Wall clock time and date at job start Tue Mar 31 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.45153 * 2 1 4 4 C 1.53037 * 109.46289 * 240.02273 * 2 1 3 5 5 C 1.53115 * 109.27499 * 180.80246 * 4 2 1 6 6 C 1.53120 * 109.16250 * 57.65825 * 5 4 2 7 7 H 1.09003 * 109.50600 * 182.40367 * 6 5 4 8 8 N 1.46504 * 109.50381 * 62.28180 * 6 5 4 9 9 C 1.34769 * 119.99851 * 85.00632 * 8 6 5 10 10 O 1.21280 * 120.00221 * 359.97438 * 9 8 6 11 11 C 1.50709 * 119.99891 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.47058 * 174.99485 * 11 9 8 13 13 C 1.52990 * 109.46861 * 294.99693 * 11 9 8 14 14 F 1.39898 * 109.46780 * 54.99876 * 11 9 8 15 15 C 1.53040 * 109.27574 * 302.34365 * 6 5 4 16 16 N 1.46847 * 109.52808 * 59.17785 * 15 6 5 17 17 C 1.46894 * 111.00418 * 174.16116 * 16 15 6 18 18 C 1.50704 * 109.46890 * 288.16504 * 17 16 15 19 19 O 1.21287 * 120.00232 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99712 * 179.97438 * 18 17 16 21 21 C 1.37091 * 119.99920 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00271 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00003 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00256 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99956 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47389 * 59.99970 * 25 23 21 27 27 H 1.48506 * 109.47226 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47018 * 299.99595 * 25 23 21 29 29 H 1.09005 * 109.46701 * 187.38362 * 1 2 3 30 30 H 1.09004 * 109.47185 * 307.38025 * 1 2 3 31 31 H 1.09000 * 109.47099 * 67.38352 * 1 2 3 32 32 H 1.08995 * 109.50034 * 60.86137 * 4 2 1 33 33 H 1.08996 * 109.50011 * 300.74346 * 4 2 1 34 34 H 1.08999 * 109.51958 * 177.55821 * 5 4 2 35 35 H 1.09000 * 109.52762 * 297.74862 * 5 4 2 36 36 H 0.97005 * 119.99562 * 264.99962 * 8 6 5 37 37 H 1.08998 * 109.46991 * 60.00351 * 12 11 9 38 38 H 1.09002 * 109.46838 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.47575 * 300.00021 * 12 11 9 40 40 H 1.08998 * 109.47477 * 60.00121 * 13 11 9 41 41 H 1.09002 * 109.46961 * 179.97438 * 13 11 9 42 42 H 1.08998 * 109.47435 * 299.99801 * 13 11 9 43 43 H 1.08997 * 109.46360 * 299.16181 * 15 6 5 44 44 H 1.08998 * 109.45409 * 179.19230 * 15 6 5 45 45 H 1.09000 * 109.46945 * 48.16322 * 17 16 15 46 46 H 1.08997 * 109.47363 * 168.16438 * 17 16 15 47 47 H 0.97007 * 119.99937 * 359.97438 * 20 18 17 48 48 H 0.96996 * 120.00405 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7210 -1.2499 5 6 3.5710 -0.7360 -1.2355 6 6 4.0548 -1.4187 0.0469 7 1 5.1440 -1.3945 0.0834 8 7 3.5948 -2.8095 0.0641 9 6 4.3121 -3.7643 -0.5606 10 8 5.3381 -3.4721 -1.1374 11 6 3.8391 -5.1951 -0.5424 12 6 4.7573 -6.0469 -1.4211 13 6 3.8713 -5.7246 0.8926 14 9 2.5311 -5.2601 -1.0344 15 6 3.4864 -0.6775 1.2592 16 7 2.0193 -0.6916 1.1995 17 6 1.4372 -0.1104 2.4166 18 6 1.6331 -1.0602 3.5701 19 8 2.2012 -2.1174 3.3954 20 7 1.1770 -0.7347 4.7959 21 6 1.3547 -1.5989 5.8452 22 1 1.8598 -2.5408 5.6895 23 6 0.8840 -1.2637 7.1088 24 7 0.2689 -0.1179 7.2982 25 14 1.1255 -2.4416 8.5383 26 1 2.5770 -2.6761 8.7468 27 1 0.5379 -1.8536 9.7689 28 1 0.4541 -3.7312 8.2360 29 1 -0.3633 -1.0192 0.1321 30 1 -0.3634 0.6239 0.8166 31 1 -0.3633 0.3952 -0.9486 32 1 1.6895 -0.1983 -2.1398 33 1 1.6660 -1.7447 -1.2574 34 1 3.9379 -1.2863 -2.1018 35 1 3.9457 0.2871 -1.2672 36 1 2.7739 -3.0432 0.5252 37 1 5.7764 -5.9963 -1.0379 38 1 4.4150 -7.0817 -1.4083 39 1 4.7345 -5.6697 -2.4435 40 1 3.2171 -5.1178 1.5186 41 1 3.5288 -6.7593 0.9058 42 1 4.8904 -5.6739 1.2758 43 1 3.8403 0.3534 1.2533 44 1 3.8175 -1.1698 2.1736 45 1 1.9293 0.8367 2.6381 46 1 0.3717 0.0608 2.2638 47 1 0.7230 0.1111 4.9357 48 1 -0.0600 0.1160 8.1802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131742478.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:51 Heat of formation + Delta-G solvation = -126.098706 kcal Electronic energy + Delta-G solvation = -30193.479163 eV Core-core repulsion = 26004.388779 eV Total energy + Delta-G solvation = -4189.090384 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.88062 -40.26023 -38.96601 -37.66275 -34.85272 -33.96466 -33.68741 -32.53980 -31.29153 -31.10993 -27.76607 -27.50177 -26.61152 -24.64271 -23.83447 -22.98679 -21.19462 -20.13223 -19.27540 -19.07456 -17.96265 -17.82603 -16.33479 -16.12771 -15.95616 -15.52828 -15.26703 -14.90577 -14.68963 -14.53163 -14.27384 -14.11477 -13.81839 -13.53281 -13.25982 -13.11943 -13.00841 -12.84649 -12.48326 -12.43372 -12.15219 -12.14023 -12.04009 -11.93702 -11.84532 -11.58345 -11.52407 -11.38042 -11.06069 -11.02096 -10.77054 -10.55698 -10.46598 -10.24667 -10.10212 -9.67212 -9.49370 -8.94888 -8.48235 -7.99641 -7.91126 -6.43671 -3.84482 2.52483 3.11779 3.17819 3.24065 3.27766 3.86148 3.91022 4.20178 4.36514 4.41712 4.61940 4.74174 4.78556 4.80763 4.95698 4.99915 5.21217 5.23525 5.37817 5.39665 5.42357 5.52295 5.53679 5.55744 5.57624 5.65417 5.78840 5.81382 5.85713 5.90915 5.93611 5.94554 6.02734 6.05573 6.07225 6.21491 6.23351 6.30169 6.38508 6.61039 7.20632 7.34693 7.52681 7.65586 8.03948 8.23054 8.59633 9.16055 9.52819 10.04132 10.74020 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.011802 B = 0.003755 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.969829 B = 7454.868515 C = 9042.480491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.038 0.962 4 C -0.108 4.108 5 C -0.132 4.132 6 C 0.153 3.847 7 H 0.089 0.911 8 N -0.690 5.690 9 C 0.499 3.501 10 O -0.541 6.541 11 C 0.103 3.897 12 C -0.155 4.155 13 C -0.175 4.175 14 F -0.196 7.196 15 C 0.047 3.953 16 N -0.510 5.510 17 C 0.040 3.960 18 C 0.445 3.555 19 O -0.579 6.579 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.419 0.581 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.103 0.897 45 H 0.047 0.953 46 H 0.095 0.905 47 H 0.391 0.609 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -1.927 -15.671 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 H 0.056 0.944 4 C -0.146 4.146 5 C -0.171 4.171 6 C 0.047 3.953 7 H 0.107 0.893 8 N -0.342 5.342 9 C 0.282 3.718 10 O -0.418 6.418 11 C 0.082 3.918 12 C -0.213 4.213 13 C -0.233 4.233 14 F -0.177 7.177 15 C -0.081 4.081 16 N -0.236 5.236 17 C -0.091 4.091 18 C 0.230 3.770 19 O -0.463 6.463 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.257 0.743 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.121 0.879 45 H 0.066 0.934 46 H 0.113 0.887 47 H 0.224 0.776 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.402 -2.811 -16.037 16.866 hybrid contribution -0.512 0.851 1.197 1.555 sum 3.890 -1.960 -14.839 15.466 Atomic orbital electron populations 1.21943 0.94350 1.03020 1.01389 1.21667 0.95481 0.95225 0.90523 0.94401 1.21587 0.95048 1.01675 0.96330 1.21985 0.96360 1.00580 0.98164 1.20982 0.98995 0.80735 0.94539 0.89345 1.45959 1.27640 1.07024 1.53528 1.20772 0.84590 0.87311 0.79102 1.90680 1.24626 1.82446 1.44079 1.21185 0.79523 0.94042 0.97080 1.22143 0.99839 0.99091 1.00231 1.22414 1.04750 1.03104 0.93018 1.92911 1.38089 1.97305 1.89365 1.22455 0.87720 0.98547 0.99385 1.61453 1.06593 1.54735 1.00787 1.21968 1.01088 0.95875 0.90193 1.19746 0.84981 0.88664 0.83613 1.90470 1.46490 1.25546 1.83769 1.41863 1.51370 1.20015 1.06873 1.19619 1.35311 1.01312 0.86544 0.88004 1.25241 0.96749 0.96998 0.98879 1.69597 1.38653 1.21835 1.24292 0.85945 0.78697 0.79937 0.79792 1.19970 1.21006 1.19908 0.91362 0.92325 0.92369 0.91708 0.90901 0.91388 0.91343 0.74256 0.89954 0.90906 0.91010 0.89764 0.90313 0.90158 0.94121 0.87929 0.93449 0.88680 0.77574 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.57 37.16 0.32 -1.35 16 2 C 0.08 0.96 2.44 -67.72 -0.17 0.79 16 3 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -1.24 5.20 -26.65 -0.14 -1.38 16 5 C -0.13 -1.57 5.67 -26.61 -0.15 -1.72 16 6 C 0.15 2.08 2.81 -67.85 -0.19 1.89 16 7 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 8 N -0.69 -9.94 4.37 -53.72 -0.23 -10.18 16 9 C 0.50 7.29 6.78 -10.98 -0.07 7.21 16 10 O -0.54 -9.00 15.65 5.56 0.09 -8.91 16 11 C 0.10 1.30 1.53 -91.77 -0.14 1.16 16 12 C -0.16 -1.64 8.23 37.16 0.31 -1.34 16 13 C -0.18 -2.03 8.88 37.15 0.33 -1.70 16 14 F -0.20 -2.70 16.79 2.25 0.04 -2.66 16 15 C 0.05 0.69 4.70 -3.83 -0.02 0.67 16 16 N -0.51 -7.54 3.60 -228.12 -0.82 -8.36 16 17 C 0.04 0.65 5.26 -4.98 -0.03 0.63 16 18 C 0.44 9.73 7.47 -10.98 -0.08 9.65 16 19 O -0.58 -14.13 14.42 5.55 0.08 -14.05 16 20 N -0.56 -13.63 5.29 -10.96 -0.06 -13.69 16 21 C -0.30 -8.01 9.68 -14.94 -0.14 -8.15 16 22 H 0.10 2.86 7.16 -52.49 -0.38 2.48 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16 25 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.93 7.72 -51.93 -0.40 0.53 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.42 6.50 7.96 -40.82 -0.32 6.18 16 37 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 1.83 6.35 -51.93 -0.33 1.50 16 45 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 46 H 0.10 1.44 5.55 -51.93 -0.29 1.15 16 47 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -29.67 385.31 -7.48 -37.15 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -7.80 Total: 15.75 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -0.27 Total: 6.87 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.39 Total: -55.56 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.67 -7.48 -37.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131742478.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.953 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds