5.732 7 C 0.136 3.864 8 C -0.152 4.152 9 C 0.515 3.485 10 O -0.537 6.537 11 N -0.715 5.715 12 C 0.163 3.837 13 H 0.088 0.912 14 C -0.141 4.141 15 C 0.150 3.850 16 N -0.594 5.594 17 C -0.358 4.358 18 H 0.057 0.943 19 C -0.021 4.021 20 N -0.911 5.911 21 Si 1.066 2.934 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.122 3.878 26 C 0.081 3.919 27 H 0.057 0.943 28 O -0.571 6.571 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.399 0.601 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.397 0.603 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.023 0.977 44 H 0.271 0.729 45 H 0.027 0.973 46 H 0.062 0.938 47 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.843 3.729 5.398 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.386 6.386 6 N -0.386 5.386 7 C 0.012 3.988 8 C -0.193 4.193 9 C 0.299 3.701 10 O -0.413 6.413 11 N -0.365 5.365 12 C 0.059 3.941 13 H 0.106 0.894 14 C -0.182 4.182 15 C 0.024 3.976 16 N -0.320 5.320 17 C -0.487 4.487 18 H 0.075 0.925 19 C -0.224 4.224 20 N -0.550 5.550 21 Si 0.895 3.105 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.005 4.005 26 C 0.020 3.980 27 H 0.075 0.925 28 O -0.375 6.375 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.233 0.767 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.041 0.959 44 H 0.082 0.918 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -25.282 1.376 3.897 25.618 hybrid contribution -1.313 1.893 1.578 2.792 sum -26.595 3.269 5.475 27.349 Atomic orbital electron populations 1.22854 0.80232 1.03476 1.00128 1.88038 1.19889 1.25095 1.95415 1.22230 0.91553 0.87162 1.02654 1.20245 0.88665 0.84607 0.76991 1.90783 1.74522 1.26418 1.46861 1.45858 1.07290 1.08690 1.76794 1.21059 0.77491 0.95763 1.04470 1.21797 0.93576 0.98940 1.04966 1.20212 0.88646 0.84696 0.76498 1.90764 1.74897 1.26443 1.49243 1.46044 1.07367 1.08448 1.74616 1.20971 0.77749 0.98133 0.97276 0.89397 1.22402 0.99812 1.01559 0.94388 1.20919 0.88322 0.89544 0.98864 1.44079 1.43099 1.34394 1.10388 1.19943 1.11429 0.92716 1.24570 0.92505 1.25907 0.95976 0.98504 1.01968 1.70782 1.42463 1.05551 1.36213 0.83517 0.75967 0.74619 0.76370 1.20987 1.22006 1.21923 1.21523 0.90587 0.99549 0.88862 1.22741 0.96310 0.96535 0.82425 0.92515 1.86470 1.71929 1.50596 1.28526 0.93737 0.88984 0.93759 0.90158 0.90149 0.76667 0.90217 0.90264 0.88275 0.88283 0.76964 0.91622 0.92016 0.89618 0.95926 0.91832 0.95479 0.91998 0.77882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.37 -3.62 10.24 -55.14 -0.56 -4.18 16 3 C 0.04 0.30 6.42 36.00 0.23 0.53 16 4 C 0.51 5.40 7.91 -10.99 -0.09 5.31 16 5 O -0.51 -8.36 16.50 -14.35 -0.24 -8.60 16 6 N -0.73 -5.62 5.56 -60.29 -0.33 -5.96 16 7 C 0.14 1.43 4.96 -4.04 -0.02 1.41 16 8 C -0.15 -1.26 5.81 -27.88 -0.16 -1.42 16 9 C 0.51 7.04 7.79 -10.98 -0.09 6.95 16 10 O -0.54 -9.92 15.64 5.56 0.09 -9.83 16 11 N -0.71 -9.54 4.92 -53.76 -0.26 -9.80 16 12 C 0.16 2.79 2.12 -67.89 -0.14 2.64 16 13 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 14 C -0.14 -2.67 5.64 -26.83 -0.15 -2.83 16 15 C 0.15 3.48 4.66 -3.93 -0.02 3.46 16 16 N -0.59 -14.32 2.85 -172.58 -0.49 -14.82 16 17 C -0.36 -9.62 9.49 -15.06 -0.14 -9.76 16 18 H 0.06 1.51 7.94 -52.49 -0.42 1.10 16 19 C -0.02 -0.57 4.70 -17.43 -0.08 -0.65 16 20 N -0.91 -26.91 12.41 55.49 0.69 -26.22 16 21 Si 1.07 24.52 29.99 -169.99 -5.10 19.43 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.12 2.44 6.14 -3.71 -0.02 2.42 16 26 C 0.08 1.32 3.14 -26.61 -0.08 1.23 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 O -0.57 -8.05 13.16 -35.23 -0.46 -8.51 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.40 1.41 8.47 -40.82 -0.35 1.07 16 35 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 4.10 8.60 -40.82 -0.35 3.75 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.09 2.22 6.32 -51.93 -0.33 1.89 16 43 H 0.02 0.55 7.86 -51.93 -0.41 0.14 16 44 H 0.27 8.11 6.70 -40.82 -0.27 7.84 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 47 H 0.37 3.75 9.08 45.56 0.41 4.16 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -38.12 388.62 -7.28 -45.40 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.80 Total: 6.67 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 0.34 Total: 10.57 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.40 Total: -56.80 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.18 Total: -31.13 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.10 Total: 19.43 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.12 -7.28 -45.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.277 kcal (2) G-P(sol) polarization free energy of solvation -38.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds