Wall clock time and date at job start Tue Mar 31 2020 04:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00195 * 2 1 4 4 C 1.50707 * 109.47028 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99869 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99974 * 179.97438 * 4 3 2 7 7 C 1.46493 * 120.00201 * 179.72679 * 6 4 3 8 8 C 1.52999 * 109.47427 * 180.02562 * 7 6 4 9 9 C 1.50697 * 109.47222 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00045 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00039 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00094 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.45720 * 324.97049 * 12 11 9 14 14 C 1.53037 * 109.46005 * 84.92510 * 12 11 9 15 15 C 1.53188 * 109.31312 * 181.38516 * 14 12 11 16 16 N 1.46933 * 108.77876 * 305.36989 * 15 14 12 17 17 C 1.36935 * 120.63100 * 233.63063 * 16 15 14 18 18 H 1.08004 * 119.99745 * 27.66209 * 17 16 15 19 19 C 1.38806 * 120.00166 * 207.65955 * 17 16 15 20 20 N 1.31625 * 119.99836 * 17.35904 * 19 17 16 21 21 Si 1.86795 * 120.00305 * 197.36112 * 19 17 16 22 22 H 1.48497 * 109.47134 * 59.99966 * 21 19 17 23 23 H 1.48499 * 109.47285 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47395 * 299.99907 * 21 19 17 25 25 C 1.46930 * 118.73816 * 53.60098 * 16 15 14 26 26 C 1.53035 * 109.45986 * 204.99527 * 12 11 9 27 27 H 1.09001 * 109.49939 * 58.62940 * 26 12 11 28 28 O 1.42900 * 109.49719 * 298.56568 * 26 12 11 29 29 H 1.08998 * 109.47003 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46869 * 299.99739 * 1 2 3 31 31 H 1.09001 * 109.47135 * 59.99293 * 1 2 3 32 32 H 1.09001 * 109.46962 * 60.00408 * 3 2 1 33 33 H 1.08994 * 109.47151 * 299.99975 * 3 2 1 34 34 H 0.97007 * 119.99742 * 0.02562 * 6 4 3 35 35 H 1.09005 * 109.47181 * 299.99928 * 7 6 4 36 36 H 1.09002 * 109.47431 * 59.99959 * 7 6 4 37 37 H 1.09005 * 109.46570 * 299.99921 * 8 7 6 38 38 H 1.08996 * 109.47247 * 59.99829 * 8 7 6 39 39 H 0.96996 * 119.99852 * 359.97438 * 11 9 8 40 40 H 1.08995 * 109.50284 * 301.34085 * 14 12 11 41 41 H 1.09003 * 109.49573 * 61.43894 * 14 12 11 42 42 H 1.08996 * 109.59151 * 185.58065 * 15 14 12 43 43 H 1.09004 * 109.70582 * 65.22085 * 15 14 12 44 44 H 0.96992 * 119.99960 * 179.97438 * 20 19 17 45 45 H 1.08994 * 109.58343 * 186.60731 * 25 16 15 46 46 H 1.09005 * 109.58093 * 66.18498 * 25 16 15 47 47 H 0.96700 * 113.99486 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0914 -0.0015 6 7 4.2766 2.2966 -0.0013 7 6 5.7369 2.1810 0.0042 8 6 6.3593 3.5786 0.0028 9 6 7.8616 3.4596 0.0078 10 8 8.3831 2.3646 0.0124 11 7 8.6256 4.5699 0.0081 12 6 10.0860 4.4542 0.0135 13 1 10.3794 3.5878 0.6063 14 6 10.5893 4.2836 -1.4217 15 6 12.1132 4.1283 -1.4091 16 7 12.6993 5.2715 -0.6960 17 6 13.6727 6.0352 -1.2828 18 1 13.7163 6.1213 -2.3585 19 6 14.6033 6.6988 -0.4951 20 7 14.7773 6.3417 0.7598 21 14 15.6086 8.0984 -1.2159 22 1 14.6970 9.1756 -1.6784 23 1 16.5233 8.6369 -0.1773 24 1 16.4042 7.5961 -2.3646 25 6 12.2206 5.5799 0.6585 26 6 10.6954 5.7190 0.6226 27 1 10.3180 5.8528 1.6364 28 8 10.3383 6.8512 -0.1727 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8594 3.1724 -0.0009 35 1 6.0555 1.6427 0.8969 36 1 6.0617 1.6374 -0.8831 37 1 6.0408 4.1173 -0.8897 38 1 6.0346 4.1218 0.8903 39 1 8.2085 5.4456 0.0047 40 1 10.1367 3.3956 -1.8629 41 1 10.3179 5.1608 -2.0090 42 1 12.4867 4.1058 -2.4329 43 1 12.3841 3.2028 -0.9009 44 1 15.4278 6.8052 1.3101 45 1 12.6650 6.5152 0.9988 46 1 12.4982 4.7729 1.3366 47 1 10.6910 7.6895 0.1558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099863083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:23 Heat of formation + Delta-G solvation = -143.568918 kcal Electronic energy + Delta-G solvation = -28138.427924 eV Core-core repulsion = 23936.207185 eV Total energy + Delta-G solvation = -4202.220739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.23462 -39.74186 -38.10711 -37.78576 -35.40611 -34.82532 -34.33526 -32.26742 -31.50239 -29.60522 -29.14233 -28.77218 -26.43743 -25.24996 -23.70687 -22.35931 -21.72185 -21.12073 -20.13408 -19.36997 -17.80516 -17.37174 -17.23742 -16.80150 -16.75885 -16.10398 -15.96179 -15.50371 -15.45150 -14.95593 -14.77078 -14.74928 -13.96590 -13.90729 -13.66629 -13.59815 -13.36717 -13.18476 -12.81528 -12.63314 -12.24280 -12.09358 -12.02879 -11.93554 -11.71315 -11.27849 -11.17190 -10.81328 -10.62221 -10.49795 -10.29067 -10.23236 -10.15147 -10.08746 -9.83343 -9.62376 -9.41291 -9.21860 -8.73913 -8.51646 -6.70724 -5.83684 -3.24140 2.29470 2.37032 2.69472 3.29771 3.36110 3.41583 3.43085 3.69299 4.28019 4.46015 4.49844 4.59717 4.64737 4.72630 4.78911 4.83632 4.88414 4.88737 5.16012 5.20585 5.28580 5.38498 5.43500 5.54507 5.62386 5.76166 5.92298 6.00671 6.03678 6.18560 6.25013 6.44023 6.48646 6.53244 6.77674 6.82151 6.95744 7.10533 7.14469 7.40071 7.67189 7.75872 7.89281 8.19364 8.34090 8.40380 9.15700 9.78863 10.35694 11.25174 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.046152 B = 0.001801 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.542065 B =15539.465456 C =15707.830719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.510 3.490 5 O -0.513 6.513 6 N -0.732 5.732 7 C 0.136 3.864 8 C -0.153 4.153 9 C 0.512 3.488 10 O -0.539 6.539 11 N -0.717 5.717 12 C 0.162 3.838 13 H 0.091 0.909 14 C -0.136 4.136 15 C 0.147 3.853 16 N -0.582 5.582 17 C -0.244 4.244 18 H 0.065 0.935 19 C -0.001 4.001 20 N -0.907 5.907 21 Si 0.903 3.097 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.145 3.855 26 C 0.073 3.927 27 H 0.043 0.957 28 O -0.560 6.560 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.400 0.600 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.402 0.598 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.254 0.746 45 H 0.096 0.904 46 H 0.028 0.972 47 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.966 -1.155 0.952 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.386 6.386 6 N -0.386 5.386 7 C 0.012 3.988 8 C -0.194 4.194 9 C 0.297 3.703 10 O -0.417 6.417 11 N -0.367 5.367 12 C 0.058 3.942 13 H 0.109 0.891 14 C -0.176 4.176 15 C 0.020 3.980 16 N -0.305 5.305 17 C -0.374 4.374 18 H 0.083 0.917 19 C -0.199 4.199 20 N -0.552 5.552 21 Si 0.733 3.267 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.018 3.982 26 C 0.012 3.988 27 H 0.061 0.939 28 O -0.366 6.366 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.234 0.766 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.236 0.764 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.114 0.886 46 H 0.046 0.954 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -26.240 -3.348 0.716 26.463 hybrid contribution 0.221 2.415 0.080 2.427 sum -26.020 -0.932 0.796 26.049 Atomic orbital electron populations 1.22854 0.80232 1.03469 1.00137 1.88035 1.19888 1.25109 1.95417 1.22234 0.91564 0.87155 1.02665 1.20245 0.88660 0.84609 0.76978 1.90782 1.74536 1.26416 1.46912 1.45864 1.07312 1.08696 1.76754 1.21058 0.77476 0.95799 1.04424 1.21805 0.93705 0.98870 1.04999 1.20254 0.88660 0.84795 0.76638 1.90755 1.74935 1.26474 1.49504 1.46205 1.07697 1.08578 1.74270 1.21024 0.77440 0.97396 0.98347 0.89146 1.22291 0.98756 1.01060 0.95490 1.20898 0.89999 0.90341 0.96726 1.43866 1.42374 1.29932 1.14279 1.19145 1.04537 1.22230 0.91439 0.91705 1.25010 0.97158 1.01082 0.96602 1.70010 1.36524 1.41243 1.07454 0.86348 0.79671 0.82576 0.78060 1.21088 1.21733 1.20907 1.21443 0.87272 1.02179 0.87327 1.22837 0.98929 0.85430 0.91610 0.93921 1.86338 1.77014 1.17275 1.55948 0.88990 0.93746 0.93744 0.90154 0.90147 0.76643 0.90297 0.90235 0.88256 0.88332 0.76413 0.92871 0.91241 0.92451 0.96197 0.93587 0.88606 0.95444 0.77808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.55 10.24 -55.14 -0.56 -4.11 16 3 C 0.04 0.29 6.42 36.01 0.23 0.52 16 4 C 0.51 5.27 7.91 -10.98 -0.09 5.18 16 5 O -0.51 -8.21 16.50 -14.36 -0.24 -8.44 16 6 N -0.73 -5.44 5.56 -60.29 -0.33 -5.77 16 7 C 0.14 1.38 4.96 -4.05 -0.02 1.36 16 8 C -0.15 -1.23 5.81 -27.89 -0.16 -1.39 16 9 C 0.51 6.77 7.79 -10.98 -0.09 6.68 16 10 O -0.54 -9.56 15.64 5.56 0.09 -9.48 16 11 N -0.72 -9.54 5.05 -53.77 -0.27 -9.82 16 12 C 0.16 2.75 2.20 -67.89 -0.15 2.60 16 13 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 14 C -0.14 -2.51 5.51 -26.62 -0.15 -2.66 16 15 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 16 N -0.58 -14.14 2.94 -172.32 -0.51 -14.64 16 17 C -0.24 -6.52 9.58 -15.06 -0.14 -6.66 16 18 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 19 C 0.00 -0.02 4.91 -17.43 -0.09 -0.10 16 20 N -0.91 -25.40 11.19 55.49 0.62 -24.77 16 21 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 C 0.15 3.23 4.95 -3.71 -0.02 3.21 16 26 C 0.07 1.27 3.38 -26.61 -0.09 1.18 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 O -0.56 -9.39 12.09 -35.23 -0.43 -9.81 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.40 1.35 8.47 -40.82 -0.35 1.00 16 35 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.40 4.45 8.25 -40.82 -0.34 4.11 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.34 7.61 -51.93 -0.40 0.95 16 42 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.10 2.34 6.03 -51.93 -0.31 2.02 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.38 5.46 9.08 45.56 0.41 5.87 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -36.48 387.99 -7.31 -43.78 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.82 Total: 6.79 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 0.33 Total: 14.33 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.49 Total: -55.00 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.14 Total: -31.85 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.48 -7.31 -43.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.786 kcal (2) G-P(sol) polarization free energy of solvation -36.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds