Wall clock time and date at job start Tue Mar 31 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.45835 * 2 1 4 4 C 1.53036 * 109.45437 * 240.02400 * 2 1 3 5 5 C 1.53124 * 109.27753 * 180.80797 * 4 2 1 6 6 C 1.53124 * 109.16086 * 57.65319 * 5 4 2 7 7 H 1.08998 * 109.49924 * 62.32530 * 6 5 4 8 8 N 1.46501 * 109.50378 * 182.40383 * 6 5 4 9 9 C 1.34778 * 120.00028 * 275.00525 * 8 6 5 10 10 O 1.21286 * 119.99559 * 359.97438 * 9 8 6 11 11 C 1.50691 * 119.99912 * 180.02562 * 9 8 6 12 12 C 1.53007 * 109.46985 * 174.99848 * 11 9 8 13 13 C 1.53003 * 109.47321 * 294.99383 * 11 9 8 14 14 F 1.39902 * 109.47306 * 54.99983 * 11 9 8 15 15 C 1.53035 * 109.27675 * 302.34745 * 6 5 4 16 16 N 1.46846 * 109.46340 * 119.97311 * 2 1 3 17 17 C 1.46901 * 111.00341 * 305.84602 * 16 2 1 18 18 C 1.50702 * 109.47227 * 163.93039 * 17 16 2 19 19 O 1.21296 * 119.99778 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99921 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00033 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00244 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00341 * 179.72191 * 21 20 18 24 24 N 1.31419 * 119.99814 * 0.27530 * 23 21 20 25 25 Si 1.86801 * 120.00316 * 180.27508 * 23 21 20 26 26 H 1.48498 * 109.46958 * 59.99931 * 25 23 21 27 27 H 1.48502 * 109.46961 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47034 * 299.99876 * 25 23 21 29 29 H 1.09007 * 109.47553 * 307.47136 * 1 2 3 30 30 H 1.08996 * 109.47254 * 67.47329 * 1 2 3 31 31 H 1.09001 * 109.46960 * 187.47756 * 1 2 3 32 32 H 1.08997 * 109.50202 * 300.75083 * 4 2 1 33 33 H 1.09001 * 109.49895 * 60.86816 * 4 2 1 34 34 H 1.08994 * 109.52330 * 177.55848 * 5 4 2 35 35 H 1.09001 * 109.52217 * 297.68963 * 5 4 2 36 36 H 0.96999 * 119.99790 * 94.99896 * 8 6 5 37 37 H 1.08994 * 109.47115 * 60.00129 * 12 11 9 38 38 H 1.09003 * 109.47066 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.46759 * 299.99533 * 12 11 9 40 40 H 1.08999 * 109.46519 * 60.00258 * 13 11 9 41 41 H 1.08998 * 109.47423 * 179.97438 * 13 11 9 42 42 H 1.08999 * 109.47110 * 300.00577 * 13 11 9 43 43 H 1.09003 * 109.46354 * 299.15865 * 15 6 5 44 44 H 1.09005 * 109.45848 * 179.19635 * 15 6 5 45 45 H 1.09001 * 109.46971 * 43.93128 * 17 16 2 46 46 H 1.09000 * 109.47206 * 283.93401 * 17 16 2 47 47 H 0.97006 * 120.00460 * 359.97438 * 20 18 17 48 48 H 0.96997 * 119.99811 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7210 -1.2500 5 6 3.5707 -0.7363 -1.2357 6 6 4.0546 -1.4190 0.0466 7 1 3.7128 -2.4540 0.0590 8 7 5.5185 -1.3868 0.0955 9 6 6.2348 -2.3422 -0.5295 10 8 5.6674 -3.2289 -1.1319 11 6 7.7405 -2.3094 -0.4787 12 6 8.3010 -3.5626 -1.1544 13 6 8.2485 -1.0652 -1.2102 14 9 8.1614 -2.2708 0.8549 15 6 3.4864 -0.6778 1.2589 16 7 2.0192 -0.6917 1.1994 17 6 1.4375 -0.1104 2.4166 18 6 1.6328 -1.0605 3.5700 19 8 2.2013 -2.1177 3.3952 20 7 1.1760 -0.7356 4.7955 21 6 1.3541 -1.5997 5.8449 22 1 1.8603 -2.5410 5.6894 23 6 0.8882 -1.2621 7.1097 24 7 0.2720 -0.1169 7.2989 25 14 1.1378 -2.4361 8.5411 26 1 2.5906 -2.6676 8.7439 27 1 0.5544 -1.8461 9.7727 28 1 0.4674 -3.7275 8.2448 29 1 -0.3634 0.6252 0.8156 30 1 -0.3633 0.3937 -0.9492 31 1 -0.3633 -1.0189 0.1337 32 1 1.6655 -1.7447 -1.2576 33 1 1.6892 -0.1982 -2.1399 34 1 3.9376 -1.2866 -2.1021 35 1 3.9456 0.2867 -1.2685 36 1 5.9721 -0.6778 0.5775 37 1 7.9731 -3.5926 -2.1934 38 1 9.3901 -3.5390 -1.1173 39 1 7.9391 -4.4489 -0.6333 40 1 7.8491 -0.1725 -0.7288 41 1 9.3375 -1.0412 -1.1731 42 1 7.9204 -1.0953 -2.2492 43 1 3.8404 0.3531 1.2530 44 1 3.8175 -1.1701 2.1734 45 1 0.3720 0.0613 2.2638 46 1 1.9299 0.8364 2.6383 47 1 0.7217 0.1101 4.9354 48 1 -0.0536 0.1185 8.1818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131742476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:46 Heat of formation + Delta-G solvation = -124.518820 kcal Electronic energy + Delta-G solvation = -29395.216536 eV Core-core repulsion = 25206.194661 eV Total energy + Delta-G solvation = -4189.021875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.10168 -40.25648 -39.12276 -37.63985 -35.17930 -33.97424 -33.91341 -32.64079 -31.31818 -31.11716 -27.87695 -27.66151 -26.55696 -24.63296 -23.80886 -22.99268 -21.21570 -20.32800 -19.70958 -19.09078 -18.05400 -17.83406 -16.66005 -16.16519 -16.11151 -15.52946 -15.29534 -14.98018 -14.74636 -14.57227 -14.34376 -14.15908 -13.89190 -13.73363 -13.39774 -13.32973 -13.10207 -12.84805 -12.69496 -12.49560 -12.41264 -12.30406 -12.19619 -11.98339 -11.85452 -11.49122 -11.44824 -11.29137 -11.05920 -10.96322 -10.88298 -10.65746 -10.42411 -10.33932 -10.18412 -9.82651 -9.45433 -9.15188 -8.45585 -7.94995 -7.86379 -6.39460 -3.80025 2.30331 2.79611 3.22008 3.27270 3.32060 3.89677 3.94919 4.07390 4.13201 4.25374 4.40429 4.47217 4.75518 4.86169 4.90444 4.97674 5.09515 5.17553 5.19095 5.26687 5.33583 5.34379 5.44263 5.50179 5.53209 5.57718 5.63939 5.66166 5.75816 5.82915 5.84311 5.89770 6.01083 6.04731 6.11875 6.20553 6.24703 6.29471 6.36928 6.44397 7.22387 7.30262 7.37816 7.57414 7.95837 8.08878 8.64696 9.20945 9.57301 10.09615 10.78330 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.003206 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.667442 B = 8731.827913 C =10620.050505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 H 0.037 0.963 4 C -0.106 4.106 5 C -0.128 4.128 6 C 0.149 3.851 7 H 0.102 0.898 8 N -0.712 5.712 9 C 0.502 3.498 10 O -0.521 6.521 11 C 0.101 3.899 12 C -0.158 4.158 13 C -0.172 4.172 14 F -0.193 7.193 15 C 0.054 3.946 16 N -0.505 5.505 17 C 0.041 3.959 18 C 0.443 3.557 19 O -0.575 6.575 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.904 5.904 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.401 0.599 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.027 0.973 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.047 0.953 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.477 4.697 -18.681 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 H 0.055 0.945 4 C -0.145 4.145 5 C -0.167 4.167 6 C 0.045 3.955 7 H 0.120 0.880 8 N -0.362 5.362 9 C 0.285 3.715 10 O -0.396 6.396 11 C 0.080 3.920 12 C -0.216 4.216 13 C -0.229 4.229 14 F -0.174 7.174 15 C -0.074 4.074 16 N -0.230 5.230 17 C -0.090 4.090 18 C 0.228 3.772 19 O -0.458 6.458 20 N -0.203 5.203 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.235 0.765 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.045 0.955 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.065 0.935 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.205 2.929 -19.042 21.801 hybrid contribution 0.285 1.316 1.385 1.932 sum 10.490 4.245 -17.656 20.971 Atomic orbital electron populations 1.21944 0.94224 1.03163 1.01418 1.21687 0.95650 0.95116 0.90558 0.94477 1.21563 0.94427 1.02037 0.96459 1.21968 0.96343 1.00348 0.98015 1.21022 0.77605 1.02464 0.94450 0.88028 1.45977 1.07620 1.28879 1.53706 1.20737 0.89259 0.81838 0.79647 1.90736 1.71657 1.34982 1.42232 1.21220 0.91474 0.99936 0.79400 1.22167 1.01334 0.95827 1.02223 1.22391 1.03264 0.95737 1.01535 1.92943 1.91028 1.97753 1.35669 1.22287 0.88016 0.97811 0.99316 1.61353 1.06026 1.54787 1.00814 1.21968 1.01096 0.95769 0.90122 1.19776 0.85037 0.88690 0.83649 1.90523 1.46209 1.25457 1.83660 1.41856 1.51520 1.20058 1.06856 1.19646 1.35289 1.01318 0.86489 0.88009 1.25242 0.96808 0.97020 0.98845 1.69605 1.38847 1.21864 1.24197 0.85936 0.78739 0.79937 0.79726 1.19945 1.21012 1.19887 0.92292 0.92278 0.91233 0.90549 0.91302 0.91435 0.92256 0.76483 0.89863 0.90738 0.90553 0.90867 0.90021 0.90003 0.95454 0.88070 0.88532 0.93458 0.77576 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.57 37.15 0.32 -1.41 16 2 C 0.08 0.98 2.44 -67.73 -0.17 0.82 16 3 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -1.21 5.37 -26.65 -0.14 -1.36 16 5 C -0.13 -1.48 5.58 -26.60 -0.15 -1.63 16 6 C 0.15 2.09 2.62 -67.85 -0.18 1.91 16 7 H 0.10 1.78 7.58 -51.93 -0.39 1.39 16 8 N -0.71 -8.71 5.04 -53.73 -0.27 -8.98 16 9 C 0.50 6.56 6.78 -10.99 -0.07 6.48 16 10 O -0.52 -8.47 15.65 5.55 0.09 -8.38 16 11 C 0.10 1.03 1.53 -91.77 -0.14 0.89 16 12 C -0.16 -1.43 8.23 37.16 0.31 -1.13 16 13 C -0.17 -1.16 8.88 37.16 0.33 -0.83 16 14 F -0.19 -2.33 16.79 2.25 0.04 -2.29 16 15 C 0.05 0.84 4.58 -3.83 -0.02 0.82 16 16 N -0.50 -8.17 4.12 -228.12 -0.94 -9.11 16 17 C 0.04 0.73 5.26 -4.97 -0.03 0.70 16 18 C 0.44 10.38 7.47 -10.99 -0.08 10.30 16 19 O -0.57 -15.51 14.42 5.54 0.08 -15.43 16 20 N -0.57 -14.29 5.29 -10.96 -0.06 -14.34 16 21 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 24 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 25 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 29 H 0.06 0.67 6.44 -51.92 -0.33 0.34 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.40 4.06 8.38 -40.82 -0.34 3.72 16 37 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.45 7.92 -51.93 -0.41 0.04 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 1.94 6.35 -51.93 -0.33 1.61 16 45 H 0.10 1.54 5.55 -51.93 -0.29 1.25 16 46 H 0.05 0.76 8.05 -51.93 -0.42 0.34 16 47 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -32.90 387.12 -7.63 -40.54 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -7.84 Total: 12.24 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.26 Total: 7.60 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.54 Total: -56.32 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.17 Total: -23.82 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.90 -7.63 -40.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131742476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.984 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds