Wall clock time and date at job start Tue Mar 31 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.91991 * 2 1 4 4 C 1.54912 * 111.00806 * 236.09102 * 2 1 3 5 5 N 1.47426 * 104.83625 * 204.92068 * 4 2 1 6 6 C 1.34772 * 125.64930 * 204.09564 * 5 4 2 7 7 O 1.21282 * 119.99982 * 180.02562 * 6 5 4 8 8 C 1.50697 * 119.99942 * 0.03661 * 6 5 4 9 9 C 1.53000 * 109.47215 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47343 * 180.02562 * 9 8 6 11 11 F 1.39896 * 109.47270 * 180.02562 * 10 9 8 12 12 C 1.47029 * 108.69899 * 24.12685 * 5 4 2 13 13 C 1.54316 * 107.27405 * 358.94318 * 12 5 4 14 14 H 1.08997 * 110.72018 * 96.34778 * 13 12 5 15 15 C 1.52997 * 110.72270 * 219.44474 * 13 12 5 16 16 N 1.46910 * 109.46942 * 293.54951 * 15 13 12 17 17 C 1.46892 * 110.99936 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47256 * 179.97438 * 17 16 15 19 19 O 1.21293 * 119.99490 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00426 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00363 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00037 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00220 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99901 * 179.72435 * 23 21 20 25 25 Si 1.86800 * 120.00194 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72227 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72075 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72111 * 25 23 21 29 29 H 1.08997 * 109.47552 * 296.10576 * 1 2 3 30 30 H 1.09001 * 109.46589 * 56.10511 * 1 2 3 31 31 H 1.09001 * 109.47338 * 176.10133 * 1 2 3 32 32 H 1.08994 * 110.36635 * 86.07778 * 4 2 1 33 33 H 1.09005 * 110.45594 * 323.80934 * 4 2 1 34 34 H 1.09004 * 109.47058 * 300.00150 * 8 6 5 35 35 H 1.09000 * 109.47062 * 60.00210 * 8 6 5 36 36 H 1.09004 * 109.47009 * 299.99909 * 9 8 6 37 37 H 1.09000 * 109.47155 * 59.99996 * 9 8 6 38 38 H 1.09004 * 109.46840 * 299.99824 * 10 9 8 39 39 H 1.09000 * 109.47152 * 59.99806 * 10 9 8 40 40 H 1.08996 * 109.87810 * 239.52232 * 12 5 4 41 41 H 1.09002 * 110.00757 * 118.43616 * 12 5 4 42 42 H 1.08996 * 109.47845 * 173.54704 * 15 13 12 43 43 H 1.09004 * 109.47220 * 53.54320 * 15 13 12 44 44 H 1.00899 * 110.99413 * 303.94688 * 16 15 13 45 45 H 1.09000 * 109.47778 * 59.99479 * 17 16 15 46 46 H 1.09007 * 109.47317 * 299.99776 * 17 16 15 47 47 H 0.97000 * 120.00112 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99993 * 180.27541 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8068 -1.2002 5 7 3.4272 -1.2433 -0.7731 6 6 4.4477 -1.5618 -1.5937 7 8 5.5128 -1.9102 -1.1298 8 6 4.2655 -1.4849 -3.0877 9 6 5.5656 -1.8957 -3.7819 10 6 5.3809 -1.8170 -5.2986 11 9 6.5694 -2.1931 -5.9333 12 6 3.4673 -1.2742 0.6963 13 6 2.0861 -0.8079 1.2024 14 1 1.4478 -1.6631 1.4241 15 6 2.2348 0.0878 2.4338 16 7 2.7628 -0.7031 3.5536 17 6 2.9197 0.1261 4.7559 18 6 3.4615 -0.7176 5.8809 19 8 3.6936 -1.8942 5.6990 20 7 3.6871 -0.1652 7.0893 21 6 4.1795 -0.9329 8.1129 22 1 4.3870 -1.9803 7.9508 23 6 4.4127 -0.3632 9.3586 24 7 4.8795 -1.1004 10.3412 25 14 4.0546 1.4486 9.6389 26 1 5.2681 2.2466 9.3294 27 1 2.9419 1.8760 8.7533 28 1 3.6691 1.6634 11.0568 29 1 -0.3634 0.4522 0.9228 30 1 -0.3632 0.5731 -0.8531 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1561 -0.1723 -2.0836 33 1 1.4524 -1.6705 -1.4042 34 1 3.4636 -2.1580 -3.3910 35 1 4.0092 -0.4638 -3.3703 36 1 6.3678 -1.2228 -3.4785 37 1 5.8215 -2.9168 -3.4992 38 1 4.5786 -2.4896 -5.6023 39 1 5.1252 -0.7957 -5.5810 40 1 4.2425 -0.5998 1.0601 41 1 3.6661 -2.2884 1.0427 42 1 1.2618 0.4971 2.7051 43 1 2.9222 0.9033 2.2091 44 1 2.1763 -1.5028 3.7396 45 1 1.9516 0.5362 5.0435 46 1 3.6121 0.9417 4.5470 47 1 3.5012 0.7756 7.2349 48 1 5.0385 -0.7036 11.2120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106539307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:44 Heat of formation + Delta-G solvation = -132.218695 kcal Electronic energy + Delta-G solvation = -27563.773614 eV Core-core repulsion = 23374.417847 eV Total energy + Delta-G solvation = -4189.355767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.96718 -40.49962 -38.67647 -38.20885 -35.50208 -34.40630 -33.92294 -33.13806 -31.67084 -30.76648 -28.31050 -26.89210 -26.65794 -24.94812 -23.49717 -22.41248 -21.67766 -20.52346 -19.51031 -19.34826 -18.33340 -17.33626 -17.03917 -16.70147 -16.16108 -16.03747 -15.69603 -15.54219 -15.12988 -14.89451 -14.60393 -14.49143 -14.22333 -13.94099 -13.89123 -13.37754 -13.16159 -13.04745 -12.90189 -12.66834 -12.57498 -12.27244 -12.24159 -12.00802 -11.89009 -11.83356 -11.71753 -11.45175 -11.21082 -11.08732 -11.07262 -10.96512 -10.85795 -10.59662 -10.05300 -9.97234 -9.57050 -8.86333 -8.59977 -8.20130 -8.15336 -6.30591 -3.82074 2.40610 2.67781 3.01700 3.06907 3.14799 3.73827 3.85015 3.99728 4.09290 4.10773 4.26583 4.30719 4.35965 4.50716 4.57600 4.74265 4.76075 4.88401 4.90534 4.94304 4.96477 5.06035 5.09288 5.18133 5.22631 5.24842 5.30370 5.44836 5.51011 5.51722 5.58495 5.63577 5.70816 5.78731 5.81534 5.81798 5.92579 5.95602 6.04783 6.11073 7.03745 7.26901 7.52911 7.58611 7.94358 8.15096 8.60129 8.95541 9.42813 9.83072 10.82569 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.001932 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.923874 B =14487.497627 C =15553.624972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.622 5.622 6 C 0.524 3.476 7 O -0.533 6.533 8 C -0.133 4.133 9 C -0.141 4.141 10 C 0.063 3.937 11 F -0.218 7.218 12 C 0.121 3.879 13 C -0.091 4.091 14 H 0.087 0.913 15 C 0.070 3.930 16 N -0.669 5.669 17 C 0.049 3.951 18 C 0.449 3.551 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.881 3.119 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.277 1.277 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.351 0.649 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.227 6.773 -29.780 32.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.020 4.020 5 N -0.357 5.357 6 C 0.312 3.688 7 O -0.409 6.409 8 C -0.173 4.173 9 C -0.179 4.179 10 C 0.008 3.992 11 F -0.199 7.199 12 C -0.001 4.001 13 C -0.111 4.111 14 H 0.105 0.895 15 C -0.060 4.060 16 N -0.301 5.301 17 C -0.084 4.084 18 C 0.235 3.765 19 O -0.445 6.445 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.202 1.202 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.092 0.908 44 H 0.171 0.829 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.651 5.787 -29.670 31.732 hybrid contribution -1.214 1.619 0.791 2.173 sum -10.865 7.406 -28.879 31.732 Atomic orbital electron populations 1.21716 0.93489 1.02352 1.02365 1.22393 0.96298 0.99520 0.93814 0.89403 1.22424 0.83525 0.98282 0.97757 1.48587 1.12218 1.67219 1.07683 1.20224 0.82834 0.77200 0.88495 1.90770 1.25805 1.46742 1.77619 1.21520 0.99790 1.04027 0.91995 1.21938 0.97857 1.04875 0.93239 1.21987 0.83714 1.01423 0.92098 1.92780 1.50184 1.93364 1.83548 1.21924 0.97409 1.02835 0.77919 1.22302 0.96082 0.98610 0.94092 0.89466 1.21958 0.98069 0.95709 0.90288 1.60047 1.55538 1.09761 1.04801 1.21693 0.99968 0.96247 0.90463 1.19709 0.84732 0.88750 0.83317 1.90573 1.55354 1.16433 1.82157 1.42206 1.59447 1.10896 1.10493 1.19436 1.39116 0.96677 0.88139 0.86278 1.25043 0.97409 0.98325 0.95426 1.69624 1.44070 1.35906 1.02527 0.86660 0.78868 0.85104 0.78658 1.19598 1.19581 1.20202 0.91848 0.92261 0.92182 0.90634 0.91080 0.88654 0.88675 0.89816 0.89788 0.90750 0.90760 0.90576 0.90781 0.94861 0.90818 0.82939 0.93781 0.89497 0.79712 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.31 37.16 0.35 -0.30 16 2 C -0.10 -0.60 3.09 -88.47 -0.27 -0.87 16 3 H 0.09 0.52 8.05 -51.93 -0.42 0.10 16 4 C 0.10 0.59 6.16 -2.53 -0.02 0.58 16 5 N -0.62 -5.99 3.33 -170.52 -0.57 -6.56 16 6 C 0.52 5.74 7.85 -10.99 -0.09 5.65 16 7 O -0.53 -8.48 16.31 5.56 0.09 -8.39 16 8 C -0.13 -0.81 4.71 -27.88 -0.13 -0.94 16 9 C -0.14 -1.04 4.96 -26.73 -0.13 -1.17 16 10 C 0.06 0.35 7.55 37.16 0.28 0.63 16 11 F -0.22 -2.01 17.36 2.25 0.04 -1.97 16 12 C 0.12 1.40 6.28 -3.06 -0.02 1.38 16 13 C -0.09 -0.80 2.60 -88.79 -0.23 -1.03 16 14 H 0.09 0.75 8.04 -51.93 -0.42 0.34 16 15 C 0.07 0.71 5.00 -3.82 -0.02 0.69 16 16 N -0.67 -9.74 5.94 -115.05 -0.68 -10.42 16 17 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 18 C 0.45 10.17 7.82 -10.99 -0.09 10.08 16 19 O -0.56 -15.19 15.78 5.55 0.09 -15.10 16 20 N -0.59 -14.10 5.09 -10.96 -0.06 -14.15 16 21 C -0.30 -8.69 10.16 -14.94 -0.15 -8.84 16 22 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.91 13.96 55.50 0.77 -25.13 16 25 Si 0.88 19.40 27.74 -169.99 -4.72 14.68 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.27 -5.39 6.51 56.52 0.37 -5.02 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.27 8.08 -51.93 -0.42 -0.15 16 32 H 0.08 0.28 7.48 -51.93 -0.39 -0.11 16 33 H 0.07 0.35 7.99 -51.93 -0.41 -0.07 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.36 7.85 -51.93 -0.41 -0.04 16 36 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.08 1.04 7.77 -51.93 -0.40 0.63 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 44 H 0.35 5.29 8.43 -39.29 -0.33 4.96 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.37 7.72 5.76 -40.82 -0.23 7.48 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 396.04 15.07 5.97 5.97 Total: -1.00 -36.37 396.04 -7.76 -44.14 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -8.06 Total: 9.31 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -0.65 Total: 7.64 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.53 Total: -56.27 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.18 Total: -23.49 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.72 Total: 14.68 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.37 -7.76 -44.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106539307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.081 kcal (2) G-P(sol) polarization free energy of solvation -36.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds