Wall clock time and date at job start Tue Mar 31 2020 04:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99981 * 2 1 4 4 C 1.50704 * 109.47138 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99977 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99985 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99986 * 0.02562 * 6 4 3 8 8 C 1.46499 * 120.00043 * 180.02562 * 6 4 3 9 9 C 1.50703 * 109.47091 * 90.00325 * 8 6 4 10 10 O 1.21287 * 120.00125 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00405 * 180.02562 * 9 8 6 12 12 C 1.46494 * 120.00613 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.45549 * 324.97648 * 12 11 9 14 14 C 1.53040 * 109.44767 * 84.93459 * 12 11 9 15 15 C 1.53187 * 109.31419 * 181.38208 * 14 12 11 16 16 N 1.46925 * 108.77308 * 305.36687 * 15 14 12 17 17 C 1.36946 * 120.63000 * 233.60524 * 16 15 14 18 18 H 1.08000 * 119.99786 * 152.79533 * 17 16 15 19 19 C 1.38811 * 119.99942 * 332.79831 * 17 16 15 20 20 N 1.31619 * 119.99983 * 159.75660 * 19 17 16 21 21 Si 1.86800 * 119.99994 * 339.75123 * 19 17 16 22 22 H 1.48497 * 109.47219 * 94.89903 * 21 19 17 23 23 H 1.48509 * 109.46986 * 214.89817 * 21 19 17 24 24 H 1.48497 * 109.47039 * 334.89653 * 21 19 17 25 25 C 1.46923 * 118.74027 * 53.61075 * 16 15 14 26 26 C 1.53033 * 109.46359 * 204.99978 * 12 11 9 27 27 H 1.09004 * 109.49539 * 298.61023 * 26 12 11 28 28 O 1.42897 * 109.49781 * 58.67629 * 26 12 11 29 29 H 1.09003 * 109.46463 * 59.99989 * 1 2 3 30 30 H 1.09001 * 109.47057 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47142 * 300.00307 * 1 2 3 32 32 H 1.09008 * 109.47323 * 59.99721 * 3 2 1 33 33 H 1.09000 * 109.47711 * 299.99993 * 3 2 1 34 34 H 1.09000 * 109.47758 * 269.99714 * 7 6 4 35 35 H 1.08998 * 109.47408 * 30.00059 * 7 6 4 36 36 H 1.09005 * 109.47169 * 149.99902 * 7 6 4 37 37 H 1.08998 * 109.47208 * 330.00690 * 8 6 4 38 38 H 1.08996 * 109.47369 * 210.00071 * 8 6 4 39 39 H 0.97005 * 119.99333 * 359.97438 * 11 9 8 40 40 H 1.09007 * 109.49907 * 301.33296 * 14 12 11 41 41 H 1.09000 * 109.49742 * 61.43090 * 14 12 11 42 42 H 1.09004 * 109.58872 * 65.15502 * 15 14 12 43 43 H 1.08999 * 109.58678 * 185.57966 * 15 14 12 44 44 H 0.96997 * 120.00186 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.58592 * 186.60561 * 25 16 15 46 46 H 1.08999 * 109.58799 * 66.17744 * 25 16 15 47 47 H 0.96701 * 113.99780 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0342 0.0915 0.0006 6 7 4.2765 2.2968 0.0002 7 6 3.6465 3.6194 -0.0003 8 6 5.7369 2.1811 0.0003 9 6 6.2377 2.1410 -1.4206 10 8 5.4520 2.2025 -2.3425 11 7 7.5586 2.0358 -1.6669 12 6 8.0454 1.9962 -3.0480 13 1 7.3282 1.4612 -3.6705 14 6 8.2089 3.4249 -3.5718 15 6 8.6849 3.3797 -5.0271 16 7 9.9066 2.5667 -5.0999 17 6 11.0438 3.0662 -5.6766 18 1 12.0118 2.7022 -5.3654 19 6 10.9523 4.0406 -6.6611 20 7 11.9919 4.8004 -6.9336 21 14 9.3538 4.2732 -7.5993 22 1 8.5547 5.3473 -6.9569 23 1 9.6546 4.6523 -9.0033 24 1 8.5816 3.0049 -7.5836 25 6 9.8850 1.2075 -4.5423 26 6 9.3955 1.2771 -3.0924 27 1 10.1195 1.8251 -2.4894 28 8 9.2481 -0.0466 -2.5747 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.4902 3.9471 -1.0280 35 1 2.6867 3.5649 0.5136 36 1 4.2937 4.3304 0.5133 37 1 6.0289 1.2654 0.5143 38 1 6.1694 3.0398 0.5138 39 1 8.1869 1.9863 -0.9295 40 1 7.2518 3.9439 -3.5180 41 1 8.9443 3.9530 -2.9647 42 1 7.9109 2.9328 -5.6511 43 1 8.8978 4.3910 -5.3735 44 1 11.9279 5.4815 -7.6212 45 1 10.8898 0.7857 -4.5689 46 1 9.2089 0.5835 -5.1267 47 1 10.0667 -0.5614 -2.5724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099864916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:11 Heat of formation + Delta-G solvation = -154.955638 kcal Electronic energy + Delta-G solvation = -29269.263288 eV Core-core repulsion = 25066.548784 eV Total energy + Delta-G solvation = -4202.714504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.55262 -40.70352 -39.48679 -38.41405 -37.15340 -36.56511 -35.74820 -34.05108 -32.27988 -31.12637 -30.57091 -28.93896 -27.46696 -26.95444 -26.01383 -24.32249 -23.76959 -21.80271 -21.49755 -20.44444 -19.05961 -18.52121 -18.37133 -18.09925 -17.87228 -17.58030 -17.22837 -16.86871 -16.41265 -16.22174 -16.07670 -15.83238 -15.46768 -15.28845 -14.99945 -14.70183 -14.57318 -14.05657 -14.05340 -13.93503 -13.83457 -13.75406 -13.35710 -13.21450 -13.20198 -13.00644 -12.81770 -12.67616 -12.35474 -12.16979 -11.91293 -11.67242 -11.49580 -11.21042 -11.19300 -10.95095 -10.78861 -10.72014 -10.09231 -9.79776 -9.04048 -8.20822 -5.54430 1.25786 1.33523 1.38565 1.46253 1.60693 1.67636 2.25029 2.36441 2.89875 2.95736 3.09963 3.32688 3.53588 3.70938 3.84083 3.97851 4.03897 4.07018 4.17368 4.20832 4.21552 4.28958 4.31873 4.37806 4.48262 4.53375 4.55265 4.66939 4.68723 4.76966 4.82574 4.84839 4.87522 4.94443 4.99613 5.21759 5.27547 5.44121 5.79454 5.97035 6.08165 6.25759 6.54002 6.76887 6.89619 7.03428 7.24983 7.53748 7.93871 8.98140 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.019633 B = 0.002689 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.854018 B =10412.046007 C =10899.231553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.049 3.951 4 C 0.506 3.494 5 O -0.575 6.575 6 N -0.598 5.598 7 C 0.069 3.931 8 C 0.101 3.899 9 C 0.491 3.509 10 O -0.582 6.582 11 N -0.703 5.703 12 C 0.168 3.832 13 H 0.055 0.945 14 C -0.123 4.123 15 C 0.122 3.878 16 N -0.613 5.613 17 C -0.248 4.248 18 H 0.066 0.934 19 C -0.026 4.026 20 N -0.949 5.949 21 Si 0.935 3.065 22 H -0.276 1.276 23 H -0.309 1.309 24 H -0.269 1.269 25 C 0.119 3.881 26 C 0.099 3.901 27 H 0.076 0.924 28 O -0.571 6.571 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.159 0.841 39 H 0.416 0.584 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.059 0.941 44 H 0.263 0.737 45 H 0.078 0.922 46 H 0.027 0.973 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.565 -1.920 21.373 29.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.030 4.030 4 C 0.295 3.705 5 O -0.453 6.453 6 N -0.331 5.331 7 C -0.072 4.072 8 C -0.025 4.025 9 C 0.277 3.723 10 O -0.461 6.461 11 N -0.354 5.354 12 C 0.062 3.938 13 H 0.073 0.927 14 C -0.164 4.164 15 C -0.003 4.003 16 N -0.339 5.339 17 C -0.377 4.377 18 H 0.083 0.917 19 C -0.222 4.222 20 N -0.595 5.595 21 Si 0.764 3.236 22 H -0.202 1.202 23 H -0.237 1.237 24 H -0.194 1.194 25 C -0.007 4.007 26 C 0.038 3.962 27 H 0.094 0.906 28 O -0.378 6.378 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.176 0.824 39 H 0.253 0.747 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.045 0.955 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -20.313 -2.333 20.724 29.112 hybrid contribution 0.420 0.216 -1.195 1.285 sum -19.893 -2.116 19.529 27.957 Atomic orbital electron populations 1.23046 0.78131 1.04200 1.01732 1.87968 1.22341 1.26878 1.95781 1.22407 0.88864 0.86718 1.05008 1.21042 0.90584 0.83744 0.75106 1.90705 1.75687 1.28470 1.50468 1.47487 1.05318 1.07622 1.72656 1.22216 1.00492 0.81690 1.02851 1.21491 0.81220 1.07775 0.92046 1.21895 0.82226 0.74966 0.93220 1.90678 1.56323 1.51297 1.47841 1.45806 1.07459 1.73834 1.08332 1.20605 0.94375 0.95199 0.83578 0.92709 1.22200 1.01410 0.96049 0.96705 1.21348 0.87990 0.95330 0.95667 1.44411 1.09382 1.11584 1.68511 1.18882 0.85829 1.18655 1.14320 0.91667 1.25784 0.99152 0.98369 0.98898 1.69919 1.32467 1.22180 1.34913 0.86101 0.81433 0.78358 0.77670 1.20234 1.23734 1.19418 1.21746 1.00611 0.85631 0.92732 1.22321 0.95299 0.83804 0.94765 0.90591 1.86485 1.39939 1.25812 1.85604 0.92694 0.88819 0.91483 0.86145 0.88551 0.93062 0.87851 0.87865 0.86982 0.82387 0.74738 0.91119 0.90265 0.95912 0.92248 0.92797 0.90310 0.95473 0.75303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -9.34 10.24 -129.94 -1.33 -10.67 16 3 C 0.05 0.82 4.97 71.24 0.35 1.18 16 4 C 0.51 12.71 7.75 87.66 0.68 13.39 16 5 O -0.57 -20.73 16.08 16.00 0.26 -20.48 16 6 N -0.60 -11.18 2.36 -851.13 -2.01 -13.19 16 7 C 0.07 0.64 10.28 127.77 1.31 1.96 16 8 C 0.10 1.83 5.93 85.63 0.51 2.34 16 9 C 0.49 13.58 7.86 87.66 0.69 14.27 16 10 O -0.58 -21.67 16.09 -3.05 -0.05 -21.72 16 11 N -0.70 -18.05 4.92 -442.42 -2.18 -20.23 16 12 C 0.17 5.51 2.12 45.02 0.10 5.60 16 13 H 0.05 2.19 7.58 -2.39 -0.02 2.18 16 14 C -0.12 -4.30 5.65 30.67 0.17 -4.13 16 15 C 0.12 5.30 4.19 86.36 0.36 5.67 16 16 N -0.61 -28.23 2.77 -699.10 -1.94 -30.17 16 17 C -0.25 -13.55 10.04 84.03 0.84 -12.70 16 18 H 0.07 3.80 8.05 -2.91 -0.02 3.78 16 19 C -0.03 -1.52 5.24 84.86 0.44 -1.07 16 20 N -0.95 -58.22 13.97 21.65 0.30 -57.91 16 21 Si 0.93 46.82 24.35 68.60 1.67 48.49 16 22 H -0.28 -13.10 6.70 99.48 0.67 -12.43 16 23 H -0.31 -15.66 7.11 99.48 0.71 -14.96 16 24 H -0.27 -13.35 6.45 99.48 0.64 -12.71 16 25 C 0.12 4.45 6.14 86.36 0.53 4.98 16 26 C 0.10 3.01 3.14 30.67 0.10 3.11 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 O -0.57 -15.32 13.16 -148.98 -1.96 -17.28 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.12 0.95 7.40 -2.38 -0.02 0.93 16 33 H 0.10 1.32 8.11 -2.39 -0.02 1.30 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 35 H 0.10 0.32 6.44 -2.39 -0.02 0.31 16 36 H 0.10 0.44 7.89 -2.38 -0.02 0.42 16 37 H 0.11 2.16 7.42 -2.39 -0.02 2.14 16 38 H 0.16 1.26 7.89 -2.39 -0.02 1.25 16 39 H 0.42 7.80 8.60 -92.70 -0.80 7.00 16 40 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 41 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.02 1.03 6.98 -2.38 -0.02 1.01 16 43 H 0.06 2.79 4.50 -2.39 -0.01 2.78 16 44 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.08 2.79 7.93 -2.38 -0.02 2.77 16 46 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 47 H 0.40 7.10 9.08 -74.06 -0.67 6.42 16 Total: -1.00 -88.99 379.86 -0.47 -89.46 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -0.58 Total: 17.57 kcal Atomic # 6 Polarization: 28.80 SS G_CDS: 7.34 Total: 36.14 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -5.82 Total: -121.51 kcal Atomic # 8 Polarization: -67.06 SS G_CDS: -3.08 Total: -70.14 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.67 Total: 48.49 kcal Total: -88.99 -0.47 -89.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099864916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.494 kcal (2) G-P(sol) polarization free energy of solvation -88.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds