Wall clock time and date at job start Tue Mar 31 2020 04:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.50702 * 110.45811 * 57.39400 * 4 3 2 6 6 O 1.21286 * 119.99992 * 120.69864 * 5 4 3 7 7 N 1.34774 * 120.00266 * 300.70317 * 5 4 3 8 8 C 1.46493 * 120.00260 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47290 * 179.97438 * 8 7 5 10 10 N 1.46894 * 109.47215 * 179.97438 * 9 8 7 11 11 C 1.46904 * 110.99981 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47021 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99975 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99835 * 179.97438 * 12 11 10 15 15 C 1.37093 * 120.00148 * 179.97438 * 14 12 11 16 16 H 1.07994 * 119.99996 * 0.02562 * 15 14 12 17 17 C 1.38953 * 120.00188 * 179.97438 * 15 14 12 18 18 N 1.31407 * 119.99798 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46995 * 60.00196 * 19 17 15 21 21 H 1.48498 * 109.47325 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46943 * 300.00087 * 19 17 15 23 23 C 1.54510 * 110.51223 * 179.97438 * 4 3 2 24 24 C 1.54476 * 104.06080 * 118.64425 * 23 4 3 25 25 O 1.44426 * 104.80391 * 23.98511 * 24 23 4 26 26 C 1.44423 * 105.27057 * 319.48090 * 25 24 23 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 31 31 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 32 32 H 0.97007 * 119.99573 * 359.97438 * 7 5 4 33 33 H 1.09003 * 109.47130 * 299.99155 * 8 7 5 34 34 H 1.08995 * 109.47597 * 59.99571 * 8 7 5 35 35 H 1.09001 * 109.46676 * 300.00105 * 9 8 7 36 36 H 1.08995 * 109.47105 * 59.99325 * 9 8 7 37 37 H 1.00904 * 110.99610 * 303.94827 * 10 9 8 38 38 H 1.09004 * 109.46449 * 299.99372 * 11 10 9 39 39 H 1.08992 * 109.47329 * 59.99448 * 11 10 9 40 40 H 0.97006 * 120.00317 * 359.97438 * 14 12 11 41 41 H 0.97003 * 120.00215 * 179.97438 * 18 17 15 42 42 H 1.08997 * 110.51690 * 237.29402 * 23 4 3 43 43 H 1.09005 * 110.50700 * 359.87011 * 23 4 3 44 44 H 1.09002 * 110.37175 * 142.81477 * 24 23 4 45 45 H 1.09001 * 110.37701 * 265.03471 * 24 23 4 46 46 H 1.08989 * 110.37639 * 281.68150 * 26 25 24 47 47 H 1.09004 * 110.36699 * 159.34244 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0009 0.3844 -1.1885 6 8 4.7573 0.8817 -1.9957 7 7 3.5767 -0.8840 -1.3550 8 6 4.0297 -1.6621 -2.5106 9 6 3.4061 -3.0585 -2.4614 10 7 3.8598 -3.8385 -3.6205 11 6 3.2792 -5.1879 -3.6068 12 6 3.7658 -5.9563 -4.8085 13 8 4.5214 -5.4313 -5.5987 14 7 3.3613 -7.2267 -5.0049 15 6 3.8036 -7.9256 -6.0983 16 1 4.4764 -7.4582 -6.8020 17 6 3.3870 -9.2357 -6.3006 18 7 2.5695 -9.8049 -5.4435 19 14 3.9901 -10.1882 -7.7900 20 1 5.4714 -10.2851 -7.7490 21 1 3.4047 -11.5529 -7.7752 22 1 3.5742 -9.4840 -9.0295 23 6 4.1894 2.5845 0.0000 24 6 4.9986 2.6213 1.3154 25 8 5.2540 1.2352 1.6304 26 6 4.0269 0.5414 1.3163 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 2.9720 -1.2819 -0.7092 33 1 3.7249 -1.1599 -3.4288 34 1 5.1159 -1.7487 -2.4872 35 1 3.7111 -3.5604 -1.5432 36 1 2.3198 -2.9722 -2.4846 37 1 3.6453 -3.3617 -4.4835 38 1 3.5835 -5.7050 -2.6968 39 1 2.1921 -5.1161 -3.6377 40 1 2.7573 -7.6468 -4.3727 41 1 2.2783 -10.7194 -5.5849 42 1 4.8512 2.6966 -0.8588 43 1 3.4261 3.3626 -0.0031 44 1 5.9369 3.1563 1.1688 45 1 4.4148 3.0909 2.1071 46 1 3.2934 0.6900 2.1085 47 1 4.2189 -0.5217 1.1703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131898967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:48 Heat of formation + Delta-G solvation = -158.772501 kcal Electronic energy + Delta-G solvation = -28119.653397 eV Core-core repulsion = 23916.773381 eV Total energy + Delta-G solvation = -4202.880016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12517 -38.73485 -38.26899 -38.16479 -36.25131 -34.32863 -33.75110 -33.45251 -31.23014 -30.31731 -29.06861 -27.54624 -26.07004 -25.69413 -24.17453 -23.46560 -22.52876 -21.81958 -19.89173 -19.25804 -17.97509 -17.81609 -17.03781 -16.77220 -16.33623 -16.28201 -16.05077 -15.78082 -15.66131 -15.32234 -14.94157 -14.77346 -14.49637 -14.12202 -13.94245 -13.72753 -13.40425 -13.29083 -13.16041 -12.80255 -12.38893 -12.35100 -12.04297 -11.88454 -11.86388 -11.52399 -11.49612 -11.41614 -11.39970 -11.30660 -11.00029 -10.43433 -10.41090 -10.30052 -10.20607 -9.84345 -9.49392 -9.13258 -8.48245 -8.10045 -7.95651 -6.41051 -3.81806 2.37366 2.85080 3.07947 3.21251 3.26699 3.31534 3.54609 3.90184 3.91225 4.09770 4.21543 4.35749 4.45048 4.56247 4.60774 4.72998 4.77622 4.86453 4.86917 4.92966 5.00625 5.03514 5.15527 5.20310 5.22573 5.24635 5.28384 5.31767 5.36284 5.45206 5.71848 5.75225 5.88713 5.94858 5.98628 6.24878 6.29486 6.35389 6.47253 7.13681 7.40535 7.55936 7.60357 8.06728 8.08619 8.61879 9.18503 9.54650 10.06250 10.76609 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.024708 B = 0.001854 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.979528 B =15097.331485 C =15643.639462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.079 3.921 4 C -0.114 4.114 5 C 0.532 3.468 6 O -0.536 6.536 7 N -0.714 5.714 8 C 0.119 3.881 9 C 0.051 3.949 10 N -0.665 5.665 11 C 0.053 3.947 12 C 0.440 3.560 13 O -0.582 6.582 14 N -0.563 5.563 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.932 3.068 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.142 4.142 24 C 0.046 3.954 25 O -0.368 6.368 26 C 0.065 3.935 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.408 0.592 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.352 0.648 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.003 23.700 18.182 30.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.002 3.998 4 C -0.117 4.117 5 C 0.317 3.683 6 O -0.413 6.413 7 N -0.367 5.367 8 C -0.004 4.004 9 C -0.079 4.079 10 N -0.298 5.298 11 C -0.080 4.080 12 C 0.225 3.775 13 O -0.466 6.466 14 N -0.200 5.200 15 C -0.429 4.429 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.759 3.241 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.180 4.180 24 C -0.031 4.031 25 O -0.286 6.286 26 C -0.013 4.013 27 H 0.110 0.890 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.245 0.755 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.171 0.829 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.140 23.718 17.428 29.878 hybrid contribution -1.913 -0.564 -0.341 2.024 sum -7.053 23.154 17.087 29.628 Atomic orbital electron populations 1.22787 0.79805 1.03438 1.00230 1.87706 1.20692 1.27358 1.95486 1.22506 0.90200 0.85506 1.01592 1.22249 0.95401 0.97682 0.96417 1.19839 0.80419 0.81929 0.86142 1.90696 1.35579 1.70129 1.44903 1.45923 1.49570 1.13294 1.27936 1.21288 1.00552 0.90316 0.88290 1.22058 0.96978 0.92923 0.95948 1.59941 1.62488 1.02323 1.05094 1.21668 0.96728 0.90180 0.99434 1.19784 0.86068 0.83400 0.88210 1.90532 1.39026 1.69302 1.47738 1.41847 1.42980 1.10796 1.24380 1.19662 1.26514 0.94706 1.02033 0.87946 1.25266 0.96720 0.97005 0.98980 1.69603 1.33573 1.14794 1.36402 0.85905 0.79052 0.78141 0.81049 1.19858 1.20996 1.19920 1.23018 1.00486 0.93430 1.01025 1.23449 1.00667 0.84143 0.94814 1.89196 1.33556 1.19179 1.86714 1.23426 0.87101 0.97948 0.92783 0.89014 0.93753 0.93774 0.92103 0.91634 0.75509 0.91508 0.90204 0.90484 0.94917 0.82879 0.89450 0.93761 0.77452 0.91833 0.87498 0.89748 0.88507 0.92031 0.90849 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.54 7.97 -35.23 -0.28 -2.82 16 3 C 0.08 0.47 4.56 37.16 0.17 0.64 16 4 C -0.11 -0.93 0.75 -154.09 -0.12 -1.05 16 5 C 0.53 6.30 6.47 -10.99 -0.07 6.23 16 6 O -0.54 -8.41 15.28 5.55 0.08 -8.33 16 7 N -0.71 -7.61 4.93 -60.29 -0.30 -7.90 16 8 C 0.12 1.48 5.93 -4.04 -0.02 1.45 16 9 C 0.05 0.62 5.80 -3.82 -0.02 0.60 16 10 N -0.67 -10.84 6.13 -115.06 -0.70 -11.55 16 11 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 12 C 0.44 10.48 7.82 -10.99 -0.09 10.40 16 13 O -0.58 -16.05 15.78 5.55 0.09 -15.96 16 14 N -0.56 -14.35 5.29 -10.97 -0.06 -14.41 16 15 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 16 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 19 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.14 -1.04 6.32 -25.16 -0.16 -1.20 16 24 C 0.05 0.32 7.63 37.93 0.29 0.61 16 25 O -0.37 -3.73 11.65 -35.23 -0.41 -4.14 16 26 C 0.06 0.52 6.54 37.93 0.25 0.77 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.25 8.08 -51.93 -0.42 -0.16 16 32 H 0.41 3.60 6.36 -40.82 -0.26 3.34 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.35 5.93 8.43 -39.29 -0.33 5.60 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.39 9.49 7.90 -40.82 -0.32 9.16 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.11 1.05 6.50 -51.93 -0.34 0.71 16 43 H 0.08 0.40 7.73 -51.93 -0.40 0.00 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.44 7.82 -51.93 -0.41 0.03 16 47 H 0.10 0.82 7.62 -51.93 -0.40 0.42 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -34.85 388.76 -6.41 -41.25 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.46 Total: 13.17 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 1.07 Total: 12.52 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.34 Total: -57.71 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.52 Total: -31.26 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.85 -6.41 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131898967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.518 kcal (2) G-P(sol) polarization free energy of solvation -34.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds