Wall clock time and date at job start Tue Mar 31 2020 04:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 114.00129 * 2 1 4 4 C 1.50693 * 109.47066 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00297 * 0.02562 * 4 3 2 6 6 N 1.34784 * 119.99964 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00016 * 0.02562 * 6 4 3 8 8 C 1.46494 * 119.99841 * 180.02562 * 6 4 3 9 9 C 1.50706 * 109.47023 * 269.99739 * 8 6 4 10 10 O 1.21280 * 120.00109 * 0.02562 * 9 8 6 11 11 N 1.34776 * 119.99495 * 180.02562 * 9 8 6 12 12 C 1.46503 * 119.99454 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.45213 * 35.03373 * 12 11 9 14 14 C 1.53040 * 109.46105 * 275.06822 * 12 11 9 15 15 C 1.53194 * 109.31619 * 178.61886 * 14 12 11 16 16 N 1.47200 * 108.85704 * 54.64696 * 15 14 12 17 17 C 1.36935 * 120.81239 * 126.33781 * 16 15 14 18 18 H 1.08004 * 119.99817 * 207.53790 * 17 16 15 19 19 C 1.38804 * 120.00238 * 27.53989 * 17 16 15 20 20 N 1.31624 * 120.00025 * 17.25587 * 19 17 16 21 21 Si 1.86801 * 120.00311 * 197.25673 * 19 17 16 22 22 H 1.48497 * 109.47244 * 60.00150 * 21 19 17 23 23 H 1.48504 * 109.46988 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47113 * 300.00082 * 21 19 17 25 25 C 1.46928 * 118.55549 * 306.48491 * 16 15 14 26 26 C 1.53045 * 109.45947 * 155.00189 * 12 11 9 27 27 H 1.08995 * 109.49427 * 301.33515 * 26 12 11 28 28 O 1.42895 * 109.52405 * 61.41889 * 26 12 11 29 29 H 1.09001 * 109.47028 * 300.00050 * 1 2 3 30 30 H 1.09000 * 109.46810 * 60.00001 * 1 2 3 31 31 H 1.09000 * 109.46837 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46932 * 60.00144 * 3 2 1 33 33 H 1.09000 * 109.47150 * 300.00438 * 3 2 1 34 34 H 1.08997 * 109.47257 * 270.00129 * 7 6 4 35 35 H 1.09001 * 109.46845 * 29.99823 * 7 6 4 36 36 H 1.08997 * 109.46913 * 149.99836 * 7 6 4 37 37 H 1.09004 * 109.47192 * 150.00406 * 8 6 4 38 38 H 1.09000 * 109.47405 * 30.00139 * 8 6 4 39 39 H 0.96994 * 120.00576 * 0.02562 * 11 9 8 40 40 H 1.09007 * 109.49422 * 298.56663 * 14 12 11 41 41 H 1.08995 * 109.49988 * 58.66145 * 14 12 11 42 42 H 1.09001 * 109.58692 * 174.42315 * 15 14 12 43 43 H 1.09005 * 109.58011 * 294.84744 * 15 14 12 44 44 H 0.96996 * 120.00327 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.58424 * 293.67784 * 25 16 15 46 46 H 1.09002 * 109.58777 * 173.39544 * 25 16 15 47 47 H 0.96699 * 114.00376 * 179.86006 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2968 0.0013 7 6 3.6466 3.6194 0.0019 8 6 5.7369 2.1810 0.0013 9 6 6.2376 2.1406 1.4222 10 8 5.4518 2.2020 2.3440 11 7 7.5585 2.0364 1.6684 12 6 8.0452 1.9966 3.0497 13 1 7.3284 1.4605 3.6718 14 6 8.2076 3.4250 3.5745 15 6 8.6835 3.3791 5.0299 16 7 9.9083 2.5661 5.1046 17 6 11.0464 3.0637 5.6809 18 1 12.0140 2.7020 5.3655 19 6 10.9567 4.0331 6.6703 20 7 9.8151 4.2329 7.2943 21 14 12.4560 5.0542 7.1164 22 1 12.9179 5.8038 5.9207 23 1 12.1000 6.0115 8.1944 24 1 13.5420 4.1585 7.5891 25 6 9.8852 1.2082 4.5439 26 6 9.3960 1.2784 3.0939 27 1 9.2843 0.2690 2.6983 28 8 10.3453 1.9978 2.3046 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.4904 3.9479 -1.0256 35 1 2.6868 3.5643 0.5156 36 1 4.2938 4.3298 0.5162 37 1 6.1695 3.0398 -0.5120 38 1 6.0289 1.2654 -0.5130 39 1 8.1870 1.9876 0.9312 40 1 8.9427 3.9540 2.9679 41 1 7.2503 3.9433 3.5208 42 1 8.8955 4.3904 5.3770 43 1 7.9096 2.9312 5.6533 44 1 9.7524 4.9100 7.9859 45 1 9.2094 0.5833 5.1277 46 1 10.8892 0.7847 4.5706 47 1 11.2264 1.5996 2.2891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099864915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:06 Heat of formation + Delta-G solvation = -124.845181 kcal Electronic energy + Delta-G solvation = -29231.554486 eV Core-core repulsion = 25030.145669 eV Total energy + Delta-G solvation = -4201.408817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.48575 -39.41046 -38.06761 -37.52296 -35.59824 -34.90358 -34.22516 -31.91400 -30.63482 -29.75553 -28.82658 -28.04511 -26.73155 -25.74600 -24.73044 -22.36429 -21.96527 -20.49634 -19.74189 -19.25485 -17.68503 -17.44858 -17.06653 -16.95600 -16.42397 -16.24031 -15.85497 -15.41495 -14.98666 -14.92776 -14.58484 -14.44056 -14.11173 -13.87642 -13.56927 -13.31808 -13.18690 -13.11395 -12.90503 -12.70127 -12.50471 -12.18694 -12.07548 -11.90105 -11.74831 -11.19969 -11.01496 -10.83185 -10.70414 -10.29414 -10.24435 -10.13884 -10.04195 -10.02035 -9.94739 -9.64918 -9.35212 -8.84454 -8.66828 -8.39838 -6.67176 -5.77907 -3.19824 2.26597 2.47288 2.79921 3.37874 3.41598 3.44765 3.45965 3.64504 4.28713 4.48045 4.65575 4.69157 4.73755 4.84800 4.90622 4.92759 4.97001 5.02606 5.11701 5.24391 5.28880 5.32634 5.38241 5.40312 5.41590 5.61781 5.78204 5.96949 6.02679 6.26214 6.39628 6.50537 6.59544 6.62094 6.64784 6.82598 6.94495 7.03910 7.40018 7.66810 7.75009 7.78525 7.94870 8.09946 8.42790 8.45266 9.19815 9.82954 10.39821 11.30748 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.002430 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.188512 B =11519.653201 C =11783.325649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.521 3.479 5 O -0.515 6.515 6 N -0.599 5.599 7 C 0.079 3.921 8 C 0.098 3.902 9 C 0.492 3.508 10 O -0.534 6.534 11 N -0.718 5.718 12 C 0.163 3.837 13 H 0.089 0.911 14 C -0.141 4.141 15 C 0.173 3.827 16 N -0.582 5.582 17 C -0.249 4.249 18 H 0.064 0.936 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.118 3.882 26 C 0.082 3.918 27 H 0.046 0.954 28 O -0.555 6.555 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.401 0.599 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.019 0.981 44 H 0.255 0.745 45 H 0.027 0.973 46 H 0.061 0.939 47 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.823 -2.357 -18.875 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.308 3.692 5 O -0.389 6.389 6 N -0.334 5.334 7 C -0.064 4.064 8 C -0.029 4.029 9 C 0.276 3.724 10 O -0.411 6.411 11 N -0.369 5.369 12 C 0.059 3.941 13 H 0.107 0.893 14 C -0.181 4.181 15 C 0.047 3.953 16 N -0.304 5.304 17 C -0.378 4.378 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.734 3.266 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.210 1.210 25 C -0.010 4.010 26 C 0.020 3.980 27 H 0.064 0.936 28 O -0.360 6.360 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.235 0.765 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -14.574 -2.575 -18.134 23.407 hybrid contribution 1.287 0.560 0.143 1.411 sum -13.286 -2.015 -17.991 22.456 Atomic orbital electron populations 1.22845 0.80301 1.03382 1.00123 1.88021 1.19839 1.25242 1.95411 1.22245 0.91438 0.86974 1.02566 1.20215 0.88795 0.84039 0.76176 1.90731 1.74427 1.26178 1.47587 1.47274 1.05277 1.06652 1.74223 1.21872 0.99214 0.83632 1.01679 1.21328 0.80804 1.05599 0.95144 1.21053 0.82847 0.76741 0.91734 1.90705 1.55279 1.49143 1.45930 1.46158 1.06745 1.74193 1.09785 1.21006 0.93017 0.98539 0.81538 0.89325 1.22463 1.00107 0.94521 1.01036 1.20831 0.86924 0.98377 0.89187 1.43960 1.10554 1.08813 1.67108 1.19071 0.85368 1.19768 1.13609 0.91817 1.25032 0.96912 1.01729 0.96073 1.70027 1.24904 1.34825 1.24933 0.86352 0.82428 0.80242 0.77608 1.21045 1.21682 1.20954 1.21538 0.99177 0.89275 0.90991 1.22619 0.88709 0.92714 0.93918 0.93613 1.86427 1.23006 1.55355 1.71225 0.93681 0.93849 0.89038 0.89891 0.90229 0.92083 0.90873 0.90349 0.87293 0.86929 0.76534 0.91582 0.93199 0.89124 0.96293 0.93545 0.95540 0.92048 0.78114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.37 -4.37 10.24 -55.14 -0.56 -4.93 16 3 C 0.05 0.46 4.97 36.00 0.18 0.64 16 4 C 0.52 6.90 7.75 -10.99 -0.09 6.81 16 5 O -0.52 -9.13 16.08 -14.35 -0.23 -9.36 16 6 N -0.60 -6.54 2.36 -182.96 -0.43 -6.98 16 7 C 0.08 0.55 10.24 59.85 0.61 1.16 16 8 C 0.10 1.06 5.89 -5.19 -0.03 1.03 16 9 C 0.49 7.48 7.86 -10.98 -0.09 7.40 16 10 O -0.53 -10.36 16.09 5.56 0.09 -10.27 16 11 N -0.72 -10.59 5.05 -53.76 -0.27 -10.86 16 12 C 0.16 2.94 2.20 -67.88 -0.15 2.79 16 13 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 14 C -0.14 -2.90 5.51 -26.61 -0.15 -3.04 16 15 C 0.17 4.26 5.33 -3.56 -0.02 4.24 16 16 N -0.58 -14.46 2.95 -172.10 -0.51 -14.96 16 17 C -0.25 -6.74 9.59 -15.06 -0.14 -6.89 16 18 H 0.06 1.68 7.89 -52.48 -0.41 1.26 16 19 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 20 N -0.90 -26.43 11.18 55.49 0.62 -25.81 16 21 Si 0.90 21.71 29.59 -169.99 -5.03 16.69 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 C 0.12 2.40 6.15 -3.71 -0.02 2.37 16 26 C 0.08 1.38 3.38 -26.61 -0.09 1.29 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 O -0.56 -8.95 12.09 -35.23 -0.43 -9.38 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.67 7.40 -51.93 -0.38 0.29 16 33 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.43 6.44 -51.93 -0.33 0.09 16 36 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 37 H 0.11 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.11 1.21 7.42 -51.93 -0.39 0.82 16 39 H 0.40 4.92 8.26 -40.82 -0.34 4.58 16 40 H 0.07 1.41 7.61 -51.93 -0.40 1.01 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 2.49 6.04 -51.93 -0.31 2.18 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 47 H 0.37 4.76 9.08 45.56 0.41 5.17 16 LS Contribution 385.09 15.07 5.80 5.80 Total: -1.00 -37.92 385.09 -6.64 -44.56 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.73 Total: 6.43 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 1.04 Total: 19.08 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.59 Total: -58.61 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.13 Total: -33.94 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.92 -6.64 -44.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099864915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.286 kcal (2) G-P(sol) polarization free energy of solvation -37.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds