Wall clock time and date at job start Tue Mar 31 2020 05:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47177 * 2 1 4 4 C 1.53001 * 109.47454 * 239.99741 * 2 1 3 5 5 O 1.42899 * 109.47136 * 174.56719 * 4 2 1 6 6 N 1.46510 * 109.47073 * 119.99808 * 2 1 3 7 7 C 1.46494 * 119.99762 * 239.75908 * 6 2 1 8 8 C 1.53001 * 109.46893 * 275.37007 * 7 6 2 9 9 H 1.08996 * 109.47385 * 306.61236 * 8 7 6 10 10 C 1.53008 * 109.46999 * 186.61630 * 8 7 6 11 11 O 1.42898 * 109.47397 * 66.61906 * 8 7 6 12 12 C 1.34768 * 119.99853 * 59.75563 * 6 2 1 13 13 O 1.21587 * 119.99889 * 183.56616 * 12 6 2 14 14 N 1.34787 * 120.00187 * 3.29045 * 12 6 2 15 15 C 1.46499 * 119.99786 * 175.00798 * 14 12 6 16 16 C 1.53034 * 109.46099 * 275.02473 * 15 14 12 17 17 C 1.53189 * 109.31211 * 178.60394 * 16 15 14 18 18 N 1.46922 * 108.76556 * 54.65615 * 17 16 15 19 19 C 1.36946 * 120.63050 * 126.36191 * 18 17 16 20 20 H 1.07999 * 119.99625 * 328.40363 * 19 18 17 21 21 C 1.38813 * 119.99891 * 148.40481 * 19 18 17 22 22 N 1.31610 * 120.00161 * 348.76148 * 21 19 18 23 23 Si 1.86797 * 119.99659 * 168.75910 * 21 19 18 24 24 H 1.48504 * 109.47605 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47307 * 119.99990 * 23 21 19 26 26 H 1.48499 * 109.47425 * 239.99797 * 23 21 19 27 27 C 1.46921 * 118.74126 * 306.38677 * 18 17 16 28 28 C 1.53048 * 109.45599 * 154.97351 * 15 14 12 29 29 H 1.08999 * 109.47026 * 307.43574 * 1 2 3 30 30 H 1.08998 * 109.46660 * 67.43309 * 1 2 3 31 31 H 1.08992 * 109.47107 * 187.43398 * 1 2 3 32 32 H 1.09003 * 109.46993 * 294.56868 * 4 2 1 33 33 H 1.08993 * 109.46661 * 54.56519 * 4 2 1 34 34 H 0.96703 * 113.99477 * 179.97438 * 5 4 2 35 35 H 1.08998 * 109.47934 * 35.37510 * 7 6 2 36 36 H 1.09005 * 109.47185 * 155.37429 * 7 6 2 37 37 H 1.09002 * 109.46938 * 60.00073 * 10 8 7 38 38 H 1.08998 * 109.47016 * 180.02562 * 10 8 7 39 39 H 1.09003 * 109.46871 * 300.00388 * 10 8 7 40 40 H 0.96705 * 114.00185 * 65.00277 * 11 8 7 41 41 H 0.96994 * 119.99541 * 355.00930 * 14 12 6 42 42 H 1.08994 * 109.46197 * 35.00609 * 15 14 12 43 43 H 1.09003 * 109.50104 * 298.56969 * 16 15 14 44 44 H 1.09001 * 109.49641 * 58.66706 * 16 15 14 45 45 H 1.09000 * 109.59998 * 294.86926 * 17 16 15 46 46 H 1.09001 * 109.70180 * 174.51114 * 17 16 15 47 47 H 0.97000 * 120.00210 * 180.02562 * 22 21 19 48 48 H 1.09005 * 109.58714 * 293.81605 * 27 18 17 49 49 H 1.08998 * 109.70622 * 173.46222 * 27 18 17 50 50 H 1.09002 * 109.49446 * 301.33791 * 28 15 14 51 51 H 1.09003 * 109.49571 * 61.43313 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 3.4634 -0.6118 -1.3147 6 7 2.0184 -0.6906 1.1963 7 6 2.8649 0.0199 2.1578 8 6 4.3225 -0.0412 1.6966 9 1 4.6044 -1.0791 1.5195 10 6 5.2252 0.5548 2.7788 11 8 4.4713 0.7059 0.4876 12 6 1.6887 -1.9794 1.4120 13 8 2.0396 -2.5334 2.4359 14 7 0.9653 -2.6526 0.4954 15 6 0.7000 -4.0818 0.6774 16 6 1.8769 -4.8926 0.1302 17 6 1.6116 -6.3847 0.3537 18 7 0.3135 -6.7285 -0.2423 19 6 0.2091 -7.7545 -1.1433 20 1 1.0355 -7.9823 -1.8002 21 6 -0.9588 -8.5015 -1.2123 22 7 -1.8759 -8.3769 -0.2765 23 14 -1.2288 -9.6836 -2.6332 24 1 -0.0568 -9.6388 -3.5440 25 1 -1.3929 -11.0621 -2.1060 26 1 -2.4512 -9.2902 -3.3790 27 6 -0.8706 -5.9502 0.1463 28 6 -0.5774 -4.4630 -0.0746 29 1 -0.3633 0.6247 0.8160 30 1 -0.3632 0.3944 -0.9490 31 1 -0.3633 -1.0190 0.1330 32 1 1.7584 -1.7732 -1.2018 33 1 1.5995 -0.2668 -2.1364 34 1 3.8564 -1.0477 -2.0832 35 1 2.5475 1.0606 2.2221 36 1 2.7740 -0.4489 3.1378 37 1 5.1118 -0.0150 3.7010 38 1 6.2636 0.5117 2.4500 39 1 4.9433 1.5927 2.9560 40 1 4.3113 1.6542 0.5890 41 1 0.6205 -2.1907 -0.2847 42 1 0.5740 -4.2955 1.7387 43 1 1.9878 -4.6984 -0.9367 44 1 2.7905 -4.6039 0.6499 45 1 1.5903 -6.5962 1.4228 46 1 2.3982 -6.9727 -0.1194 47 1 -2.6919 -8.8992 -0.3245 48 1 -1.0944 -6.1262 1.1985 49 1 -1.7232 -6.2490 -0.4635 50 1 -1.4108 -3.8683 0.2994 51 1 -0.4431 -4.2728 -1.1395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116737686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:59 Heat of formation + Delta-G solvation = -88.476013 kcal Electronic energy + Delta-G solvation = -31006.969249 eV Core-core repulsion = 26942.970613 eV Total energy + Delta-G solvation = -4063.998637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.70528 -38.07253 -37.17282 -37.05492 -35.12903 -34.44543 -32.40493 -31.68202 -30.49687 -30.05205 -29.31073 -26.42445 -26.18624 -24.78858 -22.82917 -22.22489 -21.81126 -21.38457 -20.13266 -19.05436 -17.55711 -17.10436 -17.02785 -16.62891 -16.03664 -15.52362 -15.35192 -14.96214 -14.78116 -14.51122 -14.26395 -14.02446 -13.72670 -13.51758 -13.37796 -12.97103 -12.79498 -12.65652 -12.61167 -12.39435 -12.31977 -12.28312 -11.96261 -11.61948 -11.42262 -11.12222 -11.03997 -10.94903 -10.78689 -10.73311 -10.44524 -10.26675 -10.21628 -10.04382 -9.96634 -9.88456 -9.66118 -9.50191 -8.73300 -8.49158 -8.28838 -6.60686 -5.78032 -3.25295 2.74442 3.36515 3.40649 3.44344 3.46446 3.93757 4.00370 4.37374 4.49393 4.66115 4.83270 4.93494 4.96596 5.00650 5.16572 5.21202 5.23743 5.28760 5.38443 5.39275 5.46310 5.52996 5.54649 5.60338 5.63462 5.69550 5.85551 5.89010 5.95455 6.04025 6.11602 6.32896 6.40917 6.45848 6.57523 6.64695 6.65582 6.84266 6.96661 7.03700 7.15373 7.35548 7.64365 7.66584 7.68346 7.80331 8.14203 8.48793 8.82468 9.23391 9.84840 10.43891 11.30603 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.002955 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.344672 B = 9472.674030 C = 9606.999481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.147 3.853 3 H 0.097 0.903 4 C 0.045 3.955 5 O -0.533 6.533 6 N -0.615 5.615 7 C 0.105 3.895 8 C 0.090 3.910 9 H 0.098 0.902 10 C -0.184 4.184 11 O -0.530 6.530 12 C 0.708 3.292 13 O -0.592 6.592 14 N -0.743 5.743 15 C 0.163 3.837 16 C -0.137 4.137 17 C 0.148 3.852 18 N -0.593 5.593 19 C -0.251 4.251 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.904 5.904 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.177 3.823 28 C -0.146 4.146 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.368 0.632 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.355 0.645 41 H 0.394 0.606 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.253 0.747 48 H 0.021 0.979 49 H 0.091 0.909 50 H 0.052 0.948 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.568 22.782 0.330 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.042 3.958 3 H 0.115 0.885 4 C -0.035 4.035 5 O -0.336 6.336 6 N -0.351 5.351 7 C -0.019 4.019 8 C 0.030 3.970 9 H 0.116 0.884 10 C -0.242 4.242 11 O -0.332 6.332 12 C 0.409 3.591 13 O -0.470 6.470 14 N -0.403 5.403 15 C 0.059 3.941 16 C -0.177 4.177 17 C 0.021 3.979 18 N -0.316 5.316 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.549 5.549 23 Si 0.734 3.266 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.050 3.950 28 C -0.186 4.186 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.213 0.787 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.200 0.800 41 H 0.235 0.765 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.039 0.961 49 H 0.109 0.891 50 H 0.071 0.929 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.705 21.983 1.404 23.336 hybrid contribution -0.483 -0.125 -1.341 1.431 sum 7.221 21.857 0.063 23.019 Atomic orbital electron populations 1.22453 0.94581 1.03911 1.03224 1.21010 0.93033 0.97634 0.84096 0.88495 1.22883 0.83849 0.99958 0.96765 1.86796 1.17891 1.79259 1.49666 1.47003 1.53608 1.10510 1.24028 1.22028 0.90265 0.96204 0.93400 1.22284 0.92996 0.97028 0.84722 0.88365 1.22486 1.00800 1.01060 0.99877 1.86904 1.92963 1.21468 1.31872 1.15960 0.78908 0.80677 0.83510 1.90891 1.60481 1.68070 1.27539 1.46390 1.57104 1.11375 1.25470 1.20928 0.95381 0.76932 1.00903 1.22367 0.97087 0.98133 1.00123 1.20884 0.89463 0.91497 0.96074 1.44052 1.02492 1.35693 1.49328 1.19223 1.01059 1.07206 1.10627 0.91785 1.25173 0.98775 0.97797 0.97772 1.69981 1.09428 1.42997 1.32490 0.86200 0.77727 0.80769 0.81933 1.20259 1.21655 1.21619 1.20721 0.91451 0.84242 0.98566 1.22554 0.94998 1.01748 0.99343 0.91237 0.90809 0.90968 0.92571 0.93255 0.78665 0.91237 0.88955 0.91526 0.91787 0.92576 0.80016 0.76540 0.90012 0.92713 0.92879 0.96180 0.92662 0.93644 0.96092 0.89094 0.92897 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.01 37.16 0.33 -1.18 16 2 C 0.15 1.38 2.41 -67.92 -0.16 1.21 16 3 H 0.10 0.79 7.62 -51.93 -0.40 0.39 16 4 C 0.05 0.44 6.16 37.16 0.23 0.67 16 5 O -0.53 -5.70 10.82 -57.85 -0.63 -6.33 16 6 N -0.61 -7.46 2.37 -171.79 -0.41 -7.87 16 7 C 0.11 1.10 5.14 -4.04 -0.02 1.08 16 8 C 0.09 0.92 3.83 -26.73 -0.10 0.82 16 9 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 10 C -0.18 -1.46 9.49 37.16 0.35 -1.10 16 11 O -0.53 -5.20 9.72 -57.85 -0.56 -5.76 16 12 C 0.71 11.36 7.60 -86.92 -0.66 10.70 16 13 O -0.59 -11.82 15.46 5.29 0.08 -11.74 16 14 N -0.74 -11.25 3.28 -58.64 -0.19 -11.44 16 15 C 0.16 2.95 2.46 -67.89 -0.17 2.79 16 16 C -0.14 -2.60 5.65 -26.62 -0.15 -2.75 16 17 C 0.15 3.26 6.52 -3.71 -0.02 3.24 16 18 N -0.59 -14.96 2.98 -172.33 -0.51 -15.47 16 19 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 20 H 0.06 1.73 7.85 -52.49 -0.41 1.32 16 21 C 0.00 0.09 5.03 -17.43 -0.09 0.01 16 22 N -0.90 -26.12 11.10 55.49 0.62 -25.51 16 23 Si 0.90 21.57 29.57 -169.99 -5.03 16.55 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.18 4.19 5.25 -3.72 -0.02 4.17 16 28 C -0.15 -2.73 5.55 -26.61 -0.15 -2.88 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.07 0.73 5.21 -51.93 -0.27 0.46 16 32 H 0.06 0.64 4.97 -51.93 -0.26 0.38 16 33 H 0.05 0.38 8.13 -51.93 -0.42 -0.04 16 34 H 0.37 2.94 9.12 45.56 0.42 3.35 16 35 H 0.07 0.54 8.03 -51.93 -0.42 0.12 16 36 H 0.09 1.12 7.22 -51.93 -0.38 0.75 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.36 2.24 9.03 45.56 0.41 2.65 16 41 H 0.39 5.07 3.34 -40.82 -0.14 4.93 16 42 H 0.08 1.69 7.51 -51.93 -0.39 1.30 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 50 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -33.57 388.42 -8.74 -42.31 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.19 Total: 9.68 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -0.77 Total: 9.73 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.50 Total: -60.29 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -1.11 Total: -23.83 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.57 -8.74 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116737686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.164 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds