Wall clock time and date at job start Tue Mar 31 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47709 * 2 1 4 4 O 1.42904 * 109.46923 * 119.99827 * 2 1 3 5 5 C 1.53001 * 109.47013 * 239.99733 * 2 1 3 6 6 N 1.46503 * 109.47365 * 180.02562 * 5 2 1 7 7 C 1.34772 * 119.99623 * 270.00320 * 6 5 2 8 8 O 1.21588 * 119.99907 * 174.70143 * 7 6 5 9 9 N 1.34775 * 120.00233 * 354.70009 * 7 6 5 10 10 C 1.46502 * 119.99928 * 185.22083 * 9 7 6 11 11 C 1.53034 * 109.46164 * 275.03026 * 10 9 7 12 12 C 1.53195 * 109.31216 * 178.60073 * 11 10 9 13 13 N 1.46929 * 108.76607 * 54.65607 * 12 11 10 14 14 C 1.36937 * 120.63517 * 126.35879 * 13 12 11 15 15 H 1.07994 * 120.00281 * 209.23253 * 14 13 12 16 16 C 1.38813 * 119.99667 * 29.23532 * 14 13 12 17 17 N 1.31623 * 120.00046 * 16.96393 * 16 14 13 18 18 Si 1.86802 * 119.99961 * 196.96800 * 16 14 13 19 19 H 1.48497 * 109.47238 * 94.98026 * 18 16 14 20 20 H 1.48502 * 109.46861 * 214.98490 * 18 16 14 21 21 H 1.48504 * 109.46785 * 334.98305 * 18 16 14 22 22 C 1.46929 * 118.73577 * 306.38487 * 13 12 11 23 23 C 1.53041 * 109.46076 * 154.97056 * 10 9 7 24 24 C 1.46500 * 120.00068 * 89.99362 * 6 5 2 25 25 H 1.09002 * 109.47005 * 0.54784 * 24 6 5 26 26 C 1.52990 * 109.47578 * 240.53933 * 24 6 5 27 27 C 1.53005 * 109.46521 * 120.53932 * 24 6 5 28 28 O 1.42897 * 109.47380 * 298.54820 * 27 24 6 29 29 H 1.08996 * 109.47433 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46861 * 300.00180 * 1 2 3 31 31 H 1.09000 * 109.46748 * 59.99779 * 1 2 3 32 32 H 0.96704 * 113.99882 * 60.00357 * 4 2 1 33 33 H 1.08995 * 109.47148 * 59.99914 * 5 2 1 34 34 H 1.09004 * 109.47084 * 299.99994 * 5 2 1 35 35 H 0.96995 * 120.00057 * 5.22461 * 9 7 6 36 36 H 1.09005 * 109.46129 * 35.00424 * 10 9 7 37 37 H 1.09001 * 109.49606 * 298.56423 * 11 10 9 38 38 H 1.09002 * 109.50138 * 58.66338 * 11 10 9 39 39 H 1.08994 * 109.60140 * 294.86560 * 12 11 10 40 40 H 1.09001 * 109.70255 * 174.50157 * 12 11 10 41 41 H 0.96996 * 119.99591 * 180.02562 * 17 16 14 42 42 H 1.09006 * 109.58210 * 293.81762 * 22 13 12 43 43 H 1.09000 * 109.70383 * 173.47085 * 22 13 12 44 44 H 1.09002 * 109.49871 * 301.34137 * 23 10 9 45 45 H 1.08997 * 109.49151 * 61.43434 * 23 10 9 46 46 H 1.09005 * 109.47359 * 300.72351 * 26 24 6 47 47 H 1.09005 * 109.47021 * 60.72050 * 26 24 6 48 48 H 1.09005 * 109.47404 * 180.71994 * 26 24 6 49 49 H 1.09001 * 109.46524 * 178.55250 * 27 24 6 50 50 H 1.08999 * 109.47003 * 58.54976 * 27 24 6 51 51 H 0.96700 * 114.00375 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7219 -1.2490 7 6 4.1793 0.2888 -1.8323 8 8 5.3913 0.3389 -1.7491 9 7 3.5102 1.2439 -2.5080 10 6 4.2479 2.2780 -3.2379 11 6 4.6126 3.4154 -2.2812 12 6 5.4139 4.4781 -3.0397 13 7 4.6415 4.9029 -4.2151 14 6 4.3726 6.2280 -4.4317 15 1 3.4761 6.5179 -4.9596 16 6 5.2524 7.1988 -3.9728 17 7 6.4809 6.8673 -3.6363 18 14 4.6927 8.9754 -3.8327 19 1 4.2323 9.2416 -2.4462 20 1 5.8252 9.8784 -4.1604 21 1 3.5755 9.2186 -4.7804 22 6 4.1625 3.8788 -5.1535 23 6 3.3756 2.8226 -4.3713 24 6 4.2370 -1.8209 -0.6145 25 1 3.5284 -2.5430 -0.2089 26 6 5.1065 -1.2687 0.5167 27 6 5.1267 -2.5075 -1.6529 28 8 4.3118 -3.0528 -2.6924 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7210 -1.5953 1.2329 33 1 1.6767 -0.2076 -2.1392 34 1 1.6767 -1.7490 -1.2492 35 1 2.5403 1.2466 -2.5110 36 1 5.1587 1.8483 -3.6551 37 1 3.7016 3.8619 -1.8828 38 1 5.2144 3.0226 -1.4615 39 1 6.3667 4.0574 -3.3611 40 1 5.5933 5.3355 -2.3910 41 1 7.0955 7.5456 -3.3153 42 1 5.0133 3.4092 -5.6473 43 1 3.5149 4.3385 -5.9001 44 1 3.0967 2.0078 -5.0394 45 1 2.4764 3.2747 -3.9530 46 1 5.8065 -0.5372 0.1131 47 1 4.4715 -0.7907 1.2628 48 1 5.6608 -2.0847 0.9805 49 1 5.6906 -3.3087 -1.1752 50 1 5.8181 -1.7795 -2.0772 51 1 4.8104 -3.5045 -3.3870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116737689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:13 Heat of formation + Delta-G solvation = -105.406141 kcal Electronic energy + Delta-G solvation = -30718.918372 eV Core-core repulsion = 26654.185590 eV Total energy + Delta-G solvation = -4064.732782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.53734 -38.18650 -37.56420 -36.79343 -34.97718 -34.45500 -32.72108 -31.74326 -30.68845 -29.88525 -29.12454 -26.39488 -26.00126 -24.91963 -22.86532 -22.17919 -22.00984 -21.30087 -19.80134 -19.05074 -17.89064 -17.34832 -16.95788 -16.53169 -16.38631 -15.62075 -15.47143 -14.99494 -14.76125 -14.47528 -14.21318 -13.89736 -13.64276 -13.55779 -13.42504 -12.94278 -12.90961 -12.77036 -12.51477 -12.34004 -12.28426 -12.22717 -11.97326 -11.81348 -11.42799 -11.20806 -11.08386 -10.97501 -10.86612 -10.72222 -10.56952 -10.32572 -10.21418 -10.15364 -10.01448 -9.70346 -9.64876 -9.36849 -8.71259 -8.46926 -8.28143 -6.63369 -5.75351 -3.19343 2.72975 3.39854 3.42158 3.46682 3.48169 3.93422 4.08020 4.13910 4.51184 4.52100 4.72868 4.80022 4.96307 5.03128 5.08102 5.24910 5.32233 5.37101 5.38884 5.44082 5.49847 5.51134 5.63851 5.71010 5.72020 5.76402 5.82099 5.89412 6.00602 6.14159 6.28322 6.36006 6.40609 6.53188 6.61696 6.70203 6.72847 6.85318 6.96878 7.02505 7.14996 7.36568 7.43591 7.48986 7.72560 7.83166 8.17822 8.49135 8.86730 9.24563 9.87684 10.45367 11.33108 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.003115 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.870082 B = 8986.742612 C = 9546.519136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.081 3.919 3 H 0.101 0.899 4 O -0.552 6.552 5 C 0.084 3.916 6 N -0.614 5.614 7 C 0.709 3.291 8 O -0.584 6.584 9 N -0.741 5.741 10 C 0.170 3.830 11 C -0.145 4.145 12 C 0.175 3.825 13 N -0.592 5.592 14 C -0.256 4.256 15 H 0.065 0.935 16 C 0.004 3.996 17 N -0.900 5.900 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.150 3.850 23 C -0.139 4.139 24 C 0.182 3.818 25 H 0.082 0.918 26 C -0.172 4.172 27 C 0.052 3.948 28 O -0.573 6.573 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.368 0.632 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.387 0.613 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.086 0.914 41 H 0.254 0.746 42 H 0.019 0.981 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.047 0.953 50 H 0.071 0.929 51 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.523 -21.312 6.302 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.020 3.980 3 H 0.119 0.881 4 O -0.356 6.356 5 C -0.040 4.040 6 N -0.351 5.351 7 C 0.411 3.589 8 O -0.463 6.463 9 N -0.396 5.396 10 C 0.066 3.934 11 C -0.186 4.186 12 C 0.049 3.951 13 N -0.315 5.315 14 C -0.385 4.385 15 H 0.083 0.917 16 C -0.195 4.195 17 N -0.544 5.544 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.022 3.978 23 C -0.179 4.179 24 C 0.077 3.923 25 H 0.100 0.900 26 C -0.229 4.229 27 C -0.026 4.026 28 O -0.378 6.378 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.215 0.785 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.221 0.779 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.066 0.934 50 H 0.090 0.910 51 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.665 -20.306 6.850 23.509 hybrid contribution -0.645 0.110 -0.338 0.737 sum -10.310 -20.196 6.512 23.592 Atomic orbital electron populations 1.22456 0.95860 1.02586 1.03306 1.22486 0.92875 0.97478 0.85137 0.88149 1.86667 1.76963 1.28493 1.43477 1.22227 0.81347 1.02090 0.98384 1.46921 1.04918 1.23075 1.60154 1.15892 0.85366 0.79277 0.78332 1.90842 1.11965 1.77967 1.65481 1.45689 1.09305 1.29789 1.54798 1.20862 0.94637 0.86385 0.91489 1.22552 1.00902 0.96741 0.98380 1.20726 0.91034 0.94923 0.88430 1.44091 1.63303 1.02052 1.22044 1.19178 1.02529 0.81589 1.35232 0.91722 1.25081 0.94562 0.98004 1.01817 1.70046 1.03582 1.32908 1.47830 0.86290 0.77680 0.84956 0.77931 1.21501 1.21779 1.20389 1.20824 0.95524 0.89607 0.91817 1.22343 0.99370 0.99043 0.97100 1.20710 0.93554 0.86604 0.91394 0.89991 1.22222 1.00969 1.02199 0.97558 1.22808 0.93712 0.96761 0.89369 1.86422 1.37772 1.76651 1.36959 0.92221 0.91439 0.91249 0.78539 0.90101 0.89982 0.77883 0.90341 0.92980 0.92687 0.96166 0.89624 0.93616 0.96264 0.92416 0.92780 0.92031 0.89708 0.90932 0.92568 0.93437 0.91038 0.77804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 9.53 37.16 0.35 -0.80 16 2 C 0.08 0.68 3.86 -26.73 -0.10 0.58 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 4 O -0.55 -4.94 11.64 -35.23 -0.41 -5.35 16 5 C 0.08 0.73 4.92 -4.04 -0.02 0.71 16 6 N -0.61 -7.34 2.24 -171.80 -0.38 -7.72 16 7 C 0.71 11.15 7.63 -86.92 -0.66 10.48 16 8 O -0.58 -11.22 12.22 5.29 0.06 -11.15 16 9 N -0.74 -11.01 4.94 -58.64 -0.29 -11.30 16 10 C 0.17 3.05 2.38 -67.89 -0.16 2.89 16 11 C -0.15 -2.99 5.65 -26.61 -0.15 -3.14 16 12 C 0.18 4.35 5.30 -3.71 -0.02 4.33 16 13 N -0.59 -14.96 2.99 -172.32 -0.51 -15.47 16 14 C -0.26 -7.04 9.57 -15.06 -0.14 -7.19 16 15 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 16 C 0.00 0.12 4.90 -17.43 -0.09 0.04 16 17 N -0.90 -26.58 11.28 55.49 0.63 -25.96 16 18 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 C 0.15 3.12 6.51 -3.71 -0.02 3.09 16 23 C -0.14 -2.35 5.55 -26.61 -0.15 -2.49 16 24 C 0.18 1.99 2.40 -67.93 -0.16 1.83 16 25 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 26 C -0.17 -2.01 9.14 37.15 0.34 -1.67 16 27 C 0.05 0.58 6.31 37.16 0.23 0.82 16 28 O -0.57 -6.18 13.55 -35.23 -0.48 -6.66 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.37 1.94 9.05 45.56 0.41 2.35 16 33 H 0.08 0.66 6.24 -51.93 -0.32 0.34 16 34 H 0.08 0.59 7.91 -51.93 -0.41 0.18 16 35 H 0.39 4.72 6.30 -40.82 -0.26 4.47 16 36 H 0.08 1.59 7.66 -51.93 -0.40 1.19 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 2.37 6.14 -51.93 -0.32 2.05 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.28 6.01 -51.93 -0.31 0.97 16 47 H 0.07 0.89 7.08 -51.93 -0.37 0.52 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.07 1.01 6.27 -51.93 -0.33 0.69 16 51 H 0.38 2.63 9.12 45.56 0.42 3.05 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -34.05 394.75 -8.54 -42.59 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.32 Total: 8.79 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -0.75 Total: 9.48 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.56 Total: -60.45 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.82 Total: -23.16 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.05 -8.54 -42.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116737689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.817 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds