Wall clock time and date at job start Tue Mar 31 2020 04:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99981 * 2 1 4 4 C 1.50704 * 109.47138 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99977 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99985 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99986 * 0.02562 * 6 4 3 8 8 C 1.46499 * 120.00043 * 180.02562 * 6 4 3 9 9 C 1.50703 * 109.47091 * 90.00325 * 8 6 4 10 10 O 1.21287 * 120.00125 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00405 * 180.02562 * 9 8 6 12 12 C 1.46494 * 120.00613 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.45549 * 324.97648 * 12 11 9 14 14 C 1.53040 * 109.44767 * 84.93459 * 12 11 9 15 15 C 1.53187 * 109.31419 * 181.38208 * 14 12 11 16 16 N 1.46925 * 108.77308 * 305.36687 * 15 14 12 17 17 C 1.36946 * 120.63000 * 233.60524 * 16 15 14 18 18 H 1.08000 * 119.99786 * 152.79533 * 17 16 15 19 19 C 1.38811 * 119.99942 * 332.79831 * 17 16 15 20 20 N 1.31619 * 119.99983 * 159.75660 * 19 17 16 21 21 Si 1.86800 * 119.99994 * 339.75123 * 19 17 16 22 22 H 1.48497 * 109.47219 * 94.89903 * 21 19 17 23 23 H 1.48509 * 109.46986 * 214.89817 * 21 19 17 24 24 H 1.48497 * 109.47039 * 334.89653 * 21 19 17 25 25 C 1.46923 * 118.74027 * 53.61075 * 16 15 14 26 26 C 1.53033 * 109.46359 * 204.99978 * 12 11 9 27 27 H 1.09004 * 109.49539 * 298.61023 * 26 12 11 28 28 O 1.42897 * 109.49781 * 58.67629 * 26 12 11 29 29 H 1.09003 * 109.46463 * 59.99989 * 1 2 3 30 30 H 1.09001 * 109.47057 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47142 * 300.00307 * 1 2 3 32 32 H 1.09008 * 109.47323 * 59.99721 * 3 2 1 33 33 H 1.09000 * 109.47711 * 299.99993 * 3 2 1 34 34 H 1.09000 * 109.47758 * 269.99714 * 7 6 4 35 35 H 1.08998 * 109.47408 * 30.00059 * 7 6 4 36 36 H 1.09005 * 109.47169 * 149.99902 * 7 6 4 37 37 H 1.08998 * 109.47208 * 330.00690 * 8 6 4 38 38 H 1.08996 * 109.47369 * 210.00071 * 8 6 4 39 39 H 0.97005 * 119.99333 * 359.97438 * 11 9 8 40 40 H 1.09007 * 109.49907 * 301.33296 * 14 12 11 41 41 H 1.09000 * 109.49742 * 61.43090 * 14 12 11 42 42 H 1.09004 * 109.58872 * 65.15502 * 15 14 12 43 43 H 1.08999 * 109.58678 * 185.57966 * 15 14 12 44 44 H 0.96997 * 120.00186 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.58592 * 186.60561 * 25 16 15 46 46 H 1.08999 * 109.58799 * 66.17744 * 25 16 15 47 47 H 0.96701 * 113.99780 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0342 0.0915 0.0006 6 7 4.2765 2.2968 0.0002 7 6 3.6465 3.6194 -0.0003 8 6 5.7369 2.1811 0.0003 9 6 6.2377 2.1410 -1.4206 10 8 5.4520 2.2025 -2.3425 11 7 7.5586 2.0358 -1.6669 12 6 8.0454 1.9962 -3.0480 13 1 7.3282 1.4612 -3.6705 14 6 8.2089 3.4249 -3.5718 15 6 8.6849 3.3797 -5.0271 16 7 9.9066 2.5667 -5.0999 17 6 11.0438 3.0662 -5.6766 18 1 12.0118 2.7022 -5.3654 19 6 10.9523 4.0406 -6.6611 20 7 11.9919 4.8004 -6.9336 21 14 9.3538 4.2732 -7.5993 22 1 8.5547 5.3473 -6.9569 23 1 9.6546 4.6523 -9.0033 24 1 8.5816 3.0049 -7.5836 25 6 9.8850 1.2075 -4.5423 26 6 9.3955 1.2771 -3.0924 27 1 10.1195 1.8251 -2.4894 28 8 9.2481 -0.0466 -2.5747 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.4902 3.9471 -1.0280 35 1 2.6867 3.5649 0.5136 36 1 4.2937 4.3304 0.5133 37 1 6.0289 1.2654 0.5143 38 1 6.1694 3.0398 0.5138 39 1 8.1869 1.9863 -0.9295 40 1 7.2518 3.9439 -3.5180 41 1 8.9443 3.9530 -2.9647 42 1 7.9109 2.9328 -5.6511 43 1 8.8978 4.3910 -5.3735 44 1 11.9279 5.4815 -7.6212 45 1 10.8898 0.7857 -4.5689 46 1 9.2089 0.5835 -5.1267 47 1 10.0667 -0.5614 -2.5724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099864916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:13 Heat of formation + Delta-G solvation = -121.164710 kcal Electronic energy + Delta-G solvation = -29267.798004 eV Core-core repulsion = 25066.548784 eV Total energy + Delta-G solvation = -4201.249220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.54307 -39.53388 -38.20582 -37.58505 -35.66114 -35.62866 -34.38270 -32.15125 -30.86179 -29.95359 -29.19220 -28.17178 -26.77963 -25.81898 -24.73439 -22.77339 -22.10885 -20.64859 -20.04575 -19.45377 -17.72254 -17.56046 -17.10172 -17.02169 -16.65507 -16.45501 -16.25294 -15.63999 -15.17492 -14.98854 -14.73950 -14.53817 -14.40013 -13.99273 -13.62130 -13.32410 -13.30772 -13.17977 -12.91588 -12.76278 -12.59725 -12.51433 -12.34808 -12.09862 -11.91797 -11.77465 -11.56020 -11.20032 -11.02192 -10.25017 -10.18658 -10.16443 -10.09096 -10.01379 -9.87653 -9.81363 -9.53916 -8.92047 -8.80853 -8.67682 -7.08870 -6.01815 -3.39819 2.21696 2.44713 2.72479 3.29527 3.31052 3.46498 3.50338 3.59508 4.24556 4.29805 4.47679 4.55566 4.72624 4.78286 4.79922 4.87083 4.90288 4.93994 4.99769 5.10614 5.14534 5.18512 5.30400 5.32629 5.39890 5.40730 5.56511 5.74586 5.79156 5.96005 6.02368 6.22932 6.28079 6.38763 6.51505 6.54616 6.58913 6.69726 6.78367 6.99757 7.61501 7.78210 7.91379 7.91560 8.24238 8.34190 8.83725 9.63300 9.98667 11.13530 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.019633 B = 0.002689 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.854018 B =10412.046007 C =10899.231553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.520 3.480 5 O -0.513 6.513 6 N -0.600 5.600 7 C 0.076 3.924 8 C 0.099 3.901 9 C 0.496 3.504 10 O -0.535 6.535 11 N -0.714 5.714 12 C 0.163 3.837 13 H 0.088 0.912 14 C -0.139 4.139 15 C 0.126 3.874 16 N -0.602 5.602 17 C -0.265 4.265 18 H 0.087 0.913 19 C 0.026 3.974 20 N -0.906 5.906 21 Si 0.881 3.119 22 H -0.288 1.288 23 H -0.302 1.302 24 H -0.268 1.268 25 C 0.124 3.876 26 C 0.080 3.920 27 H 0.061 0.939 28 O -0.568 6.568 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.398 0.602 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.031 0.969 43 H 0.077 0.923 44 H 0.264 0.736 45 H 0.070 0.930 46 H 0.034 0.966 47 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.874 -2.585 18.814 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.307 3.693 5 O -0.386 6.386 6 N -0.335 5.335 7 C -0.066 4.066 8 C -0.028 4.028 9 C 0.280 3.720 10 O -0.411 6.411 11 N -0.365 5.365 12 C 0.059 3.941 13 H 0.106 0.894 14 C -0.179 4.179 15 C 0.000 4.000 16 N -0.327 5.327 17 C -0.393 4.393 18 H 0.105 0.895 19 C -0.174 4.174 20 N -0.548 5.548 21 Si 0.711 3.289 22 H -0.216 1.216 23 H -0.230 1.230 24 H -0.193 1.193 25 C -0.004 4.004 26 C 0.019 3.981 27 H 0.079 0.921 28 O -0.373 6.373 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.232 0.768 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.052 0.948 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -18.606 -3.008 18.104 26.134 hybrid contribution -0.112 0.503 -0.442 0.679 sum -18.719 -2.505 17.662 25.857 Atomic orbital electron populations 1.22845 0.80290 1.03405 1.00107 1.88025 1.19845 1.25210 1.95403 1.22248 0.91420 0.86998 1.02529 1.20214 0.88797 0.84040 0.76250 1.90748 1.74383 1.26137 1.47352 1.47267 1.05249 1.06656 1.74349 1.21912 0.98477 0.83384 1.02872 1.21329 0.80815 1.05670 0.94985 1.21047 0.82667 0.76436 0.91809 1.90696 1.55229 1.49203 1.45991 1.45994 1.06985 1.74310 1.09186 1.20926 0.94679 0.96310 0.82224 0.89442 1.22412 1.01158 0.95017 0.99333 1.21375 0.88740 0.96686 0.93155 1.44324 1.10150 1.09788 1.68456 1.18891 0.85221 1.19909 1.15254 0.89527 1.25262 0.96689 0.97757 0.97642 1.69821 1.30502 1.20803 1.33703 0.86976 0.84358 0.78258 0.79268 1.21551 1.22996 1.19300 1.21563 0.99997 0.87828 0.90975 1.22715 0.95802 0.82754 0.96851 0.92087 1.86506 1.38134 1.26420 1.86195 0.93705 0.89015 0.93839 0.90255 0.89923 0.91640 0.90917 0.90519 0.86791 0.87299 0.76826 0.91610 0.91298 0.95110 0.90459 0.92646 0.91145 0.94815 0.77731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.37 -4.33 10.24 -55.14 -0.56 -4.89 16 3 C 0.05 0.45 4.97 36.01 0.18 0.63 16 4 C 0.52 6.80 7.75 -10.98 -0.09 6.72 16 5 O -0.51 -9.12 16.08 -14.35 -0.23 -9.35 16 6 N -0.60 -6.31 2.36 -182.95 -0.43 -6.74 16 7 C 0.08 0.49 10.28 59.85 0.62 1.11 16 8 C 0.10 1.02 5.93 -5.19 -0.03 0.99 16 9 C 0.50 7.27 7.86 -10.98 -0.09 7.18 16 10 O -0.53 -10.07 16.09 5.55 0.09 -9.98 16 11 N -0.71 -9.94 4.92 -53.77 -0.26 -10.20 16 12 C 0.16 2.78 2.12 -67.90 -0.14 2.63 16 13 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 14 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 15 C 0.13 2.78 4.19 -3.71 -0.02 2.76 16 16 N -0.60 -14.00 2.77 -172.32 -0.48 -14.48 16 17 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 18 H 0.09 2.49 8.05 -52.49 -0.42 2.06 16 19 C 0.03 0.74 5.24 -17.43 -0.09 0.65 16 20 N -0.91 -27.27 13.97 55.49 0.78 -26.50 16 21 Si 0.88 22.34 24.35 -169.99 -4.14 18.20 16 22 H -0.29 -7.05 6.70 56.52 0.38 -6.67 16 23 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 24 H -0.27 -6.76 6.45 56.52 0.36 -6.39 16 25 C 0.12 2.38 6.14 -3.71 -0.02 2.35 16 26 C 0.08 1.29 3.14 -26.62 -0.08 1.21 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 O -0.57 -8.30 13.16 -35.23 -0.46 -8.76 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.46 7.40 -51.92 -0.38 0.08 16 33 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.27 6.44 -51.93 -0.33 -0.06 16 36 H 0.08 0.34 7.89 -51.93 -0.41 -0.07 16 37 H 0.11 1.21 7.42 -51.93 -0.39 0.82 16 38 H 0.11 0.69 7.89 -51.93 -0.41 0.28 16 39 H 0.40 4.36 8.60 -40.82 -0.35 4.01 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.03 0.70 6.98 -51.93 -0.36 0.33 16 43 H 0.08 1.84 4.50 -51.93 -0.23 1.60 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.07 1.29 7.93 -51.93 -0.41 0.87 16 46 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.38 3.90 9.08 45.56 0.41 4.31 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -39.07 379.86 -5.62 -44.69 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.68 Total: 4.76 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 1.05 Total: 17.53 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.40 Total: -57.92 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.17 Total: -32.98 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.20 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.07 -5.62 -44.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099864916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.475 kcal (2) G-P(sol) polarization free energy of solvation -39.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds