Wall clock time and date at job start Tue Mar 31 2020 04:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00022 * 2 1 4 4 C 1.50700 * 109.47003 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00388 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00103 * 180.02562 * 4 3 2 7 7 C 1.46509 * 119.99804 * 359.97438 * 6 4 3 8 8 C 1.46499 * 120.00256 * 179.97438 * 6 4 3 9 9 C 1.50703 * 109.46932 * 89.99796 * 8 6 4 10 10 O 1.21278 * 120.00379 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99682 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99962 * 179.72650 * 11 9 8 13 13 H 1.09005 * 109.45869 * 325.27729 * 12 11 9 14 14 C 1.53043 * 109.46110 * 85.24615 * 12 11 9 15 15 C 1.53191 * 109.30960 * 58.65918 * 14 12 11 16 16 N 1.46921 * 108.77928 * 54.63241 * 15 14 12 17 17 C 1.36939 * 120.62958 * 126.36282 * 16 15 14 18 18 H 1.08000 * 120.00584 * 331.84463 * 17 16 15 19 19 C 1.38814 * 119.99555 * 151.83203 * 17 16 15 20 20 N 1.31618 * 120.00174 * 343.09002 * 19 17 16 21 21 Si 1.86806 * 119.99588 * 163.08398 * 19 17 16 22 22 H 1.48502 * 109.47244 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46995 * 120.00487 * 21 19 17 24 24 H 1.48500 * 109.46954 * 240.00365 * 21 19 17 25 25 C 1.46924 * 118.74054 * 306.39262 * 16 15 14 26 26 C 1.53037 * 109.46191 * 205.30330 * 12 11 9 27 27 H 1.09005 * 109.50168 * 181.39428 * 26 12 11 28 28 O 1.42903 * 109.49976 * 61.29501 * 26 12 11 29 29 H 1.09001 * 109.46939 * 299.99906 * 1 2 3 30 30 H 1.09004 * 109.46990 * 59.99814 * 1 2 3 31 31 H 1.08996 * 109.47313 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47157 * 60.00130 * 3 2 1 33 33 H 1.09007 * 109.47208 * 299.99827 * 3 2 1 34 34 H 1.09001 * 109.46743 * 270.00202 * 7 6 4 35 35 H 1.08993 * 109.47099 * 30.00251 * 7 6 4 36 36 H 1.08998 * 109.46955 * 150.00290 * 7 6 4 37 37 H 1.09000 * 109.47053 * 330.00240 * 8 6 4 38 38 H 1.09001 * 109.46875 * 209.99788 * 8 6 4 39 39 H 0.96996 * 120.00130 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.49479 * 178.61070 * 14 12 11 41 41 H 1.09004 * 109.49920 * 298.67262 * 14 12 11 42 42 H 1.09005 * 109.58129 * 174.42314 * 15 14 12 43 43 H 1.08999 * 109.58569 * 294.84442 * 15 14 12 44 44 H 0.96999 * 119.99443 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.58545 * 173.38996 * 25 16 15 46 46 H 1.08998 * 109.58505 * 293.82087 * 25 16 15 47 47 H 0.96696 * 114.00447 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0342 0.0915 -0.0006 6 7 4.2765 2.2967 -0.0002 7 6 3.6465 3.6194 0.0003 8 6 5.7370 2.1810 -0.0003 9 6 6.2377 2.1419 -1.4212 10 8 5.4521 2.2049 -2.3430 11 7 7.5586 2.0368 -1.6674 12 6 8.0449 1.9927 -3.0486 13 1 7.3254 1.4595 -3.6701 14 6 8.2147 3.4196 -3.5753 15 6 9.2003 4.1763 -2.6794 16 7 10.4512 3.4098 -2.5994 17 6 11.6505 3.9981 -2.9007 18 1 11.6883 4.8193 -3.6011 19 6 12.8176 3.5391 -2.3057 20 7 12.7548 2.7868 -1.2275 21 14 14.4773 3.9890 -3.0354 22 1 14.2761 4.8379 -4.2371 23 1 15.2740 4.7365 -2.0295 24 1 15.2013 2.7505 -3.4193 25 6 10.3908 1.9998 -2.1906 26 6 9.3920 1.2678 -3.0920 27 1 9.7663 1.2563 -4.1157 28 8 9.2268 -0.0740 -2.6288 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.4902 3.9477 -1.0273 35 1 2.6868 3.5645 0.5141 36 1 4.2937 4.3299 0.5143 37 1 6.0289 1.2649 0.5132 38 1 6.1694 3.0394 0.5139 39 1 8.1869 1.9860 -0.9302 40 1 8.5999 3.3877 -4.5944 41 1 7.2504 3.9277 -3.5666 42 1 9.4007 5.1594 -3.1055 43 1 8.7757 4.2878 -1.6817 44 1 13.5704 2.4658 -0.8120 45 1 11.3768 1.5468 -2.2943 46 1 10.0633 1.9339 -1.1531 47 1 10.0424 -0.5934 -2.6289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099864917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:19 Heat of formation + Delta-G solvation = -154.532751 kcal Electronic energy + Delta-G solvation = -29565.108795 eV Core-core repulsion = 25362.412629 eV Total energy + Delta-G solvation = -4202.696167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.56805 -40.72479 -39.30353 -38.37713 -36.87663 -36.53174 -35.62220 -33.74575 -31.84208 -30.85306 -30.38716 -28.84408 -27.43586 -27.12088 -26.17200 -24.06233 -23.49738 -22.34839 -20.51465 -20.28155 -18.90208 -18.52053 -18.46230 -18.10691 -17.75128 -17.25273 -16.92902 -16.82048 -16.26879 -16.22854 -15.93004 -15.60155 -15.48659 -15.23184 -14.97971 -14.68644 -14.42954 -14.01086 -13.90117 -13.84990 -13.54398 -13.38244 -13.24650 -13.17617 -12.90014 -12.81180 -12.68631 -12.68122 -12.33372 -12.12985 -11.97683 -11.82150 -11.30601 -11.16642 -10.95297 -10.91720 -10.76707 -10.58752 -10.02099 -9.77341 -8.70029 -7.89489 -5.35149 1.36931 1.46655 1.50811 1.59465 1.63331 1.68014 2.33875 2.50217 2.97821 3.13291 3.27620 3.55009 3.66541 3.76867 3.96983 4.05249 4.12328 4.17623 4.22603 4.26122 4.32926 4.35597 4.37972 4.45838 4.50375 4.57469 4.70206 4.71982 4.86641 4.89904 4.94958 4.95856 5.09385 5.16432 5.26611 5.32629 5.54719 5.59413 5.66411 5.99511 6.28931 6.35690 6.54582 6.80741 7.05187 7.12713 7.23563 7.80821 8.32489 9.16237 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.027556 B = 0.002573 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.855552 B =10879.684050 C =11127.715561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.052 3.948 4 C 0.505 3.495 5 O -0.577 6.577 6 N -0.596 5.596 7 C 0.069 3.931 8 C 0.098 3.902 9 C 0.496 3.504 10 O -0.578 6.578 11 N -0.702 5.702 12 C 0.169 3.831 13 H 0.063 0.937 14 C -0.128 4.128 15 C 0.148 3.852 16 N -0.603 5.603 17 C -0.262 4.262 18 H 0.068 0.932 19 C -0.044 4.044 20 N -0.928 5.928 21 Si 0.962 3.038 22 H -0.269 1.269 23 H -0.294 1.294 24 H -0.291 1.291 25 C 0.160 3.840 26 C 0.081 3.919 27 H 0.059 0.941 28 O -0.576 6.576 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.407 0.593 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.025 0.975 44 H 0.251 0.749 45 H 0.063 0.937 46 H 0.015 0.985 47 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.800 2.375 4.454 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.027 4.027 4 C 0.294 3.706 5 O -0.455 6.455 6 N -0.329 5.329 7 C -0.072 4.072 8 C -0.028 4.028 9 C 0.282 3.718 10 O -0.458 6.458 11 N -0.353 5.353 12 C 0.064 3.936 13 H 0.081 0.919 14 C -0.168 4.168 15 C 0.023 3.977 16 N -0.327 5.327 17 C -0.392 4.392 18 H 0.085 0.915 19 C -0.240 4.240 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.194 1.194 23 H -0.221 1.221 24 H -0.218 1.218 25 C 0.033 3.967 26 C 0.020 3.980 27 H 0.077 0.923 28 O -0.383 6.383 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.138 0.862 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.167 0.833 39 H 0.243 0.757 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.033 0.967 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -21.489 1.834 3.950 21.926 hybrid contribution 2.064 -0.062 -0.202 2.075 sum -19.425 1.772 3.748 19.862 Atomic orbital electron populations 1.23049 0.78081 1.04197 1.01782 1.87972 1.22393 1.26884 1.95790 1.22390 0.88497 0.86718 1.05130 1.21111 0.90696 0.83648 0.75120 1.90707 1.75742 1.28550 1.50536 1.47480 1.04934 1.07812 1.72677 1.22223 1.00343 0.81559 1.03072 1.21416 0.81590 1.07159 0.92669 1.21649 0.82071 0.75126 0.92973 1.90623 1.56019 1.51737 1.47433 1.45942 1.07311 1.73234 1.08850 1.20665 0.93591 0.95892 0.83478 0.91863 1.22230 0.99848 0.94553 1.00180 1.20976 0.85877 0.94279 0.96549 1.44170 1.02378 1.06410 1.79773 1.19494 0.84964 1.16036 1.18691 0.91478 1.25714 1.01268 1.00969 0.96062 1.70139 1.27452 1.40155 1.19648 0.85288 0.80360 0.77266 0.77972 1.19351 1.22086 1.21795 1.21168 0.97284 0.84479 0.93772 1.22648 0.95296 0.82047 0.97963 0.92275 1.86425 1.38804 1.23783 1.89289 0.91581 0.92476 0.88841 0.86202 0.88172 0.92556 0.87650 0.88369 0.87645 0.83334 0.75694 0.91049 0.90822 0.92337 0.95710 0.93994 0.91831 0.96702 0.76009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -9.83 10.24 -129.94 -1.33 -11.16 16 3 C 0.05 0.94 4.97 71.24 0.35 1.29 16 4 C 0.51 13.99 7.75 87.66 0.68 14.66 16 5 O -0.58 -22.55 16.08 16.01 0.26 -22.29 16 6 N -0.60 -13.21 2.36 -851.11 -2.01 -15.22 16 7 C 0.07 0.82 10.29 127.77 1.31 2.14 16 8 C 0.10 2.37 5.93 85.63 0.51 2.88 16 9 C 0.50 16.05 7.86 87.66 0.69 16.74 16 10 O -0.58 -22.40 16.09 -3.02 -0.05 -22.45 16 11 N -0.70 -23.26 4.15 -442.40 -1.84 -25.10 16 12 C 0.17 6.08 2.47 45.02 0.11 6.20 16 13 H 0.06 2.49 7.57 -2.38 -0.02 2.47 16 14 C -0.13 -4.38 5.77 30.67 0.18 -4.20 16 15 C 0.15 5.70 6.26 86.36 0.54 6.24 16 16 N -0.60 -27.78 2.99 -699.16 -2.09 -29.87 16 17 C -0.26 -13.45 9.58 84.03 0.81 -12.65 16 18 H 0.07 3.40 7.88 -2.91 -0.02 3.37 16 19 C -0.04 -2.31 4.92 84.86 0.42 -1.89 16 20 N -0.93 -51.12 11.20 21.65 0.24 -50.87 16 21 Si 0.96 42.68 29.59 68.60 2.03 44.71 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 25 C 0.16 6.98 4.63 86.35 0.40 7.38 16 26 C 0.08 3.05 3.36 30.66 0.10 3.15 16 27 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 28 O -0.58 -20.41 13.21 -148.98 -1.97 -22.38 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.12 1.13 7.40 -2.39 -0.02 1.12 16 33 H 0.10 1.42 8.11 -2.38 -0.02 1.40 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 0.53 6.44 -2.39 -0.02 0.52 16 36 H 0.10 0.78 7.89 -2.39 -0.02 0.76 16 37 H 0.11 2.79 7.42 -2.39 -0.02 2.77 16 38 H 0.15 2.37 7.89 -2.39 -0.02 2.35 16 39 H 0.41 13.20 6.87 -92.71 -0.64 12.56 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 42 H 0.06 2.21 7.93 -2.38 -0.02 2.19 16 43 H 0.02 0.94 7.74 -2.39 -0.02 0.92 16 44 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 45 H 0.06 3.16 6.06 -2.39 -0.01 3.15 16 46 H 0.02 0.68 6.64 -2.39 -0.02 0.67 16 47 H 0.39 11.08 9.08 -74.06 -0.67 10.41 16 Total: -1.00 -79.56 382.26 0.28 -79.28 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.31 Total: 31.84 kcal Atomic # 6 Polarization: 36.16 SS G_CDS: 7.35 Total: 43.51 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -5.70 Total: -121.07 kcal Atomic # 8 Polarization: -75.20 SS G_CDS: -3.09 Total: -78.29 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -79.56 0.28 -79.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099864917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.250 kcal (2) G-P(sol) polarization free energy of solvation -79.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds