Wall clock time and date at job start Tue Mar 31 2020 05:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.45669 * 2 1 4 4 C 1.53035 * 109.46442 * 119.97526 * 2 1 3 5 5 C 1.53112 * 109.28000 * 179.18716 * 4 2 1 6 6 C 1.53125 * 109.16034 * 302.34886 * 5 4 2 7 7 H 1.08994 * 109.50008 * 297.66969 * 6 5 4 8 8 N 1.46506 * 109.50082 * 177.59334 * 6 5 4 9 9 C 1.34777 * 119.99794 * 84.80567 * 8 6 5 10 10 O 1.21286 * 120.00336 * 0.26993 * 9 8 6 11 11 C 1.50701 * 119.99813 * 180.27418 * 9 8 6 12 12 C 1.53005 * 109.46864 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46848 * 299.99556 * 11 9 8 14 14 F 1.39896 * 109.47145 * 59.99945 * 11 9 8 15 15 C 1.53034 * 109.31016 * 57.63527 * 6 5 4 16 16 N 1.46843 * 109.45759 * 240.02781 * 2 1 3 17 17 C 1.46902 * 110.99916 * 54.14380 * 16 2 1 18 18 C 1.50704 * 109.47445 * 196.06866 * 17 16 2 19 19 O 1.21296 * 119.99690 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00041 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99346 * 180.02562 * 20 18 17 22 22 H 1.07990 * 120.00574 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99259 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99523 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00234 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47323 * 90.00290 * 25 23 21 27 27 H 1.48506 * 109.46967 * 210.00113 * 25 23 21 28 28 H 1.48502 * 109.46974 * 329.99684 * 25 23 21 29 29 H 1.09001 * 109.47342 * 292.56239 * 1 2 3 30 30 H 1.09001 * 109.47475 * 52.56764 * 1 2 3 31 31 H 1.09005 * 109.46629 * 172.56515 * 1 2 3 32 32 H 1.09005 * 109.50441 * 59.24624 * 4 2 1 33 33 H 1.08998 * 109.53650 * 299.15041 * 4 2 1 34 34 H 1.08997 * 109.52659 * 182.44059 * 5 4 2 35 35 H 1.09006 * 109.57474 * 62.28200 * 5 4 2 36 36 H 0.97000 * 120.00276 * 265.07632 * 8 6 5 37 37 H 1.08997 * 109.47348 * 59.99960 * 12 11 9 38 38 H 1.09004 * 109.46477 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.46933 * 299.99730 * 12 11 9 40 40 H 1.08999 * 109.47019 * 60.00593 * 13 11 9 41 41 H 1.09004 * 109.47216 * 179.97438 * 13 11 9 42 42 H 1.08997 * 109.47409 * 300.00068 * 13 11 9 43 43 H 1.08997 * 109.46532 * 60.85341 * 15 6 5 44 44 H 1.09003 * 109.45986 * 180.82409 * 15 6 5 45 45 H 1.08998 * 109.47273 * 316.07070 * 17 16 2 46 46 H 1.09000 * 109.47248 * 76.07290 * 17 16 2 47 47 H 0.96995 * 120.00514 * 0.02562 * 20 18 17 48 48 H 0.96998 * 119.99681 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5709 -0.7362 1.2354 6 6 4.0546 -1.4190 -0.0470 7 1 3.7128 -2.4539 -0.0593 8 7 5.5185 -1.3867 -0.0961 9 6 6.2349 -2.3399 0.5320 10 8 5.6678 -3.2272 1.1337 11 6 7.7408 -2.3032 0.4868 12 6 8.3037 -3.4888 1.2732 13 6 8.2094 -2.3865 -0.9673 14 9 8.1955 -1.1088 1.0557 15 6 3.4863 -0.6786 -1.2598 16 7 2.0191 -0.6917 -1.1994 17 6 1.4370 -0.1105 -2.4165 18 6 1.6322 -1.0605 -3.5700 19 8 2.2000 -2.1180 -3.3952 20 7 1.1760 -0.7351 -4.7957 21 6 1.3532 -1.5997 -5.8448 22 1 1.8586 -2.5412 -5.6893 23 6 0.8832 -1.2639 -7.1086 24 7 1.0535 -2.0924 -8.1144 25 14 0.0095 0.3650 -7.3779 26 1 1.0038 1.4056 -7.7434 27 1 -0.9811 0.2199 -8.4748 28 1 -0.6890 0.7643 -6.1297 29 1 -0.3634 0.3943 0.9490 30 1 -0.3634 0.6246 -0.8160 31 1 -0.3633 -1.0191 -0.1330 32 1 1.6658 -1.7447 1.2576 33 1 1.6896 -0.1988 2.1402 34 1 3.9379 -1.2865 2.1018 35 1 3.9467 0.2865 1.2675 36 1 5.9721 -0.6771 -0.5773 37 1 7.9495 -4.4197 0.8304 38 1 9.3929 -3.4625 1.2401 39 1 7.9698 -3.4290 2.3090 40 1 7.8085 -1.5416 -1.5272 41 1 9.2986 -2.3595 -1.0001 42 1 7.8552 -3.3171 -1.4105 43 1 3.8402 0.3523 -1.2546 44 1 3.8172 -1.1715 -2.1740 45 1 0.3716 0.0612 -2.2635 46 1 1.9294 0.8363 -2.6384 47 1 0.7223 0.1107 -4.9355 48 1 0.7257 -1.8579 -8.9967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131742480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:56 Heat of formation + Delta-G solvation = -117.678675 kcal Electronic energy + Delta-G solvation = -29450.502327 eV Core-core repulsion = 25261.777062 eV Total energy + Delta-G solvation = -4188.725264 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.15622 -40.29944 -39.21267 -37.82151 -35.22343 -34.03505 -33.94189 -32.71726 -31.67057 -31.28163 -27.93238 -27.73582 -26.62656 -24.57238 -23.83088 -22.97506 -21.23529 -20.37589 -19.71099 -19.32200 -18.28154 -18.08390 -16.68405 -16.19329 -16.15150 -15.55068 -15.35057 -15.09211 -14.87334 -14.74562 -14.41692 -14.15258 -13.95718 -13.66509 -13.43236 -13.32630 -13.02707 -12.78514 -12.69591 -12.56219 -12.47368 -12.38210 -12.27925 -12.20071 -11.94820 -11.90581 -11.57473 -11.29625 -11.21229 -11.02058 -10.93442 -10.74017 -10.60865 -10.38239 -9.98343 -9.85640 -9.55390 -9.17574 -8.60186 -8.18493 -7.99468 -6.31651 -3.82949 2.29375 2.76282 3.01226 3.04983 3.13803 3.73792 3.83464 4.08392 4.09623 4.15380 4.36344 4.51367 4.68205 4.76485 4.81562 4.87845 5.03002 5.17704 5.20294 5.25036 5.27075 5.36098 5.39042 5.44946 5.50051 5.52615 5.62368 5.64448 5.71742 5.76458 5.82595 5.83745 5.92334 5.92606 5.98365 6.06303 6.15710 6.18565 6.30974 6.39335 7.11009 7.25879 7.27831 7.58279 7.94004 8.14220 8.60153 8.95180 9.42273 9.83795 10.81591 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.012918 B = 0.003157 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.980002 B = 8866.333082 C =10416.609703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 H 0.038 0.962 4 C -0.106 4.106 5 C -0.129 4.129 6 C 0.149 3.851 7 H 0.103 0.897 8 N -0.712 5.712 9 C 0.503 3.497 10 O -0.520 6.520 11 C 0.102 3.898 12 C -0.157 4.157 13 C -0.175 4.175 14 F -0.196 7.196 15 C 0.054 3.946 16 N -0.505 5.505 17 C 0.038 3.962 18 C 0.453 3.547 19 O -0.557 6.557 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.401 0.599 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.028 0.972 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.049 0.951 47 H 0.369 0.631 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.734 7.420 17.978 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 H 0.056 0.944 4 C -0.145 4.145 5 C -0.168 4.168 6 C 0.045 3.955 7 H 0.121 0.879 8 N -0.363 5.363 9 C 0.286 3.714 10 O -0.395 6.395 11 C 0.081 3.919 12 C -0.215 4.215 13 C -0.233 4.233 14 F -0.177 7.177 15 C -0.075 4.075 16 N -0.230 5.230 17 C -0.093 4.093 18 C 0.238 3.762 19 O -0.438 6.438 20 N -0.233 5.233 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.705 3.295 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.235 0.765 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.046 0.954 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.067 0.933 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.522 5.534 18.338 20.965 hybrid contribution -0.259 2.668 -0.791 2.795 sum 8.263 8.202 17.547 21.058 Atomic orbital electron populations 1.21950 0.94220 1.03177 1.01429 1.21693 0.95620 0.95166 0.90501 0.94396 1.21558 0.94480 1.02046 0.96379 1.21973 0.96229 1.00490 0.98109 1.21015 0.77675 1.02467 0.94377 0.87916 1.45980 1.07567 1.28753 1.53957 1.20737 0.89272 0.82177 0.79242 1.90739 1.71738 1.35225 1.41786 1.21228 0.91081 0.83486 0.96121 1.22164 1.01339 0.96662 1.01355 1.22428 1.03438 1.04811 0.92589 1.92909 1.90031 1.48165 1.86614 1.22299 0.87879 0.97939 0.99371 1.61327 1.06166 1.54802 1.00697 1.22005 1.01271 0.95738 0.90280 1.19680 0.84662 0.88700 0.83164 1.90557 1.44964 1.25013 1.83275 1.42220 1.53282 1.19291 1.08488 1.19418 1.36054 1.02057 0.85676 0.86303 1.25032 0.97869 0.97920 0.95356 1.69621 1.46008 1.35779 1.00828 0.86685 0.80213 0.83906 0.78653 1.19717 1.20202 1.19489 0.92181 0.92427 0.91151 0.90501 0.91252 0.91370 0.92209 0.76497 0.89746 0.90727 0.90689 0.90720 0.90026 0.89606 0.95357 0.88035 0.88417 0.93318 0.79808 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.57 37.16 0.32 -1.30 16 2 C 0.08 0.93 2.44 -67.73 -0.17 0.77 16 3 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.11 -1.18 5.37 -26.66 -0.14 -1.33 16 5 C -0.13 -1.51 5.58 -26.61 -0.15 -1.66 16 6 C 0.15 2.02 2.61 -67.85 -0.18 1.84 16 7 H 0.10 1.73 7.58 -51.93 -0.39 1.34 16 8 N -0.71 -8.47 4.97 -53.72 -0.27 -8.74 16 9 C 0.50 6.49 6.84 -10.98 -0.08 6.41 16 10 O -0.52 -8.40 15.65 5.55 0.09 -8.32 16 11 C 0.10 1.03 1.54 -91.77 -0.14 0.89 16 12 C -0.16 -1.42 8.22 37.16 0.31 -1.11 16 13 C -0.18 -1.43 8.83 37.16 0.33 -1.10 16 14 F -0.20 -2.12 16.79 2.25 0.04 -2.08 16 15 C 0.05 0.78 4.58 -3.84 -0.02 0.76 16 16 N -0.50 -7.70 4.12 -228.13 -0.94 -8.64 16 17 C 0.04 0.62 5.26 -4.97 -0.03 0.59 16 18 C 0.45 9.98 7.47 -10.98 -0.08 9.89 16 19 O -0.56 -14.50 14.42 5.54 0.08 -14.42 16 20 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 21 C -0.30 -8.45 10.16 -14.93 -0.15 -8.61 16 22 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 25 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 28 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.59 6.44 -51.93 -0.33 0.26 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.40 3.88 8.02 -40.82 -0.33 3.55 16 37 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.07 0.58 7.56 -51.93 -0.39 0.18 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 1.81 6.35 -51.93 -0.33 1.48 16 45 H 0.10 1.40 5.55 -51.93 -0.29 1.11 16 46 H 0.05 0.69 8.05 -51.93 -0.42 0.27 16 47 H 0.37 7.55 5.76 -40.82 -0.24 7.32 16 48 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -33.45 383.20 -7.26 -40.71 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -7.77 Total: 12.92 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -0.27 Total: 7.08 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.49 Total: -56.06 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.17 Total: -22.74 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.45 -7.26 -40.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131742480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.971 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds