Wall clock time and date at job start Tue Mar 31 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00345 * 2 1 4 4 C 1.50696 * 109.47397 * 179.97438 * 3 2 1 5 5 O 1.21273 * 120.00002 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99792 * 179.97438 * 4 3 2 7 7 C 1.46503 * 120.00131 * 0.02562 * 6 4 3 8 8 C 1.46505 * 119.99714 * 179.97438 * 6 4 3 9 9 C 1.50699 * 109.47303 * 270.00329 * 8 6 4 10 10 O 1.21280 * 120.00125 * 0.02562 * 9 8 6 11 11 N 1.34775 * 119.99948 * 180.02562 * 9 8 6 12 12 C 1.46503 * 119.99813 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46039 * 34.97735 * 12 11 9 14 14 C 1.53037 * 109.46075 * 274.99714 * 12 11 9 15 15 C 1.53192 * 109.31110 * 178.61565 * 14 12 11 16 16 N 1.46918 * 108.77632 * 54.63797 * 15 14 12 17 17 C 1.36941 * 120.63027 * 126.36610 * 16 15 14 18 18 H 1.08005 * 119.99986 * 209.60433 * 17 16 15 19 19 C 1.38813 * 119.99988 * 29.60310 * 17 16 15 20 20 N 1.31620 * 120.00175 * 198.89704 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 18.90480 * 19 17 16 22 22 H 1.48506 * 109.46784 * 273.06094 * 21 19 17 23 23 H 1.48498 * 109.47587 * 33.05795 * 21 19 17 24 24 H 1.48499 * 109.47184 * 153.06380 * 21 19 17 25 25 C 1.46927 * 118.73922 * 306.64435 * 16 15 14 26 26 C 1.52759 * 109.00742 * 53.30794 * 25 16 15 27 27 H 1.08994 * 109.36166 * 65.50156 * 26 25 16 28 28 O 1.42906 * 109.58672 * 185.53686 * 26 25 16 29 29 H 1.09008 * 109.46879 * 300.00020 * 1 2 3 30 30 H 1.08999 * 109.47289 * 59.99493 * 1 2 3 31 31 H 1.09000 * 109.46915 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46833 * 59.99714 * 3 2 1 33 33 H 1.09005 * 109.46718 * 300.00381 * 3 2 1 34 34 H 1.09002 * 109.46507 * 269.98849 * 7 6 4 35 35 H 1.08998 * 109.47141 * 29.99490 * 7 6 4 36 36 H 1.09001 * 109.47337 * 149.99804 * 7 6 4 37 37 H 1.08997 * 109.46806 * 150.00667 * 8 6 4 38 38 H 1.08991 * 109.46986 * 30.01097 * 8 6 4 39 39 H 0.97000 * 120.00011 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.49296 * 58.66779 * 14 12 11 41 41 H 1.08993 * 109.52557 * 298.58581 * 14 12 11 42 42 H 1.08999 * 109.58628 * 294.85030 * 15 14 12 43 43 H 1.09003 * 109.70159 * 174.49543 * 15 14 12 44 44 H 0.96998 * 119.99750 * 179.97438 * 20 19 17 45 45 H 1.09008 * 109.58579 * 173.14259 * 25 16 15 46 46 H 1.08998 * 109.58446 * 293.56575 * 25 16 15 47 47 H 0.96697 * 113.99997 * 299.97602 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 8 4.0341 0.0916 0.0006 6 7 4.2765 2.2968 0.0002 7 6 3.6464 3.6194 -0.0003 8 6 5.7369 2.1811 0.0014 9 6 6.2367 2.1426 1.4226 10 8 5.4504 2.2051 2.3438 11 7 7.5575 2.0387 1.6699 12 6 8.0432 2.0007 3.0515 13 1 7.3257 1.4663 3.6741 14 6 8.2069 3.4298 3.5739 15 6 8.6818 3.3857 5.0297 16 7 9.9031 2.5724 5.1044 17 6 11.0401 3.0724 5.6810 18 1 12.0094 2.7359 5.3439 19 6 10.9468 4.0117 6.6988 20 7 11.9857 4.7619 6.9993 21 14 9.3469 4.2108 7.6422 22 1 8.4662 5.1688 6.9266 23 1 8.6661 2.8951 7.7457 24 1 9.6362 4.7269 9.0042 25 6 9.8831 1.2148 4.5430 26 6 9.3932 1.2811 3.0977 27 1 10.1180 1.8285 2.4952 28 8 9.2459 -0.0429 2.5804 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.4904 3.9471 -1.0281 35 1 2.6867 3.5649 0.5135 36 1 4.2936 4.3304 0.5133 37 1 6.1698 3.0392 -0.5128 38 1 6.0292 1.2649 -0.5115 39 1 8.1864 1.9890 0.9331 40 1 7.2501 3.9490 3.5189 41 1 8.9426 3.9574 2.9670 42 1 7.9071 2.9397 5.6534 43 1 8.8941 4.3966 5.3777 44 1 11.9203 5.4185 7.7103 45 1 10.8886 0.7944 4.5677 46 1 9.2084 0.5881 5.1263 47 1 10.0643 -0.5580 2.5795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099864914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:00 Heat of formation + Delta-G solvation = -121.645363 kcal Electronic energy + Delta-G solvation = -29263.774125 eV Core-core repulsion = 25062.504062 eV Total energy + Delta-G solvation = -4201.270062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.54845 -39.54064 -38.21518 -37.58760 -35.66070 -35.62397 -34.38613 -32.15830 -30.86231 -29.95317 -29.20635 -28.17812 -26.78069 -25.82213 -24.73276 -22.76235 -22.11230 -20.65280 -20.04219 -19.44558 -17.72592 -17.54805 -17.09718 -17.02696 -16.67208 -16.45492 -16.25733 -15.64505 -15.17668 -14.99570 -14.75566 -14.54159 -14.39662 -14.00279 -13.62121 -13.32297 -13.29030 -13.22063 -12.88575 -12.76075 -12.54425 -12.53531 -12.36944 -12.11264 -11.93276 -11.77548 -11.56567 -11.19516 -11.01179 -10.28849 -10.17953 -10.15783 -10.10615 -10.01160 -9.87256 -9.79764 -9.56919 -8.92994 -8.81352 -8.65444 -7.06419 -6.02229 -3.42529 2.22338 2.43599 2.71870 3.28527 3.31021 3.45946 3.50283 3.59336 4.25009 4.29560 4.47412 4.61522 4.69931 4.76758 4.83615 4.85074 4.90529 4.94069 4.99400 5.08037 5.14242 5.20980 5.30102 5.32883 5.34361 5.40208 5.57538 5.74428 5.79595 5.95971 6.02206 6.22389 6.27986 6.39119 6.52214 6.56934 6.59009 6.69382 6.77976 6.99805 7.61020 7.79223 7.91408 7.92379 8.24783 8.33508 8.83847 9.62841 9.99095 11.13253 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.002684 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.897623 B =10431.148908 C =10909.153916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.520 3.480 5 O -0.513 6.513 6 N -0.600 5.600 7 C 0.079 3.921 8 C 0.098 3.902 9 C 0.496 3.504 10 O -0.535 6.535 11 N -0.714 5.714 12 C 0.163 3.837 13 H 0.088 0.912 14 C -0.138 4.138 15 C 0.124 3.876 16 N -0.602 5.602 17 C -0.265 4.265 18 H 0.086 0.914 19 C 0.027 3.973 20 N -0.906 5.906 21 Si 0.884 3.116 22 H -0.285 1.285 23 H -0.271 1.271 24 H -0.302 1.302 25 C 0.123 3.877 26 C 0.080 3.920 27 H 0.061 0.939 28 O -0.568 6.568 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.398 0.602 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.029 0.971 43 H 0.081 0.919 44 H 0.264 0.736 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.834 -2.432 -18.796 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.307 3.693 5 O -0.386 6.386 6 N -0.335 5.335 7 C -0.064 4.064 8 C -0.028 4.028 9 C 0.280 3.720 10 O -0.411 6.411 11 N -0.365 5.365 12 C 0.058 3.942 13 H 0.106 0.894 14 C -0.179 4.179 15 C -0.002 4.002 16 N -0.327 5.327 17 C -0.394 4.394 18 H 0.104 0.896 19 C -0.172 4.172 20 N -0.549 5.549 21 Si 0.715 3.285 22 H -0.212 1.212 23 H -0.196 1.196 24 H -0.230 1.230 25 C -0.004 4.004 26 C 0.019 3.981 27 H 0.079 0.921 28 O -0.372 6.372 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.232 0.768 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -18.566 -2.856 -18.078 26.070 hybrid contribution -0.124 0.454 0.442 0.646 sum -18.690 -2.402 -17.636 25.809 Atomic orbital electron populations 1.22845 0.80292 1.03402 1.00107 1.88026 1.19845 1.25212 1.95405 1.22244 0.91430 0.86996 1.02535 1.20222 0.88803 0.84055 0.76227 1.90745 1.74385 1.26144 1.47338 1.47279 1.05241 1.06650 1.74366 1.21868 0.99181 0.83614 1.01704 1.21315 0.80861 1.05692 0.94955 1.21040 0.82677 0.76458 0.91810 1.90697 1.55174 1.49198 1.46047 1.45993 1.06977 1.74299 1.09191 1.20934 0.94692 0.96330 0.82206 0.89436 1.22397 1.01149 0.94975 0.99329 1.21439 0.88676 0.96958 0.93121 1.44309 1.10215 1.09793 1.68412 1.18875 0.85241 1.21913 1.13323 0.89632 1.25315 0.96704 0.97900 0.97311 1.69808 1.30472 1.22439 1.32151 0.86985 0.84140 0.78275 0.79137 1.21238 1.19623 1.22992 1.21491 1.00006 0.87951 0.90994 1.22621 0.95809 0.82767 0.96901 0.92132 1.86509 1.38176 1.26370 1.86186 0.93718 0.93828 0.89017 0.89947 0.90217 0.92052 0.90893 0.90424 0.87279 0.86766 0.76815 0.91634 0.91300 0.95357 0.90107 0.92606 0.91149 0.94859 0.77727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.37 -4.33 10.24 -55.14 -0.56 -4.90 16 3 C 0.05 0.45 4.97 36.00 0.18 0.63 16 4 C 0.52 6.81 7.75 -10.99 -0.09 6.72 16 5 O -0.51 -9.12 16.08 -14.35 -0.23 -9.35 16 6 N -0.60 -6.32 2.36 -182.96 -0.43 -6.75 16 7 C 0.08 0.51 10.24 59.85 0.61 1.12 16 8 C 0.10 1.02 5.89 -5.19 -0.03 0.99 16 9 C 0.50 7.24 7.86 -10.99 -0.09 7.16 16 10 O -0.53 -10.04 16.09 5.56 0.09 -9.95 16 11 N -0.71 -9.91 4.92 -53.77 -0.26 -10.18 16 12 C 0.16 2.77 2.12 -67.89 -0.14 2.63 16 13 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 14 C -0.14 -2.50 5.65 -26.61 -0.15 -2.65 16 15 C 0.12 2.72 4.21 -3.71 -0.02 2.70 16 16 N -0.60 -13.99 2.75 -172.58 -0.47 -14.46 16 17 C -0.27 -7.22 10.03 -15.06 -0.15 -7.37 16 18 H 0.09 2.46 8.06 -52.48 -0.42 2.04 16 19 C 0.03 0.78 5.25 -17.43 -0.09 0.68 16 20 N -0.91 -27.25 13.97 55.49 0.78 -26.48 16 21 Si 0.88 22.38 24.35 -169.99 -4.14 18.24 16 22 H -0.28 -6.90 6.40 56.52 0.36 -6.54 16 23 H -0.27 -6.88 6.93 56.52 0.39 -6.49 16 24 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 25 C 0.12 2.36 6.11 -3.93 -0.02 2.34 16 26 C 0.08 1.29 3.13 -26.83 -0.08 1.21 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 O -0.57 -8.30 13.16 -35.23 -0.46 -8.77 16 29 H 0.04 0.26 8.14 -51.92 -0.42 -0.17 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.65 7.40 -51.93 -0.38 0.26 16 33 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.39 6.44 -51.93 -0.33 0.06 16 36 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 37 H 0.11 0.70 8.07 -51.93 -0.42 0.28 16 38 H 0.11 1.21 7.42 -51.93 -0.39 0.83 16 39 H 0.40 4.35 8.60 -40.82 -0.35 4.00 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.03 0.64 7.21 -51.93 -0.37 0.26 16 43 H 0.08 1.91 4.51 -51.93 -0.23 1.68 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.07 1.29 7.93 -51.92 -0.41 0.88 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.38 3.91 9.08 45.56 0.41 4.32 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -38.92 380.50 -5.63 -44.56 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.70 Total: 4.81 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 1.04 Total: 17.49 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.40 Total: -57.87 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.17 Total: -32.96 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.92 -5.63 -44.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099864914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.088 kcal (2) G-P(sol) polarization free energy of solvation -38.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds