Wall clock time and date at job start Tue Mar 31 2020 04:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99797 * 2 1 4 4 C 1.53002 * 109.46919 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46930 * 304.99857 * 4 3 2 6 6 O 1.42905 * 109.47079 * 64.99630 * 4 3 2 7 7 C 1.42900 * 113.99924 * 270.00099 * 6 4 3 8 8 C 1.50703 * 109.47292 * 184.99881 * 4 3 2 9 9 O 1.21275 * 119.99669 * 244.99846 * 8 4 3 10 10 N 1.34778 * 119.99718 * 64.99999 * 8 4 3 11 11 C 1.47071 * 120.88183 * 359.72067 * 10 8 4 12 12 C 1.53701 * 108.27692 * 128.75793 * 11 10 8 13 13 N 1.46896 * 109.25485 * 54.07952 * 12 11 10 14 14 C 1.46901 * 110.99711 * 172.60845 * 13 12 11 15 15 C 1.50699 * 109.47373 * 294.30141 * 14 13 12 16 16 O 1.21288 * 119.99832 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99984 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99919 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00218 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99996 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00073 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.46993 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47317 * 119.99644 * 22 20 18 25 25 H 1.48503 * 109.47155 * 240.00240 * 22 20 18 26 26 C 1.46897 * 111.27118 * 296.75774 * 13 12 11 27 27 C 1.47078 * 120.87544 * 180.02562 * 10 8 4 28 28 H 1.08998 * 109.47133 * 300.00285 * 1 2 3 29 29 H 1.09009 * 109.46982 * 60.00047 * 1 2 3 30 30 H 1.08997 * 109.47421 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47344 * 60.00163 * 3 2 1 32 32 H 1.09005 * 109.47192 * 299.99621 * 3 2 1 33 33 H 1.08995 * 109.47077 * 60.00255 * 7 6 4 34 34 H 1.09006 * 109.46826 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.46882 * 299.99937 * 7 6 4 36 36 H 1.09000 * 109.62788 * 248.52202 * 11 10 8 37 37 H 1.09002 * 109.63155 * 9.10349 * 11 10 8 38 38 H 1.09000 * 109.64552 * 294.07740 * 12 11 10 39 39 H 1.08998 * 109.42218 * 173.95037 * 12 11 10 40 40 H 1.09003 * 109.47335 * 54.30331 * 14 13 12 41 41 H 1.09005 * 109.47163 * 174.30298 * 14 13 12 42 42 H 0.96996 * 120.00267 * 0.02562 * 17 15 14 43 43 H 0.97000 * 119.99928 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.49183 * 303.14557 * 26 13 12 45 45 H 1.09002 * 109.49191 * 183.06266 * 26 13 12 46 46 H 1.08999 * 109.63228 * 350.88805 * 27 10 8 47 47 H 1.08998 * 109.63269 * 111.47656 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8514 0.5682 0.8410 6 8 3.9648 0.5796 -1.2220 7 6 4.0463 -0.8461 -1.1671 8 6 4.1481 2.5560 0.1232 9 8 4.8063 3.0105 -0.7884 10 7 3.9645 3.2771 1.2469 11 6 3.1648 2.7471 2.3617 12 6 3.9910 2.8757 3.6514 13 7 4.4291 4.2689 3.8092 14 6 5.0717 4.4740 5.1141 15 6 4.0551 4.2838 6.2102 16 8 2.9082 4.0043 5.9317 17 7 4.4204 4.4242 7.4998 18 6 3.4957 4.2506 8.4970 19 1 2.4744 4.0017 8.2491 20 6 3.8724 4.3948 9.8267 21 7 5.1151 4.6971 10.1284 22 14 2.6123 4.1590 11.1854 23 1 1.2948 3.8260 10.5862 24 1 3.0449 3.0516 12.0750 25 1 2.4953 5.4114 11.9748 26 6 5.3200 4.6747 2.7140 27 6 4.5530 4.6175 1.3881 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8901 33 1 3.0646 -1.2573 -0.9323 34 1 4.3785 -1.2284 -2.1323 35 1 4.7575 -1.1399 -0.3952 36 1 2.2424 3.3202 2.4555 37 1 2.9306 1.6985 2.1783 38 1 4.8632 2.2244 3.5943 39 1 3.3773 2.5884 4.5051 40 1 5.8796 3.7529 5.2387 41 1 5.4761 5.4850 5.1651 42 1 5.3375 4.6481 7.7225 43 1 5.3780 4.7982 11.0567 44 1 6.1737 3.9983 2.6700 45 1 5.6701 5.6922 2.8879 46 1 5.2372 4.8061 0.5608 47 1 3.7613 5.3667 1.3904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113315930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:25 Heat of formation + Delta-G solvation = -131.749749 kcal Electronic energy + Delta-G solvation = -29246.628845 eV Core-core repulsion = 25044.920623 eV Total energy + Delta-G solvation = -4201.708221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.69338 -39.01961 -38.31211 -37.47503 -36.92310 -34.66523 -33.85766 -31.90386 -31.31796 -30.47494 -28.80861 -27.33392 -26.29812 -25.78381 -24.27442 -23.77100 -23.32879 -21.14118 -19.43491 -19.19330 -17.99924 -17.78128 -17.10560 -16.84993 -16.18992 -16.11349 -15.80067 -15.57363 -15.12651 -15.06217 -14.86318 -14.59217 -14.46446 -14.20662 -13.99898 -13.83033 -13.67637 -13.16477 -13.08034 -12.92195 -12.35192 -12.14713 -11.99530 -11.77612 -11.69393 -11.58778 -11.47649 -11.32287 -11.20842 -11.19230 -10.88953 -10.38619 -10.27787 -10.18200 -9.96978 -9.68100 -9.54127 -8.96498 -8.44983 -8.04829 -7.95687 -6.47149 -3.88162 2.29595 2.51473 3.12182 3.23395 3.29793 3.36560 3.61057 3.82690 3.88598 4.17656 4.36589 4.49188 4.64175 4.77502 4.83840 4.98904 5.00334 5.02670 5.09244 5.12421 5.15682 5.18306 5.26904 5.30311 5.34784 5.37295 5.37921 5.42354 5.60440 5.65873 5.73883 5.78130 5.83831 6.04031 6.08528 6.19586 6.35441 6.68711 6.77797 7.05275 7.22075 7.26132 7.50151 7.95887 8.00588 8.55241 9.12354 9.48377 9.99177 10.70519 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.002588 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.458993 B =10817.335471 C =11889.870604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.037 3.963 4 C 0.078 3.922 5 H 0.095 0.905 6 O -0.356 6.356 7 C 0.028 3.972 8 C 0.521 3.479 9 O -0.520 6.520 10 N -0.609 5.609 11 C 0.106 3.894 12 C 0.038 3.962 13 N -0.514 5.514 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.579 6.579 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.040 3.960 27 C 0.120 3.880 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.029 0.971 39 H 0.118 0.882 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.036 0.964 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 -7.069 -17.841 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.040 4.040 4 C 0.016 3.984 5 H 0.112 0.888 6 O -0.274 6.274 7 C -0.068 4.068 8 C 0.307 3.693 9 O -0.395 6.395 10 N -0.345 5.345 11 C -0.016 4.016 12 C -0.090 4.090 13 N -0.239 5.239 14 C -0.085 4.085 15 C 0.228 3.772 16 O -0.464 6.464 17 N -0.199 5.199 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.089 4.089 27 C -0.002 4.002 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.047 0.953 39 H 0.135 0.865 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.940 -6.757 -18.530 19.941 hybrid contribution 0.506 -0.412 1.339 1.490 sum -2.434 -7.168 -17.191 18.784 Atomic orbital electron populations 1.22794 0.80361 1.03006 1.00423 1.87832 1.20325 1.26924 1.95533 1.23226 0.92347 0.86043 1.02398 1.21868 0.92697 0.93655 0.90212 0.88759 1.87996 1.87813 1.20276 1.31276 1.22958 1.01302 0.80215 1.02336 1.20040 0.81093 0.85980 0.82217 1.90708 1.39581 1.70646 1.38526 1.48232 1.52237 1.17963 1.16061 1.22236 0.95021 0.99299 0.85048 1.22736 0.98921 0.88422 0.98925 1.61500 1.39453 1.22181 1.00779 1.21860 0.95561 1.02054 0.89028 1.19696 0.89271 0.84825 0.83361 1.90469 1.20161 1.53252 1.82512 1.41884 1.12554 1.61236 1.04222 1.19740 0.93608 1.44679 0.84821 0.87810 1.25273 0.96936 0.97189 0.98535 1.69616 1.16547 1.48206 1.19823 0.85807 0.80426 0.77860 0.80288 1.19195 1.20768 1.20722 1.22530 0.93900 1.01536 0.90931 1.21745 0.98270 0.82849 0.97349 0.93526 0.93898 0.89370 0.90861 0.91715 0.92133 0.89527 0.94136 0.89540 0.89573 0.95304 0.86459 0.93388 0.89103 0.77474 0.91868 0.94594 0.89301 0.88674 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.80 8.83 -40.09 -0.35 -4.15 16 3 C 0.04 0.37 5.16 37.16 0.19 0.56 16 4 C 0.08 0.90 2.08 -27.88 -0.06 0.84 16 5 H 0.09 0.97 7.06 -51.93 -0.37 0.60 16 6 O -0.36 -4.64 9.88 -59.70 -0.59 -5.23 16 7 C 0.03 0.27 10.71 101.05 1.08 1.35 16 8 C 0.52 7.09 7.13 -10.98 -0.08 7.01 16 9 O -0.52 -8.87 15.96 -14.30 -0.23 -9.09 16 10 N -0.61 -7.53 3.00 -172.16 -0.52 -8.05 16 11 C 0.11 1.26 5.04 -3.37 -0.02 1.24 16 12 C 0.04 0.56 5.27 -3.46 -0.02 0.54 16 13 N -0.51 -7.83 4.37 -235.44 -1.03 -8.86 16 14 C 0.05 0.77 5.45 -4.98 -0.03 0.74 16 15 C 0.44 9.78 7.44 -10.99 -0.08 9.70 16 16 O -0.58 -14.43 13.91 5.55 0.08 -14.36 16 17 N -0.56 -13.62 5.29 -10.96 -0.06 -13.68 16 18 C -0.30 -8.01 9.68 -14.93 -0.14 -8.16 16 19 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -23.91 13.05 55.50 0.72 -23.19 16 22 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.04 0.49 5.62 -3.68 -0.02 0.47 16 27 C 0.12 1.43 6.60 -3.58 -0.02 1.41 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.66 5.43 -51.93 -0.28 0.38 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.55 6.40 -51.93 -0.33 0.22 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.09 0.85 4.91 -51.93 -0.25 0.59 16 38 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.12 2.04 5.76 -51.93 -0.30 1.75 16 40 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 41 H 0.09 1.36 7.97 -51.93 -0.41 0.95 16 42 H 0.39 9.14 7.90 -40.82 -0.32 8.81 16 43 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.96 7.99 -51.93 -0.41 0.54 16 46 H 0.09 1.14 7.06 -51.93 -0.37 0.78 16 47 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -32.87 377.24 -6.70 -39.57 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.21 Total: 8.41 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 1.82 Total: 17.51 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.88 Total: -53.77 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.10 Total: -32.83 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.87 -6.70 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113315930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.177 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds