Wall clock time and date at job start Tue Mar 31 2020 05:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47574 * 2 1 4 4 O 1.42898 * 109.47276 * 239.99463 * 2 1 3 5 5 C 1.53002 * 109.47183 * 119.99895 * 2 1 3 6 6 N 1.46498 * 109.47272 * 183.26796 * 5 2 1 7 7 C 1.34775 * 120.00019 * 270.95816 * 6 5 2 8 8 O 1.21592 * 120.00187 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00154 * 0.02562 * 7 6 5 10 10 C 1.46503 * 120.00312 * 180.02562 * 9 7 6 11 11 C 1.53350 * 109.41540 * 275.12325 * 10 9 7 12 12 C 1.53187 * 109.14813 * 178.67310 * 11 10 9 13 13 N 1.46924 * 108.89523 * 54.57580 * 12 11 10 14 14 C 1.36937 * 120.63068 * 126.29597 * 13 12 11 15 15 H 1.08006 * 120.00012 * 327.82568 * 14 13 12 16 16 C 1.38808 * 120.00185 * 147.82679 * 14 13 12 17 17 N 1.31622 * 120.00260 * 169.16998 * 16 14 13 18 18 Si 1.86805 * 119.99665 * 349.16636 * 16 14 13 19 19 H 1.48496 * 109.46839 * 87.89149 * 18 16 14 20 20 H 1.48504 * 109.47071 * 207.88452 * 18 16 14 21 21 H 1.48495 * 109.47356 * 327.88726 * 18 16 14 22 22 C 1.46921 * 118.74067 * 306.32403 * 13 12 11 23 23 C 1.53031 * 109.46174 * 154.99432 * 10 9 7 24 24 C 1.46499 * 120.00256 * 90.96227 * 6 5 2 25 25 H 1.08995 * 109.47569 * 186.09776 * 24 6 5 26 26 C 1.53004 * 109.46719 * 306.10063 * 24 6 5 27 27 C 1.53005 * 109.47373 * 66.09511 * 24 6 5 28 28 O 1.42897 * 109.47055 * 293.50932 * 27 24 6 29 29 H 1.09001 * 109.47532 * 300.00304 * 1 2 3 30 30 H 1.09000 * 109.46949 * 60.00248 * 1 2 3 31 31 H 1.09004 * 109.47060 * 180.02562 * 1 2 3 32 32 H 0.96698 * 114.00305 * 306.68256 * 4 2 1 33 33 H 1.09007 * 109.47415 * 63.26507 * 5 2 1 34 34 H 1.09002 * 109.47418 * 303.27027 * 5 2 1 35 35 H 0.97000 * 119.99827 * 359.97438 * 9 7 6 36 36 H 1.08997 * 109.45780 * 35.02166 * 10 9 7 37 37 H 1.09008 * 109.68643 * 58.70850 * 11 10 9 38 38 H 1.08995 * 109.47557 * 298.51220 * 11 10 9 39 39 H 1.09007 * 109.58584 * 294.71725 * 12 11 10 40 40 H 1.09005 * 109.58667 * 174.43515 * 12 11 10 41 41 H 0.96999 * 119.99732 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.58962 * 173.39142 * 22 13 12 43 43 H 1.09007 * 109.58691 * 293.67481 * 22 13 12 44 44 H 1.09006 * 109.49803 * 61.43429 * 23 10 9 45 45 H 1.08996 * 109.50263 * 301.33724 * 23 10 9 46 46 H 1.08999 * 109.47216 * 60.00058 * 26 24 6 47 47 H 1.09003 * 109.46896 * 180.02562 * 26 24 6 48 48 H 1.08998 * 109.46964 * 299.99834 * 26 24 6 49 49 H 1.09003 * 109.46841 * 53.50490 * 27 24 6 50 50 H 1.08995 * 109.47056 * 173.50670 * 27 24 6 51 51 H 0.96705 * 114.00252 * 184.99079 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 7 3.5028 -0.6534 1.2893 7 6 4.2384 -1.6101 0.6893 8 8 5.4526 -1.5541 0.7229 9 7 3.6283 -2.6289 0.0519 10 6 4.4279 -3.6692 -0.5999 11 6 4.8134 -3.2070 -2.0103 12 6 5.6767 -4.2846 -2.6738 13 7 4.9558 -5.5641 -2.6322 14 6 4.7475 -6.2850 -3.7777 15 1 4.6153 -5.7748 -4.7204 16 6 4.7063 -7.6716 -3.7272 17 7 4.2980 -8.3565 -4.7745 18 14 5.2305 -8.5656 -2.1730 19 1 4.0650 -8.7009 -1.2629 20 1 5.7418 -9.9144 -2.5263 21 1 6.3014 -7.7924 -1.4944 22 6 4.4620 -6.0551 -1.3385 23 6 3.6108 -4.9601 -0.6879 24 6 4.1661 0.4542 1.9816 25 1 5.2416 0.3954 1.8143 26 6 3.6375 1.7839 1.4398 27 6 3.8778 0.3640 3.4816 28 8 2.4863 0.5921 3.7136 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6399 -1.5606 -1.2859 33 1 1.7252 -1.7645 1.2206 34 1 1.6296 -0.2424 2.1383 35 1 2.6597 -2.6738 0.0254 36 1 5.3316 -3.8503 -0.0181 37 1 5.3765 -2.2755 -1.9504 38 1 3.9107 -3.0496 -2.6006 39 1 6.6202 -4.3791 -2.1361 40 1 5.8727 -4.0090 -3.7100 41 1 4.2696 -9.3254 -4.7393 42 1 3.8542 -6.9465 -1.4938 43 1 5.3064 -6.2965 -0.6929 44 1 2.7193 -4.7861 -1.2905 45 1 3.3178 -5.2743 0.3139 46 1 2.5621 1.8427 1.6073 47 1 4.1314 2.6080 1.9546 48 1 3.8430 1.8482 0.3713 49 1 4.1489 -0.6273 3.8447 50 1 4.4625 1.1170 4.0099 51 1 2.2439 0.6255 4.6492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116737688.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:08 Heat of formation + Delta-G solvation = -97.831104 kcal Electronic energy + Delta-G solvation = -30949.138104 eV Core-core repulsion = 26884.733800 eV Total energy + Delta-G solvation = -4064.404304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61193 -38.41507 -37.56255 -37.30707 -35.14669 -34.41645 -32.42625 -31.74717 -31.02330 -30.35473 -29.50900 -27.03414 -26.22995 -24.86838 -22.93165 -22.26028 -22.08206 -21.18528 -19.70796 -19.45740 -18.56182 -17.61509 -16.99152 -16.66704 -16.18912 -15.76961 -15.48403 -15.31541 -14.85758 -14.40921 -14.23879 -14.09959 -14.05808 -13.74125 -13.69675 -13.09470 -12.99890 -12.90651 -12.78295 -12.50277 -12.37321 -12.28194 -12.12809 -11.93396 -11.70574 -11.58799 -11.32843 -10.99145 -10.86319 -10.78294 -10.54980 -10.43379 -10.35426 -10.17676 -10.05243 -9.85907 -9.63797 -9.43730 -8.83025 -8.61565 -8.39527 -6.86757 -5.89909 -3.33777 2.64221 3.31227 3.37575 3.49569 3.52138 3.85742 3.96686 4.20569 4.54302 4.54883 4.62333 4.71913 4.83609 4.88962 4.99978 5.04294 5.10136 5.16013 5.24673 5.30867 5.37727 5.42336 5.44206 5.51148 5.70074 5.71670 5.74549 5.76918 5.85460 5.92316 6.01601 6.10625 6.21659 6.22567 6.37426 6.49439 6.52090 6.62660 6.70671 6.76422 6.88984 6.96736 7.10254 7.21050 7.47211 8.05723 8.09559 8.39028 8.78275 8.98418 9.75056 10.14993 11.26393 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.020185 B = 0.003158 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.837887 B = 8864.101387 C = 9283.795184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.074 3.926 3 H 0.105 0.895 4 O -0.551 6.551 5 C 0.074 3.926 6 N -0.616 5.616 7 C 0.712 3.288 8 O -0.596 6.596 9 N -0.731 5.731 10 C 0.169 3.831 11 C -0.137 4.137 12 C 0.151 3.849 13 N -0.608 5.608 14 C -0.257 4.257 15 H 0.085 0.915 16 C 0.021 3.979 17 N -0.917 5.917 18 Si 0.895 3.105 19 H -0.289 1.289 20 H -0.305 1.305 21 H -0.269 1.269 22 C 0.124 3.876 23 C -0.139 4.139 24 C 0.156 3.844 25 H 0.112 0.888 26 C -0.159 4.159 27 C 0.066 3.934 28 O -0.568 6.568 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.369 0.631 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.386 0.614 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.064 0.936 41 H 0.262 0.738 42 H 0.076 0.924 43 H 0.029 0.971 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.050 0.950 50 H 0.055 0.945 51 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.073 20.119 18.557 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.014 3.986 3 H 0.123 0.877 4 O -0.356 6.356 5 C -0.050 4.050 6 N -0.353 5.353 7 C 0.414 3.586 8 O -0.475 6.475 9 N -0.386 5.386 10 C 0.064 3.936 11 C -0.177 4.177 12 C 0.024 3.976 13 N -0.332 5.332 14 C -0.386 4.386 15 H 0.103 0.897 16 C -0.177 4.177 17 N -0.560 5.560 18 Si 0.726 3.274 19 H -0.217 1.217 20 H -0.234 1.234 21 H -0.194 1.194 22 C -0.002 4.002 23 C -0.179 4.179 24 C 0.051 3.949 25 H 0.130 0.870 26 C -0.217 4.217 27 C -0.013 4.013 28 O -0.374 6.374 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.217 0.783 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.221 0.779 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.047 0.953 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.848 20.532 17.749 27.990 hybrid contribution -0.723 -1.143 1.568 2.071 sum -7.570 19.389 19.317 28.397 Atomic orbital electron populations 1.22483 0.96081 1.02777 1.03032 1.22672 0.92819 0.97870 0.85246 0.87736 1.86731 1.71367 1.32973 1.44525 1.22486 0.81004 1.01051 1.00467 1.46946 1.05439 1.25357 1.57519 1.15862 0.85143 0.79616 0.77962 1.90887 1.11825 1.78091 1.66662 1.45499 1.09362 1.25745 1.57956 1.20886 0.94052 0.85286 0.93352 1.22402 1.00982 0.99064 0.95291 1.20919 0.92572 0.85042 0.99019 1.44363 1.63141 1.21985 1.03703 1.18951 1.43929 0.88453 0.87237 0.89722 1.25401 0.99189 0.96433 0.96694 1.69756 1.49886 1.06715 1.29693 0.86847 0.78916 0.78327 0.83275 1.21660 1.23393 1.19367 1.21415 0.95522 0.95528 0.87720 1.22339 0.99851 0.95634 1.00115 1.20996 0.99100 0.85966 0.88789 0.86980 1.22159 1.02248 0.95817 1.01469 1.22687 0.82157 0.99839 0.96629 1.86405 1.24976 1.95659 1.30383 0.91389 0.91512 0.92139 0.78327 0.91475 0.86676 0.77872 0.90176 0.92170 0.91941 0.95784 0.91703 0.92786 0.90656 0.95277 0.91350 0.92519 0.91361 0.91813 0.92051 0.93189 0.92638 0.77717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 9.48 37.15 0.35 -0.88 16 2 C 0.07 0.65 3.57 -26.73 -0.10 0.55 16 3 H 0.10 0.98 5.44 -51.93 -0.28 0.70 16 4 O -0.55 -6.22 11.84 -35.23 -0.42 -6.64 16 5 C 0.07 0.64 4.22 -4.04 -0.02 0.63 16 6 N -0.62 -7.04 2.37 -171.79 -0.41 -7.45 16 7 C 0.71 10.86 7.81 -86.92 -0.68 10.18 16 8 O -0.60 -11.40 15.34 5.29 0.08 -11.31 16 9 N -0.73 -10.22 4.27 -58.48 -0.25 -10.47 16 10 C 0.17 2.84 2.42 -67.73 -0.16 2.67 16 11 C -0.14 -2.49 5.68 -26.45 -0.15 -2.64 16 12 C 0.15 3.16 6.50 -3.71 -0.02 3.14 16 13 N -0.61 -14.63 2.75 -172.32 -0.47 -15.10 16 14 C -0.26 -7.26 10.07 -15.06 -0.15 -7.41 16 15 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 16 C 0.02 0.62 5.37 -17.43 -0.09 0.53 16 17 N -0.92 -28.37 13.97 55.49 0.78 -27.60 16 18 Si 0.89 22.72 24.23 -169.99 -4.12 18.60 16 19 H -0.29 -6.96 6.53 56.52 0.37 -6.59 16 20 H -0.31 -7.91 7.11 56.52 0.40 -7.51 16 21 H -0.27 -6.72 6.30 56.52 0.36 -6.37 16 22 C 0.12 2.70 4.14 -3.71 -0.02 2.68 16 23 C -0.14 -2.38 5.55 -26.61 -0.15 -2.53 16 24 C 0.16 1.56 3.15 -67.93 -0.21 1.34 16 25 H 0.11 1.34 6.92 -51.93 -0.36 0.98 16 26 C -0.16 -1.34 7.69 37.16 0.29 -1.05 16 27 C 0.07 0.48 6.84 37.16 0.25 0.74 16 28 O -0.57 -3.43 9.91 -35.23 -0.35 -3.78 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.37 3.42 7.83 45.56 0.36 3.78 16 33 H 0.07 0.55 6.42 -51.93 -0.33 0.22 16 34 H 0.12 0.92 5.13 -51.93 -0.27 0.65 16 35 H 0.39 4.41 4.80 -40.82 -0.20 4.21 16 36 H 0.08 1.52 7.58 -51.93 -0.39 1.12 16 37 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 40 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.08 1.76 4.35 -51.93 -0.23 1.54 16 43 H 0.03 0.64 6.77 -51.93 -0.35 0.29 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 0.54 5.87 -51.93 -0.30 0.24 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.61 7.83 -51.93 -0.41 0.20 16 49 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.38 0.81 9.12 45.56 0.42 1.23 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -35.09 379.05 -7.35 -42.44 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.05 Total: 7.64 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -0.86 Total: 7.96 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.36 Total: -60.62 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.69 Total: -21.73 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.12 Total: 18.60 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.09 -7.35 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116737688.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.391 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds