Wall clock time and date at job start Tue Mar 31 2020 04:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99797 * 2 1 4 4 C 1.53002 * 109.46919 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.47079 * 64.99630 * 4 3 2 6 6 C 1.42899 * 113.99778 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47163 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99645 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00352 * 180.02562 * 7 6 5 10 10 C 1.47083 * 120.88068 * 359.71985 * 9 7 6 11 11 C 1.53696 * 108.27451 * 128.75374 * 10 9 7 12 12 N 1.46900 * 109.25519 * 54.08549 * 11 10 9 13 13 C 1.46901 * 110.99770 * 172.60333 * 12 11 10 14 14 C 1.50700 * 109.47368 * 294.30420 * 13 12 11 15 15 O 1.21297 * 119.99946 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00116 * 180.02562 * 14 13 12 17 17 C 1.37102 * 120.00284 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99656 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00157 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00026 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46746 * 60.00312 * 21 19 17 23 23 H 1.48494 * 109.47288 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47241 * 300.00271 * 21 19 17 25 25 C 1.46891 * 111.26978 * 296.75546 * 12 11 10 26 26 C 1.47081 * 120.88156 * 180.02562 * 9 7 6 27 27 H 1.08997 * 109.47421 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47133 * 300.00285 * 1 2 3 29 29 H 1.09009 * 109.46982 * 60.00047 * 1 2 3 30 30 H 1.08997 * 109.47344 * 60.00163 * 3 2 1 31 31 H 1.09005 * 109.47192 * 299.99621 * 3 2 1 32 32 H 1.09004 * 109.46930 * 304.99857 * 4 3 2 33 33 H 1.09000 * 109.47312 * 184.99800 * 4 3 2 34 34 H 1.08997 * 109.47442 * 300.00036 * 6 5 4 35 35 H 1.08997 * 109.47171 * 60.00232 * 6 5 4 36 36 H 1.08996 * 109.63006 * 248.52418 * 10 9 7 37 37 H 1.09007 * 109.62462 * 9.10488 * 10 9 7 38 38 H 1.08999 * 109.64964 * 294.07742 * 11 10 9 39 39 H 1.09002 * 109.41493 * 173.95116 * 11 10 9 40 40 H 1.08998 * 109.47215 * 54.30323 * 13 12 11 41 41 H 1.09003 * 109.46749 * 174.30113 * 13 12 11 42 42 H 0.97007 * 120.00308 * 359.97438 * 16 14 13 43 43 H 0.97003 * 119.99702 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.49053 * 303.14426 * 25 12 11 45 45 H 1.08996 * 109.49604 * 183.06856 * 25 12 11 46 46 H 1.08994 * 109.62895 * 350.89212 * 26 9 7 47 47 H 1.09000 * 109.62996 * 111.47654 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3811 0.4190 -1.3246 7 6 5.7194 -0.2243 -2.6447 8 8 4.8348 -0.5161 -3.4214 9 7 7.0049 -0.4754 -2.9622 10 6 8.0934 -0.1239 -2.0375 11 6 8.9804 -1.3641 -1.8437 12 7 9.4167 -1.8576 -3.1568 13 6 10.4062 -2.9337 -3.0125 14 6 11.6637 -2.3803 -2.3933 15 8 11.7294 -1.2048 -2.1014 16 7 12.7156 -3.1912 -2.1648 17 6 13.8595 -2.6878 -1.6010 18 1 13.9177 -1.6413 -1.3404 19 6 14.9438 -3.5239 -1.3650 20 7 14.8728 -4.7974 -1.6818 21 14 16.5026 -2.8379 -0.5975 22 1 16.1885 -2.2718 0.7389 23 1 17.5030 -3.9256 -0.4522 24 1 17.0556 -1.7707 -1.4697 25 6 8.2736 -2.2986 -3.9670 26 6 7.3571 -1.1019 -4.2454 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8901 32 1 3.8514 0.5682 0.8410 33 1 3.9786 2.1765 0.0889 34 1 5.8628 1.3948 -1.2623 35 1 5.7350 -0.2135 -0.5105 36 1 8.6835 0.6898 -2.4589 37 1 7.6748 0.1819 -1.0786 38 1 8.4150 -2.1428 -1.3319 39 1 9.8528 -1.0960 -1.2476 40 1 10.0003 -3.7170 -2.3723 41 1 10.6366 -3.3493 -3.9935 42 1 12.6633 -4.1312 -2.3986 43 1 15.6300 -5.3810 -1.5173 44 1 7.7180 -3.0643 -3.4257 45 1 8.6332 -2.7085 -4.9108 46 1 6.4515 -1.4431 -4.7470 47 1 7.8778 -0.3802 -4.8747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112718893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:40 Heat of formation + Delta-G solvation = -137.522217 kcal Electronic energy + Delta-G solvation = -28097.894779 eV Core-core repulsion = 23895.936244 eV Total energy + Delta-G solvation = -4201.958535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.31189 -38.90550 -38.44519 -37.49108 -36.92839 -34.53575 -33.80448 -31.52775 -31.29227 -30.77341 -29.13731 -27.62447 -26.52230 -25.53421 -23.86371 -23.59581 -22.90006 -21.27243 -19.32813 -19.01103 -17.92776 -17.63970 -17.19836 -16.93581 -16.28010 -16.15403 -15.93255 -15.51032 -15.26099 -15.09369 -14.86416 -14.81387 -14.51950 -14.04575 -13.98381 -13.75983 -13.64683 -13.16493 -12.82112 -12.68057 -12.50864 -12.26889 -11.97342 -11.76853 -11.62937 -11.55294 -11.42817 -11.27888 -11.18576 -11.14205 -10.83862 -10.46934 -10.24778 -10.06145 -9.99537 -9.75964 -9.50223 -8.88535 -8.40472 -8.02154 -7.92336 -6.44980 -3.86119 2.51506 2.55194 3.17235 3.23726 3.27424 3.41170 3.54965 3.85005 3.91844 4.19733 4.36457 4.63038 4.77731 4.78836 4.86461 4.91766 4.96107 4.97162 4.98989 5.06274 5.07091 5.11223 5.20631 5.20923 5.32901 5.33461 5.36505 5.40510 5.47544 5.71859 5.77983 5.83535 5.87871 6.10126 6.13687 6.22217 6.42023 6.70810 6.84260 7.10891 7.27313 7.34671 7.51592 8.02231 8.09033 8.57501 9.14138 9.50438 10.01532 10.72478 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.001946 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.285022 B =14383.620029 C =14972.193522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.356 6.356 6 C 0.045 3.955 7 C 0.517 3.483 8 O -0.526 6.526 9 N -0.612 5.612 10 C 0.113 3.887 11 C 0.038 3.962 12 N -0.515 5.515 13 C 0.046 3.954 14 C 0.443 3.557 15 O -0.580 6.580 16 N -0.562 5.562 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.040 3.960 26 C 0.121 3.879 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.028 0.972 39 H 0.117 0.883 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.035 0.965 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.871 8.576 2.556 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.274 6.274 6 C -0.035 4.035 7 C 0.304 3.696 8 O -0.401 6.401 9 N -0.348 5.348 10 C -0.010 4.010 11 C -0.090 4.090 12 N -0.240 5.240 13 C -0.085 4.085 14 C 0.228 3.772 15 O -0.464 6.464 16 N -0.198 5.198 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.089 4.089 26 C -0.001 4.001 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.135 0.865 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.106 0.894 46 H 0.112 0.888 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.962 9.213 1.970 23.898 hybrid contribution 0.554 -0.748 0.924 1.312 sum -21.408 8.464 2.894 23.202 Atomic orbital electron populations 1.22748 0.81033 1.02939 0.99801 1.87986 1.19634 1.27158 1.95352 1.22539 0.92134 0.85678 1.00949 1.22608 0.93723 0.97682 0.87597 1.88072 1.19545 1.82081 1.37711 1.22243 0.84004 1.00885 0.96374 1.20165 0.82260 0.79143 0.88052 1.90709 1.46416 1.51735 1.51272 1.48197 1.05459 1.61301 1.19855 1.22041 0.87684 0.98515 0.92718 1.22730 0.99837 0.95331 0.91140 1.61495 1.11499 1.35082 1.15881 1.21852 0.92820 0.92279 1.01514 1.19706 0.84986 0.87336 0.85148 1.90470 1.82735 1.16456 1.56755 1.41870 1.12428 1.11037 1.54515 1.19644 0.90233 0.96610 1.36511 0.87919 1.25267 0.99630 0.95176 0.97811 1.69605 1.32676 1.04024 1.47883 0.85915 0.80542 0.78178 0.79560 1.19928 1.20992 1.19882 1.22524 0.91557 0.95937 0.98851 1.21704 0.98867 0.94797 0.84772 0.89540 0.94236 0.93960 0.91656 0.92237 0.92085 0.91439 0.90185 0.90131 0.89673 0.89978 0.95358 0.86550 0.93417 0.89145 0.77466 0.91785 0.94630 0.89400 0.88786 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.15 10.67 -40.09 -0.43 -4.57 16 3 C 0.06 0.52 6.32 37.16 0.23 0.75 16 4 C 0.06 0.51 6.32 37.16 0.23 0.74 16 5 O -0.36 -4.47 9.84 -59.73 -0.59 -5.05 16 6 C 0.04 0.47 4.78 36.00 0.17 0.65 16 7 C 0.52 7.18 7.78 -10.99 -0.09 7.09 16 8 O -0.53 -9.36 15.95 -14.36 -0.23 -9.59 16 9 N -0.61 -7.84 3.00 -172.15 -0.52 -8.36 16 10 C 0.11 1.35 6.53 -3.36 -0.02 1.32 16 11 C 0.04 0.56 5.27 -3.46 -0.02 0.54 16 12 N -0.51 -8.08 4.37 -235.45 -1.03 -9.11 16 13 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 14 C 0.44 9.92 7.44 -10.99 -0.08 9.84 16 15 O -0.58 -14.61 13.91 5.54 0.08 -14.53 16 16 N -0.56 -13.74 5.29 -10.96 -0.06 -13.80 16 17 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 18 H 0.10 2.89 7.16 -52.48 -0.38 2.52 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 21 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 C 0.04 0.52 5.62 -3.68 -0.02 0.50 16 26 C 0.12 1.52 6.60 -3.58 -0.02 1.50 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.63 7.99 -51.93 -0.41 0.22 16 35 H 0.08 0.71 7.67 -51.93 -0.40 0.31 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.08 0.74 6.02 -51.93 -0.31 0.42 16 38 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.12 2.05 5.77 -51.93 -0.30 1.75 16 40 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 42 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 1.00 7.99 -51.93 -0.41 0.58 16 46 H 0.09 1.20 7.06 -51.93 -0.37 0.84 16 47 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -34.74 386.78 -7.53 -42.27 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.53 Total: 7.38 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 1.23 Total: 17.28 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.88 Total: -54.57 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.17 Total: -33.75 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.74 -7.53 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112718893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.249 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds