Wall clock time and date at job start Tue Mar 31 2020 05:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 114.00080 * 2 1 4 4 H 1.09001 * 109.46992 * 327.30007 * 3 2 1 5 5 C 1.50703 * 109.46599 * 87.29627 * 3 2 1 6 6 O 1.21280 * 120.00579 * 4.99605 * 5 3 2 7 7 N 1.34777 * 119.99777 * 185.00087 * 5 3 2 8 8 C 1.46499 * 120.00006 * 179.72376 * 7 5 3 9 9 C 1.53007 * 109.47058 * 180.27316 * 8 7 5 10 10 N 1.46900 * 109.47050 * 179.97438 * 9 8 7 11 11 C 1.46890 * 111.00128 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47412 * 180.02562 * 11 10 9 13 13 O 1.21293 * 119.99650 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99911 * 180.02562 * 12 11 10 15 15 C 1.37101 * 119.99393 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00499 * 359.97438 * 15 14 12 17 17 C 1.38954 * 119.99646 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00043 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99954 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47186 * 59.99998 * 19 17 15 21 21 H 1.48501 * 109.47195 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47368 * 300.00161 * 19 17 15 23 23 C 1.52991 * 109.47194 * 207.29364 * 3 2 1 24 24 H 1.09006 * 110.80347 * 186.70842 * 23 3 2 25 25 C 1.54810 * 110.90929 * 63.08137 * 23 3 2 26 26 C 1.54098 * 104.18924 * 220.92023 * 25 23 3 27 27 O 1.43746 * 107.29470 * 357.96747 * 26 25 23 28 28 C 1.44378 * 106.97352 * 26.51632 * 27 26 25 29 29 H 1.08998 * 109.46844 * 184.91240 * 1 2 3 30 30 H 1.09002 * 109.46964 * 304.91693 * 1 2 3 31 31 H 1.09002 * 109.46929 * 64.91292 * 1 2 3 32 32 H 0.97003 * 120.00224 * 0.02562 * 7 5 3 33 33 H 1.08996 * 109.47293 * 300.27362 * 8 7 5 34 34 H 1.08998 * 109.47285 * 60.27579 * 8 7 5 35 35 H 1.08996 * 109.47106 * 300.00160 * 9 8 7 36 36 H 1.09006 * 109.46677 * 60.00247 * 9 8 7 37 37 H 1.00904 * 111.00002 * 303.95851 * 10 9 8 38 38 H 1.09006 * 109.47100 * 299.99882 * 11 10 9 39 39 H 1.09002 * 109.47414 * 59.99860 * 11 10 9 40 40 H 0.96999 * 120.00117 * 359.97438 * 14 12 11 41 41 H 0.96993 * 120.00464 * 179.97438 * 18 17 15 42 42 H 1.09001 * 110.48690 * 339.59672 * 25 23 3 43 43 H 1.09000 * 110.49083 * 102.11089 * 25 23 3 44 44 H 1.09003 * 109.87951 * 117.39020 * 26 25 23 45 45 H 1.09000 * 109.87990 * 238.54568 * 26 25 23 46 46 H 1.08997 * 110.61723 * 201.44007 * 28 27 26 47 47 H 1.08995 * 110.62553 * 78.43540 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3681 1.9891 -0.5552 5 6 2.1534 1.7915 1.4193 6 8 1.8781 1.0555 2.3431 7 7 2.5871 3.0443 1.6621 8 6 2.7204 3.5188 3.0416 9 6 3.2206 4.9648 3.0375 10 7 3.3537 5.4409 4.4208 11 6 3.8323 6.8292 4.4560 12 6 3.9568 7.2815 5.8882 13 8 3.6740 6.5221 6.7907 14 7 4.3813 8.5302 6.1660 15 6 4.4950 8.9414 7.4689 16 1 4.2440 8.2651 8.2726 17 6 4.9332 10.2286 7.7554 18 7 5.2391 11.0514 6.7776 19 14 5.0874 10.7892 9.5306 20 1 6.0526 9.9145 10.2438 21 1 5.5708 12.1929 9.5662 22 1 3.7610 10.7060 10.1930 23 6 3.3887 1.2500 -0.6614 24 1 3.9016 2.2073 -0.5683 25 6 3.2725 0.8276 -2.1463 26 6 4.4524 -0.1408 -2.3570 27 8 5.1798 -0.2040 -1.1188 28 6 4.2434 0.1033 -0.0637 29 1 -0.3633 -1.0239 0.0880 30 1 -0.3633 0.5882 0.8427 31 1 -0.3633 0.4357 -0.9307 32 1 2.8068 3.6332 0.9232 33 1 1.7510 3.4712 3.5375 34 1 3.4327 2.8896 3.5751 35 1 4.1900 5.0125 2.5415 36 1 2.5081 5.5941 2.5040 37 1 2.4826 5.3463 4.9212 38 1 4.8063 6.8901 3.9702 39 1 3.1242 7.4711 3.9321 40 1 4.6071 9.1376 5.4442 41 1 5.5446 11.9500 6.9775 42 1 2.3250 0.3193 -2.3252 43 1 3.3677 1.6958 -2.7984 44 1 4.0775 -1.1307 -2.6175 45 1 5.1013 0.2324 -3.1494 46 1 4.7689 0.4416 0.8293 47 1 3.6205 -0.7625 0.1611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131881864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:10 Heat of formation + Delta-G solvation = -160.298458 kcal Electronic energy + Delta-G solvation = -27669.257733 eV Core-core repulsion = 23466.311546 eV Total energy + Delta-G solvation = -4202.946186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85580 -39.30126 -38.36693 -37.75410 -36.26539 -34.51142 -33.83332 -33.26653 -31.26487 -30.46885 -29.37381 -27.54869 -26.67903 -25.59630 -23.90283 -23.15065 -22.18994 -21.51104 -20.54269 -19.31771 -18.12884 -17.88298 -17.40499 -16.86303 -16.58169 -16.22185 -15.92470 -15.83011 -15.30718 -15.15565 -14.87841 -14.77765 -14.54015 -14.12817 -14.04991 -13.82452 -13.58189 -13.44858 -13.16408 -12.99671 -12.47595 -12.24369 -12.02709 -11.95490 -11.81574 -11.55484 -11.50421 -11.48475 -11.31765 -11.15074 -11.02763 -10.96659 -10.45453 -10.23381 -10.01786 -9.66186 -9.52255 -9.35787 -8.53714 -8.16756 -7.98878 -6.43857 -3.84784 2.22438 2.62202 3.19180 3.21143 3.24994 3.29695 3.54483 3.86651 3.87904 4.07944 4.19525 4.32411 4.36764 4.40092 4.59905 4.67877 4.81191 4.86828 4.89691 4.90856 4.94492 5.03255 5.13978 5.23441 5.27551 5.30262 5.32442 5.34654 5.48854 5.50486 5.66754 5.68226 5.75955 5.85247 5.90553 6.08103 6.22080 6.45449 6.50191 7.04103 7.15509 7.52249 7.53319 7.87801 8.03550 8.58507 9.15494 9.51234 10.02588 10.73742 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.025122 B = 0.001692 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.286594 B =16545.730230 C =17098.953377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.084 3.916 4 H 0.091 0.909 5 C 0.487 3.513 6 O -0.517 6.517 7 N -0.726 5.726 8 C 0.119 3.881 9 C 0.050 3.950 10 N -0.665 5.665 11 C 0.053 3.947 12 C 0.439 3.561 13 O -0.582 6.582 14 N -0.563 5.563 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.932 3.068 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.117 4.117 24 H 0.103 0.897 25 C -0.148 4.148 26 C 0.049 3.951 27 O -0.377 6.377 28 C 0.056 3.944 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.399 0.601 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.352 0.648 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 -16.659 -23.854 29.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.022 3.978 4 H 0.109 0.891 5 C 0.272 3.728 6 O -0.392 6.392 7 N -0.381 5.381 8 C -0.004 4.004 9 C -0.081 4.081 10 N -0.298 5.298 11 C -0.080 4.080 12 C 0.224 3.776 13 O -0.466 6.466 14 N -0.199 5.199 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.759 3.241 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.136 4.136 24 H 0.121 0.879 25 C -0.185 4.185 26 C -0.028 4.028 27 O -0.296 6.296 28 C -0.021 4.021 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.233 0.767 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.172 0.828 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.111 0.889 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.557 -18.016 -22.430 29.507 hybrid contribution -0.921 1.967 -0.273 2.190 sum -7.479 -16.049 -22.703 28.791 Atomic orbital electron populations 1.22889 0.80225 1.03602 1.00056 1.87978 1.20342 1.24409 1.94356 1.21878 0.96145 0.87281 0.92499 0.89129 1.21274 0.77657 0.81809 0.92105 1.90759 1.48142 1.54752 1.45536 1.45975 1.68305 1.14358 1.09419 1.21313 1.02172 0.95015 0.81937 1.22081 1.00768 0.93800 0.91408 1.59930 1.37099 1.21187 1.11634 1.21671 1.00907 0.88357 0.97076 1.19770 0.84736 0.83378 0.89672 1.90536 1.54800 1.53977 1.47311 1.41849 1.58022 1.11209 1.08836 1.19667 1.41837 0.97464 0.84028 0.87924 1.25270 0.97029 0.95824 0.99808 1.69599 1.45172 1.07588 1.31965 0.85902 0.78887 0.77441 0.81902 1.19839 1.20972 1.19913 1.22871 0.93437 1.01700 0.95582 0.87882 1.22965 1.00272 1.00253 0.95043 1.23118 0.93079 0.98753 0.87875 1.88892 1.33663 1.91765 1.15313 1.23555 0.90854 0.96637 0.91039 0.89003 0.93412 0.93879 0.76694 0.91315 0.90002 0.90381 0.94961 0.82805 0.89435 0.93725 0.77450 0.91799 0.89805 0.90131 0.92230 0.89848 0.88916 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.76 101.05 1.09 1.27 16 2 O -0.35 -3.11 8.09 -55.09 -0.45 -3.56 16 3 C 0.08 0.60 2.22 -27.89 -0.06 0.54 16 4 H 0.09 0.41 7.86 -51.93 -0.41 0.00 16 5 C 0.49 4.93 6.69 -10.98 -0.07 4.86 16 6 O -0.52 -7.62 16.47 -14.30 -0.24 -7.86 16 7 N -0.73 -5.99 5.46 -60.29 -0.33 -6.32 16 8 C 0.12 1.28 5.93 -4.04 -0.02 1.25 16 9 C 0.05 0.53 5.80 -3.82 -0.02 0.51 16 10 N -0.67 -10.25 6.13 -115.05 -0.70 -10.95 16 11 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 12 C 0.44 10.25 7.82 -10.98 -0.09 10.16 16 13 O -0.58 -15.79 15.78 5.55 0.09 -15.71 16 14 N -0.56 -14.12 5.29 -10.96 -0.06 -14.17 16 15 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 16 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 19 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 C -0.12 -0.76 2.95 -88.61 -0.26 -1.02 16 24 H 0.10 0.52 7.84 -51.93 -0.41 0.12 16 25 C -0.15 -0.76 6.51 -25.20 -0.16 -0.92 16 26 C 0.05 0.33 7.70 37.73 0.29 0.62 16 27 O -0.38 -3.82 11.52 -35.23 -0.41 -4.22 16 28 C 0.06 0.51 6.79 38.21 0.26 0.77 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.36 8.03 -51.93 -0.42 -0.05 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.40 2.03 8.23 -40.82 -0.34 1.70 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.35 5.64 8.43 -39.29 -0.33 5.31 16 38 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.08 0.41 7.45 -51.93 -0.39 0.02 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 0.81 7.03 -51.93 -0.37 0.45 16 LS Contribution 393.13 15.07 5.92 5.92 Total: -1.00 -35.17 393.13 -7.35 -42.53 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -7.56 Total: 11.06 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 0.67 Total: 10.91 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.37 Total: -55.04 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.00 Total: -31.35 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.17 -7.35 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131881864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.772 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds