Wall clock time and date at job start Tue Mar 31 2020 04:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99721 * 2 1 4 4 C 1.50697 * 109.46927 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00117 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99914 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99848 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.46930 * 179.97438 * 7 6 4 9 9 C 1.50708 * 109.47020 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00093 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99938 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99848 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.44638 * 324.96547 * 12 11 9 14 14 C 1.53035 * 109.45813 * 84.93196 * 12 11 9 15 15 C 1.52764 * 109.37934 * 181.25842 * 14 12 11 16 16 N 1.46926 * 109.01135 * 305.58582 * 15 14 12 17 17 C 1.36928 * 120.63170 * 233.58503 * 16 15 14 18 18 H 1.08001 * 120.00114 * 151.80747 * 17 16 15 19 19 C 1.38812 * 120.00102 * 331.80110 * 17 16 15 20 20 N 1.31617 * 120.00308 * 335.56350 * 19 17 16 21 21 Si 1.86804 * 119.99777 * 155.28945 * 19 17 16 22 22 H 1.48503 * 109.46743 * 180.27744 * 21 19 17 23 23 H 1.48500 * 109.47225 * 300.27498 * 21 19 17 24 24 H 1.48501 * 109.47206 * 60.27771 * 21 19 17 25 25 C 1.46929 * 118.73483 * 53.31107 * 16 15 14 26 26 C 1.53040 * 109.45829 * 205.00299 * 12 11 9 27 27 H 1.09001 * 109.49505 * 298.56262 * 26 12 11 28 28 O 1.42897 * 109.50012 * 58.66025 * 26 12 11 29 29 H 1.09005 * 109.46952 * 60.00090 * 1 2 3 30 30 H 1.08998 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47466 * 300.00401 * 1 2 3 32 32 H 1.08997 * 109.47171 * 59.99871 * 3 2 1 33 33 H 1.09001 * 109.46696 * 299.99648 * 3 2 1 34 34 H 0.96993 * 120.00311 * 359.97438 * 6 4 3 35 35 H 1.09000 * 109.47629 * 59.99819 * 7 6 4 36 36 H 1.09001 * 109.47211 * 299.99606 * 7 6 4 37 37 H 1.09003 * 109.47287 * 60.00249 * 8 7 6 38 38 H 1.08999 * 109.47369 * 299.99884 * 8 7 6 39 39 H 0.97003 * 119.99802 * 0.02562 * 11 9 8 40 40 H 1.08995 * 109.50055 * 301.33289 * 14 12 11 41 41 H 1.09001 * 109.50167 * 61.43701 * 14 12 11 42 42 H 1.09003 * 109.51000 * 185.70458 * 15 14 12 43 43 H 1.09005 * 109.43274 * 65.43079 * 15 14 12 44 44 H 0.97007 * 119.99706 * 353.96844 * 20 19 17 45 45 H 1.09001 * 109.58752 * 66.42659 * 25 16 15 46 46 H 1.08997 * 109.58400 * 186.71234 * 25 16 15 47 47 H 0.96697 * 113.99811 * 179.83931 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 8 4.0340 0.0916 -0.0006 6 7 4.2763 2.2969 -0.0013 7 6 5.7368 2.1812 -0.0013 8 6 6.3591 3.5790 -0.0027 9 6 7.8614 3.4600 -0.0021 10 8 8.3830 2.3651 -0.0012 11 7 8.6253 4.5704 -0.0037 12 6 10.0858 4.4547 -0.0037 13 1 10.3812 3.5878 0.5875 14 6 10.5838 4.2854 -1.4408 15 6 12.1038 4.1336 -1.4360 16 7 12.6964 5.2728 -0.7220 17 6 13.6675 6.0370 -1.3116 18 1 13.7800 7.0750 -1.0351 19 6 14.5077 5.4777 -2.2646 20 7 14.7219 4.1791 -2.2722 21 14 15.3283 6.5672 -3.5409 22 1 16.1639 5.7322 -4.4409 23 1 14.2881 7.2657 -4.3380 24 1 16.1854 7.5698 -2.8586 25 6 12.2226 5.5800 0.6345 26 6 10.6973 5.7189 0.6044 27 1 10.4227 6.5831 -0.0004 28 8 10.2079 5.8928 1.9356 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8463 -0.8900 34 1 3.8592 3.1726 -0.0017 35 1 6.0585 1.6398 -0.8910 36 1 6.0585 1.6408 0.8890 37 1 6.0375 4.1207 0.8868 38 1 6.0374 4.1190 -0.8932 39 1 8.2081 5.4461 -0.0048 40 1 10.1297 3.3977 -1.8811 41 1 10.3102 5.1631 -2.0265 42 1 12.4710 4.1146 -2.4622 43 1 12.3740 3.2057 -0.9319 44 1 14.3643 3.6244 -1.5613 45 1 12.5026 4.7724 1.3110 46 1 12.6701 6.5137 0.9751 47 1 10.5567 6.6754 2.3839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099863082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:14 Heat of formation + Delta-G solvation = -181.760270 kcal Electronic energy + Delta-G solvation = -28088.073856 eV Core-core repulsion = 23884.197015 eV Total energy + Delta-G solvation = -4203.876840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -41.30841 -40.78166 -39.60740 -38.44275 -37.21723 -36.34013 -35.81593 -33.89664 -32.58440 -31.63551 -30.23354 -29.47742 -27.17328 -26.65621 -24.89332 -24.05312 -23.30945 -21.94098 -21.48990 -20.98634 -19.54827 -18.54810 -18.22154 -18.07933 -17.62509 -17.41495 -17.27636 -16.78912 -16.37034 -16.29334 -15.87803 -15.70071 -15.45796 -15.43625 -15.28249 -14.90859 -14.54973 -14.43998 -14.04997 -13.98687 -13.65666 -13.61022 -13.15251 -12.97951 -12.74174 -12.58724 -12.49738 -12.47939 -12.34751 -12.15896 -11.92137 -11.77173 -11.35121 -11.18740 -11.08207 -10.85257 -10.75732 -10.48225 -10.23970 -10.08363 -9.02437 -8.29067 -5.47037 1.52303 1.59814 1.62035 1.64927 1.67591 1.85873 2.25968 2.63164 3.01843 3.14638 3.21699 3.48584 3.56763 3.76065 3.79076 3.94487 3.98539 4.05141 4.09705 4.21498 4.25475 4.30264 4.34476 4.47917 4.50988 4.59261 4.59499 4.70038 4.81804 4.84158 4.88328 4.88805 4.91715 4.96867 5.08584 5.26480 5.29453 5.43792 5.79747 6.05382 6.32490 6.51170 6.57408 6.79733 6.98313 7.20778 7.27853 7.70178 8.14245 8.96360 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.001913 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.351972 B =14633.719034 C =15198.907172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.048 3.952 4 C 0.501 3.499 5 O -0.584 6.584 6 N -0.707 5.707 7 C 0.139 3.861 8 C -0.130 4.130 9 C 0.507 3.493 10 O -0.594 6.594 11 N -0.700 5.700 12 C 0.170 3.830 13 H 0.052 0.948 14 C -0.124 4.124 15 C 0.157 3.843 16 N -0.610 5.610 17 C -0.358 4.358 18 H 0.063 0.937 19 C -0.076 4.076 20 N -0.944 5.944 21 Si 1.118 2.882 22 H -0.297 1.297 23 H -0.275 1.275 24 H -0.273 1.273 25 C 0.117 3.883 26 C 0.105 3.895 27 H 0.077 0.923 28 O -0.568 6.568 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.425 0.575 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.418 0.582 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.053 0.947 43 H -0.005 1.005 44 H 0.252 0.748 45 H 0.009 0.991 46 H 0.073 0.927 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.100 7.727 5.699 31.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.031 4.031 4 C 0.289 3.711 5 O -0.462 6.462 6 N -0.362 5.362 7 C 0.014 3.986 8 C -0.170 4.170 9 C 0.295 3.705 10 O -0.474 6.474 11 N -0.351 5.351 12 C 0.064 3.936 13 H 0.070 0.930 14 C -0.164 4.164 15 C 0.031 3.969 16 N -0.336 5.336 17 C -0.487 4.487 18 H 0.081 0.919 19 C -0.273 4.273 20 N -0.585 5.585 21 Si 0.941 3.059 22 H -0.224 1.224 23 H -0.201 1.201 24 H -0.198 1.198 25 C -0.010 4.010 26 C 0.044 3.956 27 H 0.094 0.906 28 O -0.376 6.376 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.264 0.736 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.255 0.745 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.013 0.987 44 H 0.062 0.938 45 H 0.027 0.973 46 H 0.091 0.909 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -28.622 5.508 4.248 29.455 hybrid contribution -0.316 0.642 1.600 1.753 sum -28.939 6.150 5.848 30.157 Atomic orbital electron populations 1.23030 0.78145 1.04053 1.01833 1.87978 1.22292 1.27181 1.95847 1.22405 0.88124 0.86711 1.05873 1.21169 0.90660 0.83956 0.75365 1.90755 1.76029 1.29176 1.50286 1.45580 1.05890 1.09544 1.75222 1.20779 0.79327 0.96871 1.01590 1.21728 0.88668 0.97884 1.08731 1.21203 0.90923 0.83608 0.74769 1.90760 1.76359 1.28706 1.51581 1.45776 1.05456 1.09700 1.74202 1.20547 0.80405 0.97417 0.95260 0.92998 1.22140 0.96261 1.01844 0.96197 1.20683 0.91238 0.88480 0.96513 1.44270 1.43033 1.34105 1.12148 1.20276 1.11210 0.93131 1.24097 0.91910 1.27329 0.96920 0.98795 1.04227 1.70915 1.44624 1.06696 1.36275 0.82834 0.75582 0.73295 0.74142 1.22358 1.20078 1.19815 1.21716 0.93618 0.99227 0.86391 1.22234 0.92971 0.96423 0.83941 0.90565 1.86444 1.71493 1.52257 1.27366 0.91989 0.89196 0.91956 0.86628 0.86689 0.73590 0.93388 0.93388 0.84320 0.84245 0.74455 0.92154 0.90647 0.92851 0.98734 0.93848 0.97299 0.90886 0.75320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.41 -7.74 10.24 -129.94 -1.33 -9.07 16 3 C 0.05 0.52 6.42 71.23 0.46 0.98 16 4 C 0.50 10.18 7.91 87.66 0.69 10.87 16 5 O -0.58 -20.01 16.50 16.01 0.26 -19.74 16 6 N -0.71 -9.24 5.56 -463.06 -2.57 -11.81 16 7 C 0.14 2.83 4.96 86.38 0.43 3.26 16 8 C -0.13 -1.70 5.81 29.85 0.17 -1.52 16 9 C 0.51 13.14 7.79 87.66 0.68 13.83 16 10 O -0.59 -22.67 15.64 -3.03 -0.05 -22.72 16 11 N -0.70 -16.91 4.92 -442.40 -2.18 -19.08 16 12 C 0.17 5.69 2.12 45.02 0.10 5.79 16 13 H 0.05 2.15 7.58 -2.38 -0.02 2.13 16 14 C -0.12 -4.74 5.64 30.53 0.17 -4.56 16 15 C 0.16 7.65 4.66 86.22 0.40 8.05 16 16 N -0.61 -29.81 2.85 -699.92 -2.00 -31.81 16 17 C -0.36 -19.27 9.49 84.04 0.80 -18.47 16 18 H 0.06 3.27 7.94 -2.91 -0.02 3.24 16 19 C -0.08 -4.28 4.70 84.86 0.40 -3.88 16 20 N -0.94 -58.03 12.41 21.65 0.27 -57.77 16 21 Si 1.12 49.49 29.99 68.60 2.06 51.55 16 22 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 C 0.12 4.61 6.14 86.36 0.53 5.14 16 26 C 0.11 3.20 3.14 30.67 0.10 3.30 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 O -0.57 -14.16 13.16 -148.98 -1.96 -16.12 16 29 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.43 1.07 8.47 -92.71 -0.79 0.28 16 35 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 36 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 37 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.14 0.82 8.14 -2.39 -0.02 0.81 16 39 H 0.42 6.71 8.60 -92.71 -0.80 5.91 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.05 2.91 6.32 -2.39 -0.02 2.90 16 43 H -0.01 -0.28 7.86 -2.38 -0.02 -0.30 16 44 H 0.25 16.02 6.70 -92.70 -0.62 15.40 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 47 H 0.40 6.34 9.08 -74.06 -0.67 5.67 16 Total: -1.00 -92.21 388.62 -2.42 -94.63 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -1.10 Total: 17.71 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 6.18 Total: 24.25 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -6.48 Total: -120.47 kcal Atomic # 8 Polarization: -64.58 SS G_CDS: -3.07 Total: -67.65 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.06 Total: 51.55 kcal Total: -92.21 -2.42 -94.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.129 kcal (2) G-P(sol) polarization free energy of solvation -92.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds