Wall clock time and date at job start Tue Mar 31 2020 04:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00195 * 2 1 4 4 C 1.50707 * 109.47028 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99869 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99974 * 179.97438 * 4 3 2 7 7 C 1.46493 * 120.00201 * 179.72679 * 6 4 3 8 8 C 1.52999 * 109.47427 * 180.02562 * 7 6 4 9 9 C 1.50697 * 109.47222 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00045 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00039 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00094 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.45720 * 324.97049 * 12 11 9 14 14 C 1.53037 * 109.46005 * 84.92510 * 12 11 9 15 15 C 1.53188 * 109.31312 * 181.38516 * 14 12 11 16 16 N 1.46933 * 108.77876 * 305.36989 * 15 14 12 17 17 C 1.36935 * 120.63100 * 233.63063 * 16 15 14 18 18 H 1.08004 * 119.99745 * 27.66209 * 17 16 15 19 19 C 1.38806 * 120.00166 * 207.65955 * 17 16 15 20 20 N 1.31625 * 119.99836 * 17.35904 * 19 17 16 21 21 Si 1.86795 * 120.00305 * 197.36112 * 19 17 16 22 22 H 1.48497 * 109.47134 * 59.99966 * 21 19 17 23 23 H 1.48499 * 109.47285 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47395 * 299.99907 * 21 19 17 25 25 C 1.46930 * 118.73816 * 53.60098 * 16 15 14 26 26 C 1.53035 * 109.45986 * 204.99527 * 12 11 9 27 27 H 1.09001 * 109.49939 * 58.62940 * 26 12 11 28 28 O 1.42900 * 109.49719 * 298.56568 * 26 12 11 29 29 H 1.08998 * 109.47003 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46869 * 299.99739 * 1 2 3 31 31 H 1.09001 * 109.47135 * 59.99293 * 1 2 3 32 32 H 1.09001 * 109.46962 * 60.00408 * 3 2 1 33 33 H 1.08994 * 109.47151 * 299.99975 * 3 2 1 34 34 H 0.97007 * 119.99742 * 0.02562 * 6 4 3 35 35 H 1.09005 * 109.47181 * 299.99928 * 7 6 4 36 36 H 1.09002 * 109.47431 * 59.99959 * 7 6 4 37 37 H 1.09005 * 109.46570 * 299.99921 * 8 7 6 38 38 H 1.08996 * 109.47247 * 59.99829 * 8 7 6 39 39 H 0.96996 * 119.99852 * 359.97438 * 11 9 8 40 40 H 1.08995 * 109.50284 * 301.34085 * 14 12 11 41 41 H 1.09003 * 109.49573 * 61.43894 * 14 12 11 42 42 H 1.08996 * 109.59151 * 185.58065 * 15 14 12 43 43 H 1.09004 * 109.70582 * 65.22085 * 15 14 12 44 44 H 0.96992 * 119.99960 * 179.97438 * 20 19 17 45 45 H 1.08994 * 109.58343 * 186.60731 * 25 16 15 46 46 H 1.09005 * 109.58093 * 66.18498 * 25 16 15 47 47 H 0.96700 * 113.99486 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0914 -0.0015 6 7 4.2766 2.2966 -0.0013 7 6 5.7369 2.1810 0.0042 8 6 6.3593 3.5786 0.0028 9 6 7.8616 3.4596 0.0078 10 8 8.3831 2.3646 0.0124 11 7 8.6256 4.5699 0.0081 12 6 10.0860 4.4542 0.0135 13 1 10.3794 3.5878 0.6063 14 6 10.5893 4.2836 -1.4217 15 6 12.1132 4.1283 -1.4091 16 7 12.6993 5.2715 -0.6960 17 6 13.6727 6.0352 -1.2828 18 1 13.7163 6.1213 -2.3585 19 6 14.6033 6.6988 -0.4951 20 7 14.7773 6.3417 0.7598 21 14 15.6086 8.0984 -1.2159 22 1 14.6970 9.1756 -1.6784 23 1 16.5233 8.6369 -0.1773 24 1 16.4042 7.5961 -2.3646 25 6 12.2206 5.5799 0.6585 26 6 10.6954 5.7190 0.6226 27 1 10.3180 5.8528 1.6364 28 8 10.3383 6.8512 -0.1727 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8594 3.1724 -0.0009 35 1 6.0555 1.6427 0.8969 36 1 6.0617 1.6374 -0.8831 37 1 6.0408 4.1173 -0.8897 38 1 6.0346 4.1218 0.8903 39 1 8.2085 5.4456 0.0047 40 1 10.1367 3.3956 -1.8629 41 1 10.3179 5.1608 -2.0090 42 1 12.4867 4.1058 -2.4329 43 1 12.3841 3.2028 -0.9009 44 1 15.4278 6.8052 1.3101 45 1 12.6650 6.5152 0.9988 46 1 12.4982 4.7729 1.3366 47 1 10.6910 7.6895 0.1558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099863083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:22 Heat of formation + Delta-G solvation = -175.462643 kcal Electronic energy + Delta-G solvation = -28139.810940 eV Core-core repulsion = 23936.207185 eV Total energy + Delta-G solvation = -4203.603755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.23276 -40.73519 -39.48881 -38.42521 -36.48701 -36.28477 -35.66686 -33.93303 -32.50040 -31.09385 -30.68094 -29.51775 -27.21980 -26.66644 -24.82444 -23.91458 -23.27300 -21.90624 -21.29201 -20.85535 -19.15076 -18.48354 -18.09088 -17.59217 -17.42527 -17.38537 -17.05946 -16.80264 -16.63725 -16.27543 -15.69092 -15.64189 -15.47926 -15.30303 -15.16062 -14.86954 -14.50190 -14.27501 -14.03125 -13.76980 -13.63846 -13.17359 -13.11843 -12.93190 -12.74668 -12.61514 -12.46336 -12.38164 -12.33579 -12.23005 -12.02132 -11.83270 -11.44516 -11.07148 -10.84742 -10.74427 -10.70066 -10.57251 -10.20537 -9.98220 -8.67595 -7.87163 -5.31147 1.50172 1.50804 1.54450 1.58548 1.65814 1.69329 2.33075 2.52618 3.16381 3.25841 3.41283 3.59539 3.66298 3.81870 3.87706 4.01478 4.05155 4.09321 4.23161 4.31727 4.36001 4.41659 4.52065 4.53238 4.60324 4.60623 4.76977 4.85193 4.89819 4.90760 4.93974 4.97526 5.07284 5.18946 5.32261 5.43768 5.53648 5.56823 5.65457 6.06704 6.37281 6.54117 6.64140 6.93210 7.15284 7.22842 7.31989 7.83104 8.36158 9.19073 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.046152 B = 0.001801 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.542065 B =15539.465456 C =15707.830719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.047 3.953 4 C 0.502 3.498 5 O -0.583 6.583 6 N -0.707 5.707 7 C 0.140 3.860 8 C -0.133 4.133 9 C 0.507 3.493 10 O -0.591 6.591 11 N -0.704 5.704 12 C 0.167 3.833 13 H 0.069 0.931 14 C -0.119 4.119 15 C 0.143 3.857 16 N -0.597 5.597 17 C -0.257 4.257 18 H 0.061 0.939 19 C -0.046 4.046 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.274 1.274 23 H -0.295 1.295 24 H -0.282 1.282 25 C 0.148 3.852 26 C 0.093 3.907 27 H 0.071 0.929 28 O -0.559 6.559 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.425 0.575 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.418 0.582 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.008 0.992 44 H 0.251 0.749 45 H 0.073 0.927 46 H 0.001 0.999 47 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.036 1.509 0.626 30.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.032 4.032 4 C 0.289 3.711 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.015 3.985 8 C -0.172 4.172 9 C 0.295 3.705 10 O -0.471 6.471 11 N -0.356 5.356 12 C 0.062 3.938 13 H 0.087 0.913 14 C -0.159 4.159 15 C 0.016 3.984 16 N -0.320 5.320 17 C -0.387 4.387 18 H 0.079 0.921 19 C -0.241 4.241 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.200 1.200 23 H -0.221 1.221 24 H -0.209 1.209 25 C 0.021 3.979 26 C 0.032 3.968 27 H 0.089 0.911 28 O -0.366 6.366 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.264 0.736 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.255 0.745 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.025 0.975 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.019 0.981 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -29.385 -0.590 0.381 29.393 hybrid contribution 1.181 1.536 0.170 1.945 sum -28.204 0.945 0.551 28.225 Atomic orbital electron populations 1.23028 0.78177 1.04047 1.01809 1.87975 1.22258 1.27181 1.95843 1.22409 0.88243 0.86697 1.05827 1.21139 0.90601 0.83973 0.75388 1.90754 1.76012 1.29120 1.50299 1.45597 1.06001 1.09511 1.75188 1.20789 0.79205 0.96803 1.01711 1.21734 0.88991 0.97905 1.08603 1.21157 0.90790 0.83634 0.74918 1.90752 1.76295 1.28474 1.51600 1.45943 1.05833 1.09699 1.74097 1.20650 0.79997 0.96394 0.96767 0.91298 1.22052 0.96219 1.00949 0.96648 1.20978 0.92176 0.89129 0.96078 1.44084 1.42467 1.30536 1.14913 1.19400 1.05217 1.22520 0.91541 0.92092 1.25697 0.98314 1.03149 0.96967 1.70164 1.37217 1.42227 1.08577 0.85337 0.78164 0.79840 0.77020 1.20023 1.22100 1.20860 1.21351 0.90751 0.99920 0.85857 1.22465 0.95122 0.85992 0.93245 0.91124 1.86308 1.76666 1.17567 1.56083 0.89180 0.91988 0.92023 0.86691 0.86754 0.73650 0.93157 0.93297 0.84636 0.84338 0.74463 0.92606 0.91408 0.92739 0.97453 0.94011 0.90831 0.98091 0.76464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -7.55 10.24 -129.94 -1.33 -8.88 16 3 C 0.05 0.50 6.42 71.24 0.46 0.96 16 4 C 0.50 9.85 7.91 87.66 0.69 10.54 16 5 O -0.58 -19.44 16.50 15.99 0.26 -19.18 16 6 N -0.71 -8.80 5.56 -463.06 -2.57 -11.38 16 7 C 0.14 2.69 4.96 86.38 0.43 3.12 16 8 C -0.13 -1.64 5.81 29.85 0.17 -1.47 16 9 C 0.51 12.49 7.79 87.66 0.68 13.17 16 10 O -0.59 -21.14 15.64 -3.04 -0.05 -21.19 16 11 N -0.70 -16.95 5.05 -442.41 -2.23 -19.19 16 12 C 0.17 5.55 2.20 45.02 0.10 5.65 16 13 H 0.07 2.63 7.58 -2.39 -0.02 2.61 16 14 C -0.12 -4.34 5.51 30.67 0.17 -4.17 16 15 C 0.14 6.26 6.52 86.36 0.56 6.83 16 16 N -0.60 -29.47 2.94 -699.09 -2.05 -31.52 16 17 C -0.26 -13.86 9.58 84.03 0.81 -13.05 16 18 H 0.06 3.27 7.89 -2.91 -0.02 3.25 16 19 C -0.05 -2.49 4.91 84.86 0.42 -2.07 16 20 N -0.94 -53.35 11.19 21.65 0.24 -53.11 16 21 Si 0.97 43.55 29.59 68.60 2.03 45.58 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 C 0.15 6.69 4.95 86.36 0.43 7.12 16 26 C 0.09 3.11 3.38 30.67 0.10 3.21 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 28 O -0.56 -17.36 12.09 -148.98 -1.80 -19.16 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.42 0.94 8.47 -92.70 -0.79 0.15 16 35 H 0.05 1.27 8.10 -2.38 -0.02 1.25 16 36 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 37 H 0.14 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.42 7.51 8.25 -92.71 -0.77 6.75 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.07 2.52 7.61 -2.39 -0.02 2.50 16 42 H 0.05 2.36 7.93 -2.39 -0.02 2.34 16 43 H 0.01 0.34 8.14 -2.38 -0.02 0.33 16 44 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 45 H 0.07 3.65 6.03 -2.39 -0.01 3.64 16 46 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 47 H 0.39 10.31 9.08 -74.06 -0.67 9.64 16 Total: -1.00 -85.49 387.99 -2.45 -87.94 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -1.22 Total: 18.79 kcal Atomic # 6 Polarization: 25.03 SS G_CDS: 6.27 Total: 31.29 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -6.62 Total: -115.20 kcal Atomic # 8 Polarization: -65.49 SS G_CDS: -2.91 Total: -68.41 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -85.49 -2.45 -87.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.522 kcal (2) G-P(sol) polarization free energy of solvation -85.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds