Wall clock time and date at job start Tue Mar 31 2020 05:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46897 * 109.47189 * 2 1 4 4 C 1.46899 * 111.00332 * 66.04738 * 3 2 1 5 5 C 1.53002 * 109.47161 * 63.19451 * 4 3 2 6 6 C 1.46901 * 111.00342 * 190.00127 * 3 2 1 7 7 C 1.52998 * 109.47613 * 163.35038 * 6 3 2 8 8 H 1.09003 * 109.46715 * 306.05375 * 7 6 3 9 9 F 1.39894 * 109.47233 * 66.05188 * 7 6 3 10 10 C 1.50703 * 109.47271 * 186.05694 * 7 6 3 11 11 O 1.21280 * 119.99950 * 314.99637 * 10 7 6 12 12 N 1.34777 * 119.99746 * 134.99619 * 10 7 6 13 13 C 1.48125 * 127.03023 * 179.70775 * 12 10 7 14 14 C 1.54591 * 103.42279 * 219.28526 * 13 12 10 15 15 H 1.09003 * 110.57050 * 81.17124 * 14 13 12 16 16 C 1.52994 * 110.99042 * 204.37151 * 14 13 12 17 17 N 1.46497 * 109.47290 * 288.65467 * 16 14 13 18 18 C 1.36938 * 120.00071 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00149 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00106 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00161 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99976 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47223 * 90.00230 * 22 20 18 24 24 H 1.48504 * 109.46755 * 210.00403 * 22 20 18 25 25 H 1.48500 * 109.46957 * 330.00059 * 22 20 18 26 26 C 1.54621 * 102.91312 * 322.87136 * 14 13 12 27 27 H 1.09005 * 110.32080 * 262.80471 * 26 14 13 28 28 C 1.52995 * 110.41451 * 140.63292 * 26 14 13 29 29 C 1.47479 * 127.03926 * 0.02562 * 12 10 7 30 30 H 1.09001 * 109.47154 * 59.99587 * 1 2 3 31 31 H 1.08998 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46740 * 299.99987 * 1 2 3 33 33 H 1.08999 * 109.47264 * 119.99880 * 2 1 3 34 34 H 1.08998 * 109.47610 * 240.00113 * 2 1 3 35 35 H 1.08994 * 109.47518 * 183.19288 * 4 3 2 36 36 H 1.08997 * 109.47121 * 303.19645 * 4 3 2 37 37 H 1.09000 * 109.47400 * 64.46959 * 5 4 3 38 38 H 1.09001 * 109.47596 * 184.47277 * 5 4 3 39 39 H 1.08999 * 109.47012 * 304.47200 * 5 4 3 40 40 H 1.09002 * 109.47238 * 283.34881 * 6 3 2 41 41 H 1.08999 * 109.46941 * 43.34122 * 6 3 2 42 42 H 1.08997 * 110.65850 * 337.77455 * 13 12 10 43 43 H 1.08997 * 110.66134 * 100.88531 * 13 12 10 44 44 H 1.08997 * 109.47054 * 48.65306 * 16 14 13 45 45 H 1.09000 * 109.47135 * 168.65338 * 16 14 13 46 46 H 0.96995 * 120.00340 * 0.02562 * 17 16 14 47 47 H 0.97006 * 120.00261 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.47224 * 302.87475 * 28 26 14 49 49 H 1.08999 * 109.46969 * 62.87122 * 28 26 14 50 50 H 1.08996 * 109.47027 * 182.86960 * 28 26 14 51 51 H 1.09000 * 109.91404 * 273.88046 * 29 12 10 52 52 H 1.08998 * 109.91052 * 35.15121 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0670 1.2533 5 6 2.3666 1.3705 2.4242 6 6 3.4685 1.4312 -0.2382 7 6 3.8741 2.8501 -0.6419 8 1 3.2691 3.1737 -1.4889 9 9 3.6695 3.7181 0.4360 10 6 5.3303 2.8652 -1.0297 11 8 6.1470 2.2905 -0.3416 12 7 5.7248 3.5174 -2.1412 13 6 7.1063 3.6374 -2.6620 14 6 7.1722 5.0954 -3.1719 15 1 7.3560 5.7821 -2.3456 16 6 8.2451 5.2505 -4.2515 17 7 9.5721 5.1530 -3.6387 18 6 10.6946 5.2623 -4.4154 19 1 10.6016 5.4200 -5.4798 20 6 11.9521 5.1693 -3.8349 21 7 13.0310 5.2739 -4.5814 22 14 12.1131 4.8958 -1.9940 23 1 12.1481 3.4385 -1.7113 24 1 13.3675 5.5247 -1.5080 25 1 10.9516 5.5071 -1.2993 26 6 5.7618 5.3179 -3.7654 27 1 5.7762 5.1621 -4.8442 28 6 5.2619 6.7266 -3.4394 29 6 4.8705 4.2629 -3.0842 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.9945 3.1064 1.2040 36 1 0.5906 2.0297 1.3984 37 1 3.4464 1.4767 2.3200 38 1 2.0454 1.8260 3.3610 39 1 2.1040 0.3126 2.4259 40 1 3.9957 1.1480 0.6729 41 1 3.7274 0.7377 -1.0382 42 1 7.8329 3.4760 -1.8657 43 1 7.2705 2.9378 -3.4815 44 1 8.1292 4.4617 -4.9947 45 1 8.1379 6.2223 -4.7333 46 1 9.6558 5.0102 -2.6830 47 1 13.9098 5.2093 -4.1757 48 1 5.2644 6.8722 -2.3592 49 1 5.9170 7.4619 -3.9066 50 1 4.2480 6.8495 -3.8203 51 1 4.4620 3.5833 -3.8321 52 1 4.0613 4.7538 -2.5435 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106198501.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:36 Heat of formation + Delta-G solvation = -62.623304 kcal Electronic energy + Delta-G solvation = -29525.154157 eV Core-core repulsion = 25474.649368 eV Total energy + Delta-G solvation = -4050.504790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.222 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.22172 -40.24209 -38.76515 -38.01134 -34.91236 -33.05419 -32.27472 -31.60821 -31.45864 -29.76704 -28.35652 -26.58790 -25.88980 -24.56783 -23.56903 -22.65247 -21.20199 -20.32629 -20.13556 -19.55245 -18.12444 -17.48480 -17.16673 -16.32095 -16.20640 -15.88665 -15.57019 -15.33343 -14.64500 -14.48565 -14.43707 -14.11095 -13.86454 -13.76676 -13.47816 -13.32676 -13.27294 -12.89611 -12.74856 -12.53384 -12.50999 -12.45966 -12.31831 -12.17763 -11.98279 -11.77018 -11.55487 -11.48978 -11.43600 -11.23020 -10.95431 -10.82408 -10.68037 -10.56179 -10.41642 -10.12304 -9.87043 -9.59308 -8.92134 -8.83863 -8.73262 -7.25210 -5.77530 -3.13587 2.22371 2.55043 3.39625 3.43421 3.46904 3.47651 4.04570 4.20243 4.37389 4.42680 4.45597 4.58046 4.59740 4.64577 4.75315 4.80560 4.85226 4.95911 5.07318 5.09693 5.20581 5.21039 5.28137 5.33077 5.35926 5.38771 5.42477 5.52355 5.54655 5.60504 5.64795 5.65482 5.66629 5.71012 5.79493 5.86978 5.92087 5.99346 5.99985 6.08020 6.12109 6.30622 6.55724 6.58378 6.63638 6.68405 7.29817 7.82630 7.97432 8.41202 9.19784 9.92441 10.11309 11.40636 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.002601 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.383238 B =10760.871916 C =11492.851622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 N -0.534 5.534 4 C 0.030 3.970 5 C -0.194 4.194 6 C 0.033 3.967 7 C 0.093 3.907 8 H 0.108 0.892 9 F -0.186 7.186 10 C 0.510 3.490 11 O -0.522 6.522 12 N -0.612 5.612 13 C 0.110 3.890 14 C -0.107 4.107 15 H 0.084 0.916 16 C 0.170 3.830 17 N -0.757 5.757 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.098 4.098 27 H 0.092 0.908 28 C -0.143 4.143 29 C 0.099 3.901 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.031 0.969 45 H 0.033 0.967 46 H 0.361 0.639 47 H 0.260 0.740 48 H 0.055 0.945 49 H 0.065 0.935 50 H 0.056 0.944 51 H 0.074 0.926 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.357 -6.570 7.671 31.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 N -0.258 5.258 4 C -0.098 4.098 5 C -0.252 4.252 6 C -0.096 4.096 7 C 0.053 3.947 8 H 0.126 0.874 9 F -0.167 7.167 10 C 0.295 3.705 11 O -0.398 6.398 12 N -0.346 5.346 13 C -0.011 4.011 14 C -0.127 4.127 15 H 0.102 0.898 16 C 0.042 3.958 17 N -0.402 5.402 18 C -0.375 4.375 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.118 4.118 27 H 0.111 0.889 28 C -0.200 4.200 29 C -0.024 4.024 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.194 0.806 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.075 0.925 51 H 0.092 0.908 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -29.046 -6.647 7.561 30.741 hybrid contribution 0.704 -0.522 2.007 2.190 sum -28.342 -7.170 9.569 30.761 Atomic orbital electron populations 1.21785 0.94577 1.01598 1.02569 1.22157 0.96305 0.88642 1.01204 1.62245 1.12104 1.16453 1.34995 1.22544 1.00560 1.00015 0.86660 1.22397 1.01936 1.01093 0.99782 1.22524 0.89337 0.94515 1.03239 1.21554 0.93745 0.90623 0.88729 0.87445 1.92794 1.95179 1.71381 1.57354 1.20465 0.90560 0.79347 0.80143 1.90761 1.54392 1.43675 1.50931 1.48910 1.10730 1.51121 1.23830 1.22607 0.82170 0.97063 0.99279 1.22590 0.94544 0.95855 0.99730 0.89800 1.20602 0.83506 0.98916 0.92753 1.42733 1.01543 1.89374 1.06591 1.19028 0.83394 1.42160 0.92927 0.89159 1.24666 0.95297 1.01814 0.97239 1.69700 0.97143 1.56942 1.34318 0.86585 0.77055 0.78177 0.86938 1.20950 1.21676 1.20339 1.22075 0.94148 0.94758 1.00789 0.88948 1.21847 1.00885 0.95563 1.01732 1.22372 0.93929 0.94065 0.92054 0.91777 0.92264 0.92580 0.94096 0.90713 0.88698 0.90461 0.92058 0.91902 0.92565 0.91304 0.88842 0.89629 0.89988 0.95133 0.94930 0.80632 0.93035 0.92622 0.91643 0.92498 0.90824 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.84 37.16 0.37 -0.48 16 2 C 0.04 0.31 5.48 -3.83 -0.02 0.29 16 3 N -0.53 -4.42 4.66 -234.64 -1.09 -5.51 16 4 C 0.03 0.24 5.56 -3.82 -0.02 0.22 16 5 C -0.19 -1.57 9.26 37.16 0.34 -1.23 16 6 C 0.03 0.31 4.40 -3.82 -0.02 0.30 16 7 C 0.09 0.98 3.65 -27.88 -0.10 0.88 16 8 H 0.11 0.89 6.57 -51.93 -0.34 0.55 16 9 F -0.19 -2.23 14.27 2.25 0.03 -2.19 16 10 C 0.51 7.04 7.23 -10.98 -0.08 6.96 16 11 O -0.52 -9.30 16.83 5.56 0.09 -9.21 16 12 N -0.61 -7.80 3.29 -169.99 -0.56 -8.36 16 13 C 0.11 1.64 6.44 -2.31 -0.01 1.62 16 14 C -0.11 -1.53 2.60 -88.93 -0.23 -1.77 16 15 H 0.08 1.30 7.86 -51.93 -0.41 0.89 16 16 C 0.17 3.05 5.58 -4.05 -0.02 3.03 16 17 N -0.76 -17.67 5.33 -59.91 -0.32 -17.99 16 18 C -0.25 -6.90 10.47 -15.06 -0.16 -7.06 16 19 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 22 Si 0.88 22.56 27.73 -169.99 -4.71 17.85 16 23 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.28 -6.73 6.52 56.52 0.37 -6.37 16 26 C -0.10 -1.01 3.17 -89.25 -0.28 -1.30 16 27 H 0.09 0.88 7.85 -51.93 -0.41 0.47 16 28 C -0.14 -1.33 8.90 37.15 0.33 -1.00 16 29 C 0.10 0.92 6.02 -2.99 -0.02 0.90 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.32 6.49 -51.93 -0.34 -0.02 16 33 H 0.04 0.29 6.02 -51.93 -0.31 -0.02 16 34 H 0.07 0.49 7.85 -51.93 -0.41 0.08 16 35 H 0.09 0.87 5.52 -51.93 -0.29 0.58 16 36 H 0.08 0.54 6.33 -51.93 -0.33 0.21 16 37 H 0.06 0.60 6.40 -51.93 -0.33 0.27 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.42 6.15 -51.93 -0.32 0.10 16 40 H 0.07 0.76 5.78 -51.93 -0.30 0.46 16 41 H 0.09 0.83 7.79 -51.93 -0.40 0.43 16 42 H 0.09 1.49 7.85 -51.93 -0.41 1.08 16 43 H 0.08 1.19 7.94 -51.93 -0.41 0.78 16 44 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.36 8.41 5.53 -40.82 -0.23 8.19 16 47 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.08 0.60 6.79 -51.93 -0.35 0.24 16 LS Contribution 399.16 15.07 6.02 6.02 Total: -1.00 -33.46 399.16 -8.77 -42.22 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.97 Total: 4.37 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.02 Total: 1.45 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -1.20 Total: -60.50 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.03 Total: -2.19 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.46 -8.77 -42.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106198501.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.401 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds