Wall clock time and date at job start Tue Mar 31 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.91991 * 2 1 4 4 C 1.54912 * 111.00806 * 236.09102 * 2 1 3 5 5 N 1.47426 * 104.83625 * 204.92068 * 4 2 1 6 6 C 1.34772 * 125.64930 * 204.09564 * 5 4 2 7 7 O 1.21282 * 119.99982 * 180.02562 * 6 5 4 8 8 C 1.50697 * 119.99942 * 0.03661 * 6 5 4 9 9 C 1.53000 * 109.47215 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47343 * 180.02562 * 9 8 6 11 11 F 1.39896 * 109.47270 * 180.02562 * 10 9 8 12 12 C 1.47029 * 108.69899 * 24.12685 * 5 4 2 13 13 C 1.54316 * 107.27405 * 358.94318 * 12 5 4 14 14 H 1.08997 * 110.72018 * 96.34778 * 13 12 5 15 15 C 1.52997 * 110.72270 * 219.44474 * 13 12 5 16 16 N 1.46910 * 109.46942 * 293.54951 * 15 13 12 17 17 C 1.46892 * 110.99936 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47256 * 179.97438 * 17 16 15 19 19 O 1.21293 * 119.99490 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00426 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00363 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00037 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00220 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99901 * 179.72435 * 23 21 20 25 25 Si 1.86800 * 120.00194 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72227 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72075 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72111 * 25 23 21 29 29 H 1.08997 * 109.47552 * 296.10576 * 1 2 3 30 30 H 1.09001 * 109.46589 * 56.10511 * 1 2 3 31 31 H 1.09001 * 109.47338 * 176.10133 * 1 2 3 32 32 H 1.08994 * 110.36635 * 86.07778 * 4 2 1 33 33 H 1.09005 * 110.45594 * 323.80934 * 4 2 1 34 34 H 1.09004 * 109.47058 * 300.00150 * 8 6 5 35 35 H 1.09000 * 109.47062 * 60.00210 * 8 6 5 36 36 H 1.09004 * 109.47009 * 299.99909 * 9 8 6 37 37 H 1.09000 * 109.47155 * 59.99996 * 9 8 6 38 38 H 1.09004 * 109.46840 * 299.99824 * 10 9 8 39 39 H 1.09000 * 109.47152 * 59.99806 * 10 9 8 40 40 H 1.08996 * 109.87810 * 239.52232 * 12 5 4 41 41 H 1.09002 * 110.00757 * 118.43616 * 12 5 4 42 42 H 1.08996 * 109.47845 * 173.54704 * 15 13 12 43 43 H 1.09004 * 109.47220 * 53.54320 * 15 13 12 44 44 H 1.00899 * 110.99413 * 303.94688 * 16 15 13 45 45 H 1.09000 * 109.47778 * 59.99479 * 17 16 15 46 46 H 1.09007 * 109.47317 * 299.99776 * 17 16 15 47 47 H 0.97000 * 120.00112 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99993 * 180.27541 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8068 -1.2002 5 7 3.4272 -1.2433 -0.7731 6 6 4.4477 -1.5618 -1.5937 7 8 5.5128 -1.9102 -1.1298 8 6 4.2655 -1.4849 -3.0877 9 6 5.5656 -1.8957 -3.7819 10 6 5.3809 -1.8170 -5.2986 11 9 6.5694 -2.1931 -5.9333 12 6 3.4673 -1.2742 0.6963 13 6 2.0861 -0.8079 1.2024 14 1 1.4478 -1.6631 1.4241 15 6 2.2348 0.0878 2.4338 16 7 2.7628 -0.7031 3.5536 17 6 2.9197 0.1261 4.7559 18 6 3.4615 -0.7176 5.8809 19 8 3.6936 -1.8942 5.6990 20 7 3.6871 -0.1652 7.0893 21 6 4.1795 -0.9329 8.1129 22 1 4.3870 -1.9803 7.9508 23 6 4.4127 -0.3632 9.3586 24 7 4.8795 -1.1004 10.3412 25 14 4.0546 1.4486 9.6389 26 1 5.2681 2.2466 9.3294 27 1 2.9419 1.8760 8.7533 28 1 3.6691 1.6634 11.0568 29 1 -0.3634 0.4522 0.9228 30 1 -0.3632 0.5731 -0.8531 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1561 -0.1723 -2.0836 33 1 1.4524 -1.6705 -1.4042 34 1 3.4636 -2.1580 -3.3910 35 1 4.0092 -0.4638 -3.3703 36 1 6.3678 -1.2228 -3.4785 37 1 5.8215 -2.9168 -3.4992 38 1 4.5786 -2.4896 -5.6023 39 1 5.1252 -0.7957 -5.5810 40 1 4.2425 -0.5998 1.0601 41 1 3.6661 -2.2884 1.0427 42 1 1.2618 0.4971 2.7051 43 1 2.9222 0.9033 2.2091 44 1 2.1763 -1.5028 3.7396 45 1 1.9516 0.5362 5.0435 46 1 3.6121 0.9417 4.5470 47 1 3.5012 0.7756 7.2349 48 1 5.0385 -0.7036 11.2120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106539307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:43 Heat of formation + Delta-G solvation = -160.948014 kcal Electronic energy + Delta-G solvation = -27565.019411 eV Core-core repulsion = 23374.417847 eV Total energy + Delta-G solvation = -4190.601564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.54803 -41.26890 -40.31322 -39.20856 -36.68436 -35.87446 -35.02053 -33.89341 -33.72991 -31.59721 -29.22559 -27.99233 -27.16546 -26.29598 -24.81874 -23.03783 -22.33322 -21.43162 -21.05946 -20.27621 -20.16835 -18.12092 -17.83656 -17.56979 -17.28420 -17.05686 -16.74298 -16.59544 -16.22517 -15.79712 -15.75929 -15.37919 -15.30519 -15.13169 -14.78387 -14.65483 -14.24910 -14.15226 -14.03590 -13.74653 -13.58224 -13.24196 -13.18684 -12.98892 -12.81240 -12.72693 -12.43116 -12.42302 -12.38510 -12.01558 -11.98744 -11.79640 -11.62512 -11.54593 -11.52882 -11.43504 -10.93838 -10.45317 -10.26417 -9.68576 -9.29546 -8.42629 -6.04012 1.28702 1.35329 1.43971 1.59925 1.94504 1.96593 2.22235 2.70800 3.13517 3.28418 3.44264 3.56708 3.70609 3.73039 3.85805 3.89305 4.15093 4.15946 4.24110 4.29046 4.39046 4.39432 4.43250 4.48781 4.53776 4.55175 4.59503 4.71076 4.72597 4.74888 4.80293 4.94148 4.96108 5.00047 5.12043 5.19626 5.24491 5.30654 5.38279 5.51216 5.55117 5.89216 6.04787 6.39464 6.53761 6.58478 6.86676 7.13985 7.38254 7.95535 8.75206 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.001932 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.923874 B =14487.497627 C =15553.624972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.094 0.906 4 C 0.099 3.901 5 N -0.621 5.621 6 C 0.511 3.489 7 O -0.600 6.600 8 C -0.119 4.119 9 C -0.141 4.141 10 C 0.062 3.938 11 F -0.242 7.242 12 C 0.121 3.879 13 C -0.084 4.084 14 H 0.088 0.912 15 C 0.074 3.926 16 N -0.694 5.694 17 C 0.065 3.935 18 C 0.446 3.554 19 O -0.617 6.617 20 N -0.591 5.591 21 C -0.331 4.331 22 H 0.052 0.948 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.968 3.032 26 H -0.259 1.259 27 H -0.228 1.228 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.047 0.953 41 H 0.036 0.964 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.345 0.655 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.816 10.971 -32.587 37.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.113 0.887 4 C -0.023 4.023 5 N -0.354 5.354 6 C 0.302 3.698 7 O -0.481 6.481 8 C -0.158 4.158 9 C -0.179 4.179 10 C 0.007 3.993 11 F -0.223 7.223 12 C -0.002 4.002 13 C -0.104 4.104 14 H 0.106 0.894 15 C -0.055 4.055 16 N -0.326 5.326 17 C -0.068 4.068 18 C 0.234 3.766 19 O -0.501 6.501 20 N -0.232 5.232 21 C -0.460 4.460 22 H 0.071 0.929 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.788 3.212 26 H -0.183 1.183 27 H -0.152 1.152 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.128 0.872 33 H 0.105 0.895 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.163 0.837 45 H 0.100 0.900 46 H 0.129 0.871 47 H 0.226 0.774 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.301 10.016 -32.526 36.540 hybrid contribution -0.062 0.153 1.649 1.657 sum -13.363 10.169 -30.878 35.148 Atomic orbital electron populations 1.21696 0.91808 1.02810 1.03155 1.22387 0.97426 0.99200 0.91847 0.88745 1.22771 0.81166 0.99486 0.98842 1.48729 1.13719 1.66320 1.06644 1.21265 0.82010 0.75876 0.90685 1.90738 1.28559 1.49786 1.79057 1.21546 0.99751 1.06922 0.87577 1.21885 0.98137 1.02668 0.95226 1.22221 0.83184 1.03874 0.90009 1.92731 1.52011 1.93732 1.83872 1.21750 0.98648 0.99998 0.79842 1.22257 0.94185 0.99060 0.94855 0.89417 1.22034 0.99158 0.95391 0.88923 1.60038 1.56842 1.10380 1.05386 1.21603 1.01789 0.95167 0.88201 1.21097 0.82553 0.88777 0.84202 1.90551 1.56969 1.19403 1.83179 1.42026 1.59799 1.11439 1.09974 1.19006 1.41573 0.94846 0.90591 0.92940 1.26169 0.96111 1.05195 0.94072 1.69814 1.45149 1.39205 1.03402 0.85324 0.80354 0.76242 0.79315 1.18323 1.15151 1.19903 0.92027 0.90361 0.92098 0.87160 0.89545 0.85385 0.85051 0.92314 0.92497 0.88027 0.87857 0.93471 0.94542 0.92196 0.90464 0.83660 0.90047 0.87128 0.77395 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 9.31 71.98 0.67 0.04 16 2 C -0.09 -0.73 3.09 -9.40 -0.03 -0.76 16 3 H 0.09 0.71 8.05 -2.39 -0.02 0.69 16 4 C 0.10 0.75 6.16 86.86 0.53 1.29 16 5 N -0.62 -11.41 3.33 -811.79 -2.70 -14.11 16 6 C 0.51 11.18 7.85 87.66 0.69 11.87 16 7 O -0.60 -20.68 16.31 -3.04 -0.05 -20.73 16 8 C -0.12 -1.14 4.71 29.85 0.14 -1.00 16 9 C -0.14 -2.02 4.96 30.59 0.15 -1.87 16 10 C 0.06 0.54 7.55 71.98 0.54 1.08 16 11 F -0.24 -4.33 17.36 44.97 0.78 -3.55 16 12 C 0.12 2.90 6.28 86.72 0.54 3.45 16 13 C -0.08 -1.34 2.60 -9.61 -0.03 -1.36 16 14 H 0.09 1.41 8.04 -2.39 -0.02 1.39 16 15 C 0.07 1.32 5.00 86.30 0.43 1.75 16 16 N -0.69 -19.71 5.94 -517.92 -3.07 -22.79 16 17 C 0.06 1.93 6.17 85.56 0.53 2.46 16 18 C 0.45 20.41 7.82 87.66 0.69 21.10 16 19 O -0.62 -35.11 15.78 -3.07 -0.05 -35.16 16 20 N -0.59 -28.21 5.09 -306.99 -1.56 -29.77 16 21 C -0.33 -19.77 10.16 84.04 0.85 -18.91 16 22 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 23 C -0.02 -0.96 5.50 84.92 0.47 -0.49 16 24 N -0.94 -57.22 13.96 21.66 0.30 -56.92 16 25 Si 0.97 39.00 27.74 68.60 1.90 40.90 16 26 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 27 H -0.23 -7.60 6.51 99.48 0.65 -6.96 16 28 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.06 0.30 8.08 -2.39 -0.02 0.28 16 32 H 0.11 0.16 7.48 -2.39 -0.02 0.14 16 33 H 0.09 0.47 7.99 -2.38 -0.02 0.45 16 34 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.13 0.37 7.85 -2.39 -0.02 0.35 16 36 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.10 0.36 8.14 -2.39 -0.02 0.35 16 39 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.05 1.38 7.77 -2.39 -0.02 1.36 16 41 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 1.36 8.06 -2.39 -0.02 1.34 16 44 H 0.34 10.45 8.43 -89.69 -0.76 9.69 16 45 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 47 H 0.39 15.26 5.76 -92.71 -0.53 14.72 16 48 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -92.02 396.04 1.35 -90.67 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.39 Total: 32.81 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 6.19 Total: 18.64 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -7.03 Total: -123.59 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -0.10 Total: -55.89 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.78 Total: -3.55 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.90 Total: 40.90 kcal Total: -92.02 1.35 -90.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106539307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.279 kcal (2) G-P(sol) polarization free energy of solvation -92.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds