Wall clock time and date at job start Tue Mar 31 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00022 * 2 1 4 4 C 1.50700 * 109.47003 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00388 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00103 * 180.02562 * 4 3 2 7 7 C 1.46509 * 119.99804 * 359.97438 * 6 4 3 8 8 C 1.46499 * 120.00256 * 179.97438 * 6 4 3 9 9 C 1.50703 * 109.46932 * 89.99796 * 8 6 4 10 10 O 1.21278 * 120.00379 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99682 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99962 * 179.72650 * 11 9 8 13 13 H 1.09005 * 109.45869 * 325.27729 * 12 11 9 14 14 C 1.53043 * 109.46110 * 85.24615 * 12 11 9 15 15 C 1.53191 * 109.30960 * 58.65918 * 14 12 11 16 16 N 1.46921 * 108.77928 * 54.63241 * 15 14 12 17 17 C 1.36939 * 120.62958 * 126.36282 * 16 15 14 18 18 H 1.08000 * 120.00584 * 331.84463 * 17 16 15 19 19 C 1.38814 * 119.99555 * 151.83203 * 17 16 15 20 20 N 1.31618 * 120.00174 * 343.09002 * 19 17 16 21 21 Si 1.86806 * 119.99588 * 163.08398 * 19 17 16 22 22 H 1.48502 * 109.47244 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46995 * 120.00487 * 21 19 17 24 24 H 1.48500 * 109.46954 * 240.00365 * 21 19 17 25 25 C 1.46924 * 118.74054 * 306.39262 * 16 15 14 26 26 C 1.53037 * 109.46191 * 205.30330 * 12 11 9 27 27 H 1.09005 * 109.50168 * 181.39428 * 26 12 11 28 28 O 1.42903 * 109.49976 * 61.29501 * 26 12 11 29 29 H 1.09001 * 109.46939 * 299.99906 * 1 2 3 30 30 H 1.09004 * 109.46990 * 59.99814 * 1 2 3 31 31 H 1.08996 * 109.47313 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47157 * 60.00130 * 3 2 1 33 33 H 1.09007 * 109.47208 * 299.99827 * 3 2 1 34 34 H 1.09001 * 109.46743 * 270.00202 * 7 6 4 35 35 H 1.08993 * 109.47099 * 30.00251 * 7 6 4 36 36 H 1.08998 * 109.46955 * 150.00290 * 7 6 4 37 37 H 1.09000 * 109.47053 * 330.00240 * 8 6 4 38 38 H 1.09001 * 109.46875 * 209.99788 * 8 6 4 39 39 H 0.96996 * 120.00130 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.49479 * 178.61070 * 14 12 11 41 41 H 1.09004 * 109.49920 * 298.67262 * 14 12 11 42 42 H 1.09005 * 109.58129 * 174.42314 * 15 14 12 43 43 H 1.08999 * 109.58569 * 294.84442 * 15 14 12 44 44 H 0.96999 * 119.99443 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.58545 * 173.38996 * 25 16 15 46 46 H 1.08998 * 109.58505 * 293.82087 * 25 16 15 47 47 H 0.96696 * 114.00447 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0342 0.0915 -0.0006 6 7 4.2765 2.2967 -0.0002 7 6 3.6465 3.6194 0.0003 8 6 5.7370 2.1810 -0.0003 9 6 6.2377 2.1419 -1.4212 10 8 5.4521 2.2049 -2.3430 11 7 7.5586 2.0368 -1.6674 12 6 8.0449 1.9927 -3.0486 13 1 7.3254 1.4595 -3.6701 14 6 8.2147 3.4196 -3.5753 15 6 9.2003 4.1763 -2.6794 16 7 10.4512 3.4098 -2.5994 17 6 11.6505 3.9981 -2.9007 18 1 11.6883 4.8193 -3.6011 19 6 12.8176 3.5391 -2.3057 20 7 12.7548 2.7868 -1.2275 21 14 14.4773 3.9890 -3.0354 22 1 14.2761 4.8379 -4.2371 23 1 15.2740 4.7365 -2.0295 24 1 15.2013 2.7505 -3.4193 25 6 10.3908 1.9998 -2.1906 26 6 9.3920 1.2678 -3.0920 27 1 9.7663 1.2563 -4.1157 28 8 9.2268 -0.0740 -2.6288 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.4902 3.9477 -1.0273 35 1 2.6868 3.5645 0.5141 36 1 4.2937 4.3299 0.5143 37 1 6.0289 1.2649 0.5132 38 1 6.1694 3.0394 0.5139 39 1 8.1869 1.9860 -0.9302 40 1 8.5999 3.3877 -4.5944 41 1 7.2504 3.9277 -3.5666 42 1 9.4007 5.1594 -3.1055 43 1 8.7757 4.2878 -1.6817 44 1 13.5704 2.4658 -0.8120 45 1 11.3768 1.5468 -2.2943 46 1 10.0633 1.9339 -1.1531 47 1 10.0424 -0.5934 -2.6289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099864917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:20 Heat of formation + Delta-G solvation = -126.052583 kcal Electronic energy + Delta-G solvation = -29563.873803 eV Core-core repulsion = 25362.412629 eV Total energy + Delta-G solvation = -4201.461174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.40914 -39.45089 -37.99224 -37.41313 -35.49856 -35.26467 -34.03313 -32.06906 -30.49512 -29.51183 -28.90213 -27.98589 -26.66122 -25.67432 -25.06731 -22.42124 -21.85995 -21.02356 -19.50663 -18.72597 -17.60734 -17.44974 -16.99981 -16.82253 -16.55141 -16.39009 -15.86545 -15.17490 -15.01588 -14.95232 -14.77332 -14.24988 -14.04413 -13.73481 -13.55997 -13.41725 -13.18815 -13.06119 -12.78579 -12.72019 -12.46793 -12.30136 -11.90560 -11.82845 -11.71258 -11.62273 -11.08939 -11.03931 -10.87384 -10.44092 -10.22652 -10.09924 -10.03063 -9.93106 -9.85769 -9.61012 -9.33180 -8.74251 -8.67906 -8.53798 -6.80909 -5.92054 -3.35854 2.35832 2.56765 2.93116 3.29258 3.38310 3.40067 3.52115 3.74291 4.35395 4.37746 4.61432 4.65499 4.84802 4.87034 4.98950 5.01691 5.05443 5.08441 5.23153 5.25018 5.35212 5.38021 5.38952 5.47142 5.50762 5.71788 5.82616 5.92847 6.03096 6.10862 6.24051 6.42330 6.44429 6.67012 6.67875 6.78608 6.96669 7.03926 7.13717 7.39415 7.68355 7.87766 8.05166 8.12211 8.32171 8.55726 9.06596 9.69362 10.25134 11.15982 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.027556 B = 0.002573 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.855552 B =10879.684050 C =11127.715561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.519 3.481 5 O -0.513 6.513 6 N -0.599 5.599 7 C 0.077 3.923 8 C 0.097 3.903 9 C 0.498 3.502 10 O -0.546 6.546 11 N -0.703 5.703 12 C 0.166 3.834 13 H 0.077 0.923 14 C -0.143 4.143 15 C 0.147 3.853 16 N -0.588 5.588 17 C -0.254 4.254 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.146 3.854 26 C 0.066 3.934 27 H 0.061 0.939 28 O -0.571 6.571 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.404 0.596 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.020 0.980 44 H 0.255 0.745 45 H 0.092 0.908 46 H 0.025 0.975 47 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.312 0.834 4.124 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.306 3.694 5 O -0.387 6.387 6 N -0.334 5.334 7 C -0.066 4.066 8 C -0.029 4.029 9 C 0.283 3.717 10 O -0.423 6.423 11 N -0.355 5.355 12 C 0.062 3.938 13 H 0.095 0.905 14 C -0.183 4.183 15 C 0.021 3.979 16 N -0.312 5.312 17 C -0.384 4.384 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.020 3.980 26 C 0.005 3.995 27 H 0.079 0.921 28 O -0.376 6.376 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.240 0.760 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.043 0.957 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -19.973 0.246 3.621 20.300 hybrid contribution 1.656 0.401 -0.099 1.706 sum -18.318 0.647 3.522 18.664 Atomic orbital electron populations 1.22837 0.80402 1.03340 1.00059 1.88029 1.19752 1.25298 1.95394 1.22249 0.91559 0.86895 1.02456 1.20187 0.88716 0.84105 0.76394 1.90748 1.74363 1.26149 1.47399 1.47262 1.05347 1.06544 1.74205 1.21900 0.98415 0.83539 1.02733 1.21345 0.80503 1.05839 0.95248 1.20957 0.82719 0.76402 0.91650 1.90645 1.55425 1.50264 1.46009 1.45946 1.06858 1.73223 1.09442 1.20783 0.94506 0.95863 0.82682 0.90516 1.22392 1.00052 0.95210 1.00686 1.20907 0.86868 0.94305 0.95867 1.43972 1.01928 1.05623 1.79714 1.19234 0.83777 1.16241 1.19133 0.91415 1.25070 0.98479 1.00435 0.95601 1.70019 1.27121 1.38923 1.18548 0.86214 0.84032 0.77808 0.78663 1.20202 1.21658 1.21503 1.21394 0.98142 0.84756 0.93741 1.22929 0.95770 0.81835 0.98922 0.92140 1.86443 1.37520 1.24209 1.89413 0.93867 0.93762 0.89071 0.90278 0.90012 0.91738 0.91043 0.90473 0.86802 0.87200 0.75964 0.91230 0.91871 0.92539 0.96253 0.93546 0.88989 0.95681 0.77768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.37 -4.56 10.24 -55.14 -0.56 -5.12 16 3 C 0.05 0.49 4.97 36.01 0.18 0.67 16 4 C 0.52 7.38 7.75 -10.98 -0.09 7.29 16 5 O -0.51 -9.77 16.08 -14.35 -0.23 -10.00 16 6 N -0.60 -7.16 2.36 -182.95 -0.43 -7.59 16 7 C 0.08 0.58 10.29 59.85 0.62 1.20 16 8 C 0.10 1.23 5.93 -5.19 -0.03 1.20 16 9 C 0.50 8.24 7.86 -10.98 -0.09 8.15 16 10 O -0.55 -10.69 16.09 5.56 0.09 -10.60 16 11 N -0.70 -11.84 4.15 -53.76 -0.22 -12.06 16 12 C 0.17 3.04 2.47 -67.89 -0.17 2.87 16 13 H 0.08 1.51 7.57 -51.93 -0.39 1.12 16 14 C -0.14 -2.53 5.77 -26.61 -0.15 -2.69 16 15 C 0.15 2.90 6.26 -3.71 -0.02 2.88 16 16 N -0.59 -13.65 2.99 -172.34 -0.52 -14.17 16 17 C -0.25 -6.58 9.58 -15.06 -0.14 -6.72 16 18 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 19 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -24.60 11.20 55.49 0.62 -23.98 16 21 Si 0.90 20.76 29.59 -169.99 -5.03 15.73 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.15 3.19 4.63 -3.72 -0.02 3.17 16 26 C 0.07 1.25 3.36 -26.63 -0.09 1.16 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 O -0.57 -10.18 13.21 -35.23 -0.47 -10.65 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.53 7.40 -51.93 -0.38 0.14 16 33 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.34 6.44 -51.93 -0.33 0.00 16 36 H 0.08 0.46 7.89 -51.93 -0.41 0.05 16 37 H 0.11 1.51 7.42 -51.93 -0.39 1.12 16 38 H 0.11 1.03 7.89 -51.93 -0.41 0.62 16 39 H 0.40 6.65 6.87 -40.82 -0.28 6.37 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 43 H 0.02 0.38 7.74 -51.93 -0.40 -0.02 16 44 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 45 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 46 H 0.03 0.57 6.64 -51.93 -0.34 0.22 16 47 H 0.38 5.38 9.08 45.56 0.41 5.79 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -35.92 382.26 -6.55 -42.47 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.59 Total: 9.71 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: 1.02 Total: 20.51 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.55 Total: -57.81 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.17 Total: -36.37 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.92 -6.55 -42.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099864917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.583 kcal (2) G-P(sol) polarization free energy of solvation -35.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds