Wall clock time and date at job start Tue Mar 31 2020 04:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00345 * 2 1 4 4 C 1.50696 * 109.47397 * 179.97438 * 3 2 1 5 5 O 1.21273 * 120.00002 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99792 * 179.97438 * 4 3 2 7 7 C 1.46503 * 120.00131 * 0.02562 * 6 4 3 8 8 C 1.46505 * 119.99714 * 179.97438 * 6 4 3 9 9 C 1.50699 * 109.47303 * 270.00329 * 8 6 4 10 10 O 1.21280 * 120.00125 * 0.02562 * 9 8 6 11 11 N 1.34775 * 119.99948 * 180.02562 * 9 8 6 12 12 C 1.46503 * 119.99813 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46039 * 34.97735 * 12 11 9 14 14 C 1.53037 * 109.46075 * 274.99714 * 12 11 9 15 15 C 1.53192 * 109.31110 * 178.61565 * 14 12 11 16 16 N 1.46918 * 108.77632 * 54.63797 * 15 14 12 17 17 C 1.36941 * 120.63027 * 126.36610 * 16 15 14 18 18 H 1.08005 * 119.99986 * 209.60433 * 17 16 15 19 19 C 1.38813 * 119.99988 * 29.60310 * 17 16 15 20 20 N 1.31620 * 120.00175 * 198.89704 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 18.90480 * 19 17 16 22 22 H 1.48506 * 109.46784 * 273.06094 * 21 19 17 23 23 H 1.48498 * 109.47587 * 33.05795 * 21 19 17 24 24 H 1.48499 * 109.47184 * 153.06380 * 21 19 17 25 25 C 1.46927 * 118.73922 * 306.64435 * 16 15 14 26 26 C 1.52759 * 109.00742 * 53.30794 * 25 16 15 27 27 H 1.08994 * 109.36166 * 65.50156 * 26 25 16 28 28 O 1.42906 * 109.58672 * 185.53686 * 26 25 16 29 29 H 1.09008 * 109.46879 * 300.00020 * 1 2 3 30 30 H 1.08999 * 109.47289 * 59.99493 * 1 2 3 31 31 H 1.09000 * 109.46915 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46833 * 59.99714 * 3 2 1 33 33 H 1.09005 * 109.46718 * 300.00381 * 3 2 1 34 34 H 1.09002 * 109.46507 * 269.98849 * 7 6 4 35 35 H 1.08998 * 109.47141 * 29.99490 * 7 6 4 36 36 H 1.09001 * 109.47337 * 149.99804 * 7 6 4 37 37 H 1.08997 * 109.46806 * 150.00667 * 8 6 4 38 38 H 1.08991 * 109.46986 * 30.01097 * 8 6 4 39 39 H 0.97000 * 120.00011 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.49296 * 58.66779 * 14 12 11 41 41 H 1.08993 * 109.52557 * 298.58581 * 14 12 11 42 42 H 1.08999 * 109.58628 * 294.85030 * 15 14 12 43 43 H 1.09003 * 109.70159 * 174.49543 * 15 14 12 44 44 H 0.96998 * 119.99750 * 179.97438 * 20 19 17 45 45 H 1.09008 * 109.58579 * 173.14259 * 25 16 15 46 46 H 1.08998 * 109.58446 * 293.56575 * 25 16 15 47 47 H 0.96697 * 113.99997 * 299.97602 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 8 4.0341 0.0916 0.0006 6 7 4.2765 2.2968 0.0002 7 6 3.6464 3.6194 -0.0003 8 6 5.7369 2.1811 0.0014 9 6 6.2367 2.1426 1.4226 10 8 5.4504 2.2051 2.3438 11 7 7.5575 2.0387 1.6699 12 6 8.0432 2.0007 3.0515 13 1 7.3257 1.4663 3.6741 14 6 8.2069 3.4298 3.5739 15 6 8.6818 3.3857 5.0297 16 7 9.9031 2.5724 5.1044 17 6 11.0401 3.0724 5.6810 18 1 12.0094 2.7359 5.3439 19 6 10.9468 4.0117 6.6988 20 7 11.9857 4.7619 6.9993 21 14 9.3469 4.2108 7.6422 22 1 8.4662 5.1688 6.9266 23 1 8.6661 2.8951 7.7457 24 1 9.6362 4.7269 9.0042 25 6 9.8831 1.2148 4.5430 26 6 9.3932 1.2811 3.0977 27 1 10.1180 1.8285 2.4952 28 8 9.2459 -0.0429 2.5804 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.4904 3.9471 -1.0281 35 1 2.6867 3.5649 0.5135 36 1 4.2936 4.3304 0.5133 37 1 6.1698 3.0392 -0.5128 38 1 6.0292 1.2649 -0.5115 39 1 8.1864 1.9890 0.9331 40 1 7.2501 3.9490 3.5189 41 1 8.9426 3.9574 2.9670 42 1 7.9071 2.9397 5.6534 43 1 8.8941 4.3966 5.3777 44 1 11.9203 5.4185 7.7103 45 1 10.8886 0.7944 4.5677 46 1 9.2084 0.5881 5.1263 47 1 10.0643 -0.5580 2.5795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099864914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:57 Heat of formation + Delta-G solvation = -155.209581 kcal Electronic energy + Delta-G solvation = -29265.229578 eV Core-core repulsion = 25062.504062 eV Total energy + Delta-G solvation = -4202.725516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.55699 -40.70693 -39.49388 -38.41264 -37.14764 -36.56319 -35.74927 -34.05757 -32.27691 -31.12821 -30.58258 -28.94125 -27.46939 -26.95353 -26.01246 -24.30780 -23.77232 -21.80302 -21.49091 -20.43781 -19.05965 -18.52438 -18.35350 -18.10932 -17.87818 -17.57970 -17.22880 -16.86932 -16.42688 -16.20552 -16.07717 -15.82538 -15.46565 -15.30406 -14.98639 -14.70820 -14.56807 -14.05980 -14.01419 -13.95868 -13.82664 -13.75843 -13.37416 -13.20944 -13.16550 -13.01882 -12.85969 -12.68305 -12.35395 -12.19137 -11.92085 -11.67039 -11.50896 -11.20066 -11.17637 -10.94758 -10.79045 -10.70611 -10.08992 -9.78817 -9.01177 -8.21142 -5.57138 1.25685 1.34405 1.38438 1.46359 1.60371 1.66606 2.25066 2.36544 2.90539 2.96013 3.09776 3.32474 3.54005 3.71007 3.84067 3.97923 4.05627 4.07901 4.17256 4.20088 4.22309 4.28864 4.29304 4.36513 4.48264 4.54096 4.55301 4.67379 4.73215 4.78829 4.83091 4.84739 4.87797 4.92180 4.99759 5.21563 5.26983 5.43836 5.81255 5.97162 6.08710 6.26031 6.53704 6.77059 6.89698 7.03687 7.24501 7.53331 7.94362 8.97955 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.002684 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.897623 B =10431.148908 C =10909.153916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.049 3.951 4 C 0.506 3.494 5 O -0.575 6.575 6 N -0.598 5.598 7 C 0.071 3.929 8 C 0.101 3.899 9 C 0.491 3.509 10 O -0.581 6.581 11 N -0.703 5.703 12 C 0.168 3.832 13 H 0.055 0.945 14 C -0.123 4.123 15 C 0.120 3.880 16 N -0.613 5.613 17 C -0.249 4.249 18 H 0.064 0.936 19 C -0.025 4.025 20 N -0.949 5.949 21 Si 0.937 3.063 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.308 1.308 25 C 0.118 3.882 26 C 0.099 3.901 27 H 0.076 0.924 28 O -0.571 6.571 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.158 0.842 38 H 0.112 0.888 39 H 0.416 0.584 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.021 0.979 43 H 0.063 0.937 44 H 0.263 0.737 45 H 0.078 0.922 46 H 0.026 0.974 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.584 -1.730 -21.269 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.030 4.030 4 C 0.295 3.705 5 O -0.454 6.454 6 N -0.331 5.331 7 C -0.070 4.070 8 C -0.025 4.025 9 C 0.277 3.723 10 O -0.461 6.461 11 N -0.354 5.354 12 C 0.062 3.938 13 H 0.073 0.927 14 C -0.163 4.163 15 C -0.006 4.006 16 N -0.339 5.339 17 C -0.378 4.378 18 H 0.082 0.918 19 C -0.220 4.220 20 N -0.595 5.595 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.236 1.236 25 C -0.008 4.008 26 C 0.038 3.962 27 H 0.094 0.906 28 O -0.378 6.378 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.175 0.825 38 H 0.130 0.870 39 H 0.253 0.747 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.039 0.961 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.044 0.956 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -20.331 -2.141 -20.614 29.032 hybrid contribution 0.430 0.162 1.164 1.251 sum -19.902 -1.979 -19.450 27.898 Atomic orbital electron populations 1.23044 0.78138 1.04194 1.01727 1.87968 1.22335 1.26895 1.95781 1.22402 0.88873 0.86693 1.05005 1.21036 0.90574 0.83742 0.75124 1.90703 1.75683 1.28473 1.50502 1.47499 1.05300 1.07626 1.72719 1.22188 0.99353 0.81369 1.04129 1.21460 0.81269 1.07717 0.92057 1.21869 0.82236 0.74993 0.93191 1.90677 1.56255 1.51276 1.47867 1.45804 1.07451 1.73831 1.08332 1.20612 0.94363 0.95241 0.83558 0.92700 1.22186 1.01432 0.95984 0.96691 1.21411 0.87913 0.95594 0.95646 1.44391 1.09451 1.11568 1.68494 1.18856 0.85824 1.20656 1.12483 0.91846 1.25840 0.99187 0.98477 0.98525 1.69909 1.32436 1.23872 1.33268 0.86121 0.81329 0.78223 0.77709 1.19550 1.20035 1.23612 1.21666 1.00587 0.85768 0.92760 1.22231 0.95335 0.83816 0.94806 0.90627 1.86488 1.39973 1.25770 1.85596 0.92668 0.91522 0.88821 0.88446 0.86265 0.88564 0.89814 0.90535 0.82492 0.86988 0.74741 0.91105 0.90244 0.96127 0.91899 0.92760 0.90362 0.95560 0.75311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -9.35 10.24 -129.94 -1.33 -10.68 16 3 C 0.05 0.83 4.97 71.23 0.35 1.18 16 4 C 0.51 12.71 7.75 87.66 0.68 13.39 16 5 O -0.57 -20.75 16.08 16.03 0.26 -20.49 16 6 N -0.60 -11.19 2.36 -851.14 -2.01 -13.20 16 7 C 0.07 0.66 10.24 127.77 1.31 1.97 16 8 C 0.10 1.84 5.89 85.63 0.50 2.35 16 9 C 0.49 13.53 7.86 87.66 0.69 14.22 16 10 O -0.58 -21.50 16.09 -3.03 -0.05 -21.55 16 11 N -0.70 -18.00 4.92 -442.41 -2.18 -20.18 16 12 C 0.17 5.49 2.12 45.02 0.10 5.58 16 13 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 14 C -0.12 -4.25 5.65 30.67 0.17 -4.08 16 15 C 0.12 5.19 4.21 86.36 0.36 5.55 16 16 N -0.61 -28.23 2.75 -699.93 -1.92 -30.15 16 17 C -0.25 -13.62 10.03 84.03 0.84 -12.77 16 18 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 19 C -0.02 -1.41 5.25 84.86 0.45 -0.96 16 20 N -0.95 -58.16 13.97 21.65 0.30 -57.85 16 21 Si 0.94 46.78 24.35 68.60 1.67 48.45 16 22 H -0.27 -12.60 6.40 99.48 0.64 -11.97 16 23 H -0.28 -13.74 6.93 99.48 0.69 -13.05 16 24 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 25 C 0.12 4.44 6.11 86.22 0.53 4.97 16 26 C 0.10 3.01 3.13 30.53 0.10 3.11 16 27 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 28 O -0.57 -15.35 13.16 -148.98 -1.96 -17.31 16 29 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.30 7.40 -2.39 -0.02 1.28 16 33 H 0.12 0.99 8.11 -2.38 -0.02 0.97 16 34 H 0.10 0.27 8.14 -2.39 -0.02 0.26 16 35 H 0.08 0.61 6.44 -2.39 -0.02 0.60 16 36 H 0.08 0.77 8.07 -2.39 -0.02 0.75 16 37 H 0.16 1.31 8.07 -2.39 -0.02 1.29 16 38 H 0.11 2.17 7.42 -2.39 -0.02 2.15 16 39 H 0.42 7.79 8.60 -92.71 -0.80 6.99 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.02 0.93 7.21 -2.39 -0.02 0.91 16 43 H 0.06 2.94 4.51 -2.39 -0.01 2.93 16 44 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 45 H 0.08 2.78 7.93 -2.38 -0.02 2.76 16 46 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.40 7.13 9.08 -74.06 -0.67 6.46 16 Total: -1.00 -88.40 380.50 -0.45 -88.85 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.56 Total: 18.06 kcal Atomic # 6 Polarization: 28.72 SS G_CDS: 7.33 Total: 36.05 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -5.81 Total: -121.38 kcal Atomic # 8 Polarization: -66.95 SS G_CDS: -3.08 Total: -70.03 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.67 Total: 48.45 kcal Total: -88.40 -0.45 -88.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099864914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.355 kcal (2) G-P(sol) polarization free energy of solvation -88.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds