Wall clock time and date at job start Tue Mar 31 2020 04:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 114.00129 * 2 1 4 4 C 1.50693 * 109.47066 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00297 * 0.02562 * 4 3 2 6 6 N 1.34784 * 119.99964 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00016 * 0.02562 * 6 4 3 8 8 C 1.46494 * 119.99841 * 180.02562 * 6 4 3 9 9 C 1.50706 * 109.47023 * 269.99739 * 8 6 4 10 10 O 1.21280 * 120.00109 * 0.02562 * 9 8 6 11 11 N 1.34776 * 119.99495 * 180.02562 * 9 8 6 12 12 C 1.46503 * 119.99454 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.45213 * 35.03373 * 12 11 9 14 14 C 1.53040 * 109.46105 * 275.06822 * 12 11 9 15 15 C 1.53194 * 109.31619 * 178.61886 * 14 12 11 16 16 N 1.47200 * 108.85704 * 54.64696 * 15 14 12 17 17 C 1.36935 * 120.81239 * 126.33781 * 16 15 14 18 18 H 1.08004 * 119.99817 * 207.53790 * 17 16 15 19 19 C 1.38804 * 120.00238 * 27.53989 * 17 16 15 20 20 N 1.31624 * 120.00025 * 17.25587 * 19 17 16 21 21 Si 1.86801 * 120.00311 * 197.25673 * 19 17 16 22 22 H 1.48497 * 109.47244 * 60.00150 * 21 19 17 23 23 H 1.48504 * 109.46988 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47113 * 300.00082 * 21 19 17 25 25 C 1.46928 * 118.55549 * 306.48491 * 16 15 14 26 26 C 1.53045 * 109.45947 * 155.00189 * 12 11 9 27 27 H 1.08995 * 109.49427 * 301.33515 * 26 12 11 28 28 O 1.42895 * 109.52405 * 61.41889 * 26 12 11 29 29 H 1.09001 * 109.47028 * 300.00050 * 1 2 3 30 30 H 1.09000 * 109.46810 * 60.00001 * 1 2 3 31 31 H 1.09000 * 109.46837 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46932 * 60.00144 * 3 2 1 33 33 H 1.09000 * 109.47150 * 300.00438 * 3 2 1 34 34 H 1.08997 * 109.47257 * 270.00129 * 7 6 4 35 35 H 1.09001 * 109.46845 * 29.99823 * 7 6 4 36 36 H 1.08997 * 109.46913 * 149.99836 * 7 6 4 37 37 H 1.09004 * 109.47192 * 150.00406 * 8 6 4 38 38 H 1.09000 * 109.47405 * 30.00139 * 8 6 4 39 39 H 0.96994 * 120.00576 * 0.02562 * 11 9 8 40 40 H 1.09007 * 109.49422 * 298.56663 * 14 12 11 41 41 H 1.08995 * 109.49988 * 58.66145 * 14 12 11 42 42 H 1.09001 * 109.58692 * 174.42315 * 15 14 12 43 43 H 1.09005 * 109.58011 * 294.84744 * 15 14 12 44 44 H 0.96996 * 120.00327 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.58424 * 293.67784 * 25 16 15 46 46 H 1.09002 * 109.58777 * 173.39544 * 25 16 15 47 47 H 0.96699 * 114.00376 * 179.86006 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2968 0.0013 7 6 3.6466 3.6194 0.0019 8 6 5.7369 2.1810 0.0013 9 6 6.2376 2.1406 1.4222 10 8 5.4518 2.2020 2.3440 11 7 7.5585 2.0364 1.6684 12 6 8.0452 1.9966 3.0497 13 1 7.3284 1.4605 3.6718 14 6 8.2076 3.4250 3.5745 15 6 8.6835 3.3791 5.0299 16 7 9.9083 2.5661 5.1046 17 6 11.0464 3.0637 5.6809 18 1 12.0140 2.7020 5.3655 19 6 10.9567 4.0331 6.6703 20 7 9.8151 4.2329 7.2943 21 14 12.4560 5.0542 7.1164 22 1 12.9179 5.8038 5.9207 23 1 12.1000 6.0115 8.1944 24 1 13.5420 4.1585 7.5891 25 6 9.8852 1.2082 4.5439 26 6 9.3960 1.2784 3.0939 27 1 9.2843 0.2690 2.6983 28 8 10.3453 1.9978 2.3046 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.4904 3.9479 -1.0256 35 1 2.6868 3.5643 0.5156 36 1 4.2938 4.3298 0.5162 37 1 6.1695 3.0398 -0.5120 38 1 6.0289 1.2654 -0.5130 39 1 8.1870 1.9876 0.9312 40 1 8.9427 3.9540 2.9679 41 1 7.2503 3.9433 3.5208 42 1 8.8955 4.3904 5.3770 43 1 7.9096 2.9312 5.6533 44 1 9.7524 4.9100 7.9859 45 1 9.2094 0.5833 5.1277 46 1 10.8892 0.7847 4.5706 47 1 11.2264 1.5996 2.2891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099864915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:05 Heat of formation + Delta-G solvation = -156.176982 kcal Electronic energy + Delta-G solvation = -29232.913135 eV Core-core repulsion = 25030.145669 eV Total energy + Delta-G solvation = -4202.767466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.53019 -40.63500 -39.39926 -38.39746 -36.60642 -36.52377 -35.63305 -33.72403 -32.04789 -31.05514 -30.28669 -28.89622 -27.45831 -26.96882 -26.05669 -24.03000 -23.65973 -21.72363 -21.16162 -20.39920 -19.06759 -18.50936 -18.34019 -17.84599 -17.52152 -17.28445 -17.20807 -16.64433 -16.39305 -16.02808 -15.91229 -15.71375 -15.44442 -15.28496 -15.08059 -14.69805 -14.49149 -13.97956 -13.87863 -13.81145 -13.65620 -13.39847 -13.16093 -13.06339 -12.85985 -12.77345 -12.64491 -12.46669 -12.34410 -12.09617 -12.08343 -11.92034 -11.46777 -11.15180 -10.94108 -10.88293 -10.77944 -10.51389 -10.01224 -9.78038 -8.69379 -7.86937 -5.31907 1.35426 1.47251 1.50457 1.56884 1.60794 1.67734 2.28611 2.51270 2.96642 3.27693 3.37363 3.54829 3.60471 3.78635 3.86595 4.03014 4.06928 4.18081 4.20553 4.25423 4.29282 4.35067 4.37013 4.49572 4.56449 4.68849 4.72826 4.75153 4.85414 4.85803 4.92018 4.94598 4.97936 5.10706 5.26152 5.43863 5.50866 5.62291 5.67552 5.97986 6.26563 6.36494 6.57893 6.97106 7.03856 7.12740 7.26972 7.82128 8.35722 9.20207 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.002430 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.188512 B =11519.653201 C =11783.325649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.049 3.951 4 C 0.507 3.493 5 O -0.574 6.574 6 N -0.598 5.598 7 C 0.071 3.929 8 C 0.102 3.898 9 C 0.488 3.512 10 O -0.582 6.582 11 N -0.705 5.705 12 C 0.168 3.832 13 H 0.063 0.937 14 C -0.120 4.120 15 C 0.181 3.819 16 N -0.598 5.598 17 C -0.253 4.253 18 H 0.074 0.926 19 C -0.058 4.058 20 N -0.941 5.941 21 Si 0.971 3.029 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.273 1.273 25 C 0.110 3.890 26 C 0.101 3.899 27 H 0.080 0.920 28 O -0.560 6.560 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.154 0.846 38 H 0.116 0.884 39 H 0.417 0.583 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.057 0.943 43 H -0.012 1.012 44 H 0.249 0.751 45 H 0.018 0.982 46 H 0.077 0.923 47 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.520 -1.909 -21.706 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.030 4.030 4 C 0.296 3.704 5 O -0.453 6.453 6 N -0.331 5.331 7 C -0.071 4.071 8 C -0.024 4.024 9 C 0.274 3.726 10 O -0.461 6.461 11 N -0.357 5.357 12 C 0.063 3.937 13 H 0.081 0.919 14 C -0.160 4.160 15 C 0.055 3.945 16 N -0.321 5.321 17 C -0.383 4.383 18 H 0.092 0.908 19 C -0.253 4.253 20 N -0.587 5.587 21 Si 0.799 3.201 22 H -0.204 1.204 23 H -0.225 1.225 24 H -0.199 1.199 25 C -0.016 4.016 26 C 0.039 3.961 27 H 0.098 0.902 28 O -0.367 6.367 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.137 0.863 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.171 0.829 38 H 0.134 0.866 39 H 0.254 0.746 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.006 0.994 44 H 0.058 0.942 45 H 0.035 0.965 46 H 0.095 0.905 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -14.244 -2.116 -21.031 25.489 hybrid contribution 1.161 0.397 1.025 1.599 sum -13.084 -1.719 -20.006 23.966 Atomic orbital electron populations 1.23047 0.78141 1.04212 1.01715 1.87963 1.22327 1.26835 1.95781 1.22396 0.88886 0.86718 1.04995 1.21016 0.90544 0.83700 0.75091 1.90689 1.75669 1.28356 1.50547 1.47496 1.05304 1.07634 1.72709 1.22178 0.99321 0.81436 1.04119 1.21457 0.81252 1.07734 0.92004 1.21931 0.82315 0.75132 0.93227 1.90689 1.56371 1.51190 1.47856 1.45932 1.07258 1.73843 1.08692 1.20648 0.93567 0.96391 0.83087 0.91914 1.22142 0.99325 0.96430 0.98111 1.20540 0.86471 0.96264 0.91244 1.44164 1.09824 1.10706 1.67413 1.19484 0.86454 1.19404 1.12935 0.90805 1.25854 0.99582 1.03266 0.96557 1.70203 1.27121 1.35551 1.25825 0.85292 0.79282 0.78503 0.77063 1.20367 1.22502 1.19855 1.21792 1.00160 0.86835 0.92849 1.22300 0.87923 0.94159 0.91690 0.90215 1.86389 1.24091 1.55781 1.70445 0.92699 0.91539 0.88763 0.88508 0.86263 0.88472 0.89744 0.90867 0.82884 0.86583 0.74592 0.91791 0.93721 0.92495 0.99404 0.94241 0.96456 0.90485 0.76012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -9.46 10.24 -129.94 -1.33 -10.79 16 3 C 0.05 0.86 4.97 71.23 0.35 1.21 16 4 C 0.51 12.99 7.75 87.65 0.68 13.67 16 5 O -0.57 -20.61 16.08 16.01 0.26 -20.36 16 6 N -0.60 -11.88 2.36 -851.14 -2.01 -13.89 16 7 C 0.07 0.78 10.24 127.77 1.31 2.09 16 8 C 0.10 1.98 5.89 85.64 0.50 2.49 16 9 C 0.49 14.33 7.86 87.66 0.69 15.02 16 10 O -0.58 -22.77 16.09 -3.03 -0.05 -22.82 16 11 N -0.71 -19.69 5.05 -442.38 -2.23 -21.92 16 12 C 0.17 6.01 2.20 45.02 0.10 6.11 16 13 H 0.06 2.61 7.58 -2.39 -0.02 2.59 16 14 C -0.12 -4.99 5.51 30.67 0.17 -4.82 16 15 C 0.18 9.31 5.33 86.31 0.46 9.77 16 16 N -0.60 -30.04 2.95 -698.39 -2.06 -32.10 16 17 C -0.25 -13.72 9.59 84.03 0.81 -12.91 16 18 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 19 C -0.06 -3.26 4.92 84.86 0.42 -2.84 16 20 N -0.94 -57.09 11.18 21.65 0.24 -56.84 16 21 Si 0.97 45.07 29.59 68.60 2.03 47.10 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 25 C 0.11 4.39 6.15 86.36 0.53 4.92 16 26 C 0.10 3.19 3.38 30.67 0.10 3.30 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 O -0.56 -16.36 12.09 -148.98 -1.80 -18.16 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.38 7.40 -2.38 -0.02 1.36 16 33 H 0.12 1.06 8.11 -2.39 -0.02 1.04 16 34 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.08 0.74 6.44 -2.39 -0.02 0.73 16 36 H 0.07 0.92 8.07 -2.39 -0.02 0.90 16 37 H 0.15 1.61 8.07 -2.38 -0.02 1.59 16 38 H 0.12 2.26 7.42 -2.39 -0.02 2.25 16 39 H 0.42 9.02 8.26 -92.71 -0.77 8.26 16 40 H 0.06 2.69 7.61 -2.38 -0.02 2.67 16 41 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 3.29 6.04 -2.39 -0.01 3.27 16 43 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 44 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.08 2.79 7.93 -2.39 -0.02 2.77 16 47 H 0.39 8.55 9.08 -74.06 -0.67 7.88 16 Total: -1.00 -87.37 385.09 -0.03 -87.40 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -0.44 Total: 22.82 kcal Atomic # 6 Polarization: 32.19 SS G_CDS: 7.37 Total: 39.56 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -6.06 Total: -124.75 kcal Atomic # 8 Polarization: -69.20 SS G_CDS: -2.92 Total: -72.13 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -87.37 -0.03 -87.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099864915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.780 kcal (2) G-P(sol) polarization free energy of solvation -87.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds