Wall clock time and date at job start Tue Mar 31 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.45284 * 2 1 4 4 C 1.53043 * 109.45999 * 119.96935 * 2 1 3 5 5 C 1.53117 * 109.27824 * 179.19442 * 4 2 1 6 6 C 1.53119 * 109.15841 * 302.34955 * 5 4 2 7 7 H 1.09004 * 109.50083 * 177.60034 * 6 5 4 8 8 N 1.46497 * 109.50396 * 297.70782 * 6 5 4 9 9 C 1.34777 * 120.00250 * 274.80881 * 8 6 5 10 10 O 1.21275 * 120.00006 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99949 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.47206 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47234 * 179.97438 * 12 11 9 14 14 F 1.39907 * 109.46943 * 179.97438 * 13 12 11 15 15 C 1.53035 * 109.28140 * 57.65327 * 6 5 4 16 16 N 1.46844 * 109.52505 * 300.81911 * 15 6 5 17 17 C 1.46891 * 111.00211 * 185.84011 * 16 15 6 18 18 C 1.50700 * 109.47215 * 75.57359 * 17 16 15 19 19 O 1.21289 * 120.00020 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00163 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00249 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99583 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99845 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00566 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99756 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47206 * 180.02562 * 25 23 21 27 27 H 1.48498 * 109.47090 * 300.00691 * 25 23 21 28 28 H 1.48500 * 109.46950 * 60.00562 * 25 23 21 29 29 H 1.08994 * 109.47468 * 172.22104 * 1 2 3 30 30 H 1.08998 * 109.47055 * 292.22194 * 1 2 3 31 31 H 1.09003 * 109.47133 * 52.21809 * 1 2 3 32 32 H 1.09001 * 109.50309 * 59.25464 * 4 2 1 33 33 H 1.09000 * 109.53401 * 299.15647 * 4 2 1 34 34 H 1.08992 * 109.52514 * 182.44006 * 5 4 2 35 35 H 1.08998 * 109.57507 * 62.28183 * 5 4 2 36 36 H 0.97006 * 119.99774 * 94.80556 * 8 6 5 37 37 H 1.09012 * 109.46995 * 299.99852 * 11 9 8 38 38 H 1.08997 * 109.47413 * 59.99918 * 11 9 8 39 39 H 1.09008 * 109.47216 * 300.00010 * 12 11 9 40 40 H 1.09006 * 109.47337 * 59.99707 * 12 11 9 41 41 H 1.08995 * 109.47260 * 299.99866 * 13 12 11 42 42 H 1.09003 * 109.46672 * 60.00024 * 13 12 11 43 43 H 1.09000 * 109.45981 * 180.80340 * 15 6 5 44 44 H 1.09003 * 109.46273 * 60.83922 * 15 6 5 45 45 H 1.08998 * 109.47191 * 315.57196 * 17 16 15 46 46 H 1.09001 * 109.47084 * 195.57388 * 17 16 15 47 47 H 0.97007 * 120.00383 * 359.97438 * 20 18 17 48 48 H 0.97003 * 119.99985 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5709 -0.7360 1.2357 6 6 4.0547 -1.4188 -0.0466 7 1 5.1439 -1.3948 -0.0829 8 7 3.5947 -2.8096 -0.0636 9 6 4.3140 -3.7650 0.5579 10 8 5.3423 -3.4735 1.1309 11 6 3.8404 -5.1956 0.5408 12 6 4.8304 -6.0698 1.3131 13 6 4.3493 -7.5221 1.2963 14 9 5.2549 -8.3215 2.0021 15 6 3.4864 -0.6778 -1.2589 16 7 2.0193 -0.6918 -1.1993 17 6 1.4374 -0.1107 -2.4165 18 6 1.5513 -1.0985 -3.5488 19 8 2.0671 -2.1800 -3.3606 20 7 1.0811 -0.7798 -4.7710 21 6 1.1843 -1.6787 -5.8011 22 1 1.6428 -2.6420 -5.6332 23 6 0.6990 -1.3503 -7.0610 24 7 0.1416 -0.1779 -7.2654 25 14 0.8403 -2.5747 -8.4646 26 1 0.2526 -1.9870 -9.6952 27 1 2.2714 -2.8919 -8.7027 28 1 0.1097 -3.8185 -8.1118 29 1 -0.3634 -1.0181 -0.1391 30 1 -0.3633 0.3887 0.9513 31 1 -0.3633 0.6296 -0.8122 32 1 1.6659 -1.7446 1.2578 33 1 1.6894 -0.1986 2.1403 34 1 3.9379 -1.2862 2.1021 35 1 3.9466 0.2867 1.2678 36 1 2.7723 -3.0428 -0.5223 37 1 2.8581 -5.2588 1.0093 38 1 3.7745 -5.5442 -0.4898 39 1 5.8128 -6.0067 0.8451 40 1 4.8959 -5.7210 2.3438 41 1 3.3671 -7.5849 1.7646 42 1 4.2835 -7.8711 0.2658 43 1 3.8175 -1.1700 -2.1734 44 1 3.8404 0.3532 -1.2531 45 1 1.9735 0.8023 -2.6754 46 1 0.3869 0.1220 -2.2416 47 1 0.6689 0.0853 -4.9218 48 1 0.0686 0.4581 -6.5366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132232170.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:08 Heat of formation + Delta-G solvation = -136.262004 kcal Electronic energy + Delta-G solvation = -29149.457205 eV Core-core repulsion = 24959.926107 eV Total energy + Delta-G solvation = -4189.531098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.77159 -40.32545 -39.04770 -37.81914 -34.94282 -34.30337 -34.05721 -32.66150 -31.36640 -31.07014 -27.90585 -27.49175 -26.26316 -24.44014 -23.07008 -22.58605 -21.30758 -20.44179 -19.62384 -19.16567 -17.92942 -17.31769 -16.69187 -16.45778 -16.17580 -15.89157 -15.67611 -15.21481 -14.93564 -14.79431 -14.48837 -14.41800 -14.02996 -13.78872 -13.70906 -13.53037 -13.09940 -12.96807 -12.88481 -12.35070 -12.10927 -12.01093 -11.93389 -11.67132 -11.65375 -11.44325 -11.25102 -11.22262 -10.99929 -10.85889 -10.84578 -10.61734 -10.24592 -10.18786 -9.89132 -9.77223 -9.55359 -8.93324 -8.57347 -8.07434 -8.00557 -6.78157 -3.91635 2.72657 3.24824 3.27881 3.32047 3.51883 3.77785 3.83152 4.26563 4.45685 4.55760 4.56921 4.67048 4.71163 4.82946 4.85378 4.89244 5.07400 5.08731 5.12867 5.20895 5.30384 5.33884 5.39927 5.45578 5.47081 5.52739 5.56117 5.67014 5.74479 5.77923 5.84791 5.85555 5.91920 5.96599 5.99463 6.03450 6.11397 6.19271 6.29231 6.64876 7.09013 7.24322 7.74097 7.77400 8.04648 8.36718 8.57418 8.77389 9.44840 9.85518 10.65231 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.009603 B = 0.003213 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.940975 B = 8713.320624 C =10964.432947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.038 0.962 4 C -0.107 4.107 5 C -0.132 4.132 6 C 0.154 3.846 7 H 0.087 0.913 8 N -0.704 5.704 9 C 0.512 3.488 10 O -0.555 6.555 11 C -0.141 4.141 12 C -0.136 4.136 13 C 0.060 3.940 14 F -0.220 7.220 15 C 0.049 3.951 16 N -0.509 5.509 17 C 0.038 3.962 18 C 0.448 3.552 19 O -0.571 6.571 20 N -0.578 5.578 21 C -0.381 4.381 22 H 0.098 0.902 23 C -0.010 4.010 24 N -0.902 5.902 25 Si 1.090 2.910 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.417 0.583 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.040 0.960 45 H 0.048 0.952 46 H 0.094 0.906 47 H 0.374 0.626 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 -2.218 16.737 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 H 0.056 0.944 4 C -0.144 4.144 5 C -0.171 4.171 6 C 0.049 3.951 7 H 0.105 0.895 8 N -0.356 5.356 9 C 0.299 3.701 10 O -0.434 6.434 11 C -0.181 4.181 12 C -0.174 4.174 13 C 0.005 3.995 14 F -0.201 7.201 15 C -0.079 4.079 16 N -0.234 5.234 17 C -0.093 4.093 18 C 0.233 3.767 19 O -0.455 6.455 20 N -0.216 5.216 21 C -0.510 4.510 22 H 0.116 0.884 23 C -0.212 4.212 24 N -0.541 5.541 25 Si 0.916 3.084 26 H -0.204 1.204 27 H -0.211 1.211 28 H -0.210 1.210 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.254 0.746 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.112 0.888 47 H 0.207 0.793 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.689 -3.486 15.666 16.273 hybrid contribution -0.095 1.661 1.231 2.069 sum 2.594 -1.825 16.897 17.192 Atomic orbital electron populations 1.21946 0.94371 1.02980 1.01399 1.21674 0.95423 0.95285 0.90555 0.94409 1.21571 0.95162 1.01488 0.96226 1.21984 0.96173 1.00596 0.98342 1.20888 0.98936 0.81169 0.94113 0.89494 1.45979 1.27858 1.06978 1.54805 1.20529 0.83852 0.87461 0.78277 1.90672 1.24695 1.83302 1.44760 1.21539 1.00669 0.92504 1.03379 1.21880 1.00141 0.92809 1.02563 1.22030 0.91265 0.89497 0.96676 1.92764 1.70486 1.75596 1.81291 1.22422 0.87570 0.98542 0.99384 1.61434 1.06628 1.54683 1.00677 1.21985 1.01036 0.95788 0.90470 1.19673 0.84720 0.89014 0.83253 1.90482 1.47876 1.24272 1.82828 1.41952 1.53883 1.17002 1.08781 1.20498 1.40822 0.99732 0.89953 0.88365 1.26477 0.94782 1.00394 0.99538 1.70907 1.41790 1.06534 1.34873 0.83148 0.76784 0.73849 0.74620 1.20439 1.21057 1.21015 0.91376 0.92274 0.92424 0.91029 0.91731 0.91327 0.91493 0.74613 0.88668 0.88235 0.90027 0.90183 0.90735 0.90563 0.88487 0.94179 0.93435 0.88763 0.79294 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.59 37.16 0.32 -1.24 16 2 C 0.08 0.90 2.44 -67.72 -0.17 0.73 16 3 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.11 -1.11 5.20 -26.65 -0.14 -1.24 16 5 C -0.13 -1.47 5.67 -26.61 -0.15 -1.62 16 6 C 0.15 2.01 2.81 -67.85 -0.19 1.82 16 7 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 8 N -0.70 -9.25 4.41 -53.73 -0.24 -9.48 16 9 C 0.51 6.77 7.80 -10.98 -0.09 6.68 16 10 O -0.56 -9.07 15.64 5.56 0.09 -8.98 16 11 C -0.14 -1.36 5.70 -27.88 -0.16 -1.52 16 12 C -0.14 -1.33 4.96 -26.73 -0.13 -1.46 16 13 C 0.06 0.50 7.55 37.16 0.28 0.78 16 14 F -0.22 -2.49 17.36 2.25 0.04 -2.45 16 15 C 0.05 0.70 4.70 -3.84 -0.02 0.68 16 16 N -0.51 -7.20 3.53 -228.13 -0.81 -8.01 16 17 C 0.04 0.61 5.31 -4.98 -0.03 0.59 16 18 C 0.45 9.72 7.49 -10.99 -0.08 9.64 16 19 O -0.57 -14.00 14.74 5.55 0.08 -13.92 16 20 N -0.58 -13.79 5.28 -10.96 -0.06 -13.85 16 21 C -0.38 -10.29 9.68 -14.93 -0.14 -10.43 16 22 H 0.10 2.81 7.16 -52.49 -0.38 2.43 16 23 C -0.01 -0.25 5.50 -17.47 -0.10 -0.35 16 24 N -0.90 -24.72 13.68 55.50 0.76 -23.96 16 25 Si 1.09 23.70 29.92 -169.99 -5.09 18.61 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 28 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.06 0.61 6.38 -51.93 -0.33 0.27 16 32 H 0.07 0.80 7.73 -51.93 -0.40 0.39 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.42 5.74 8.17 -40.82 -0.33 5.40 16 37 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.08 0.92 8.10 -51.92 -0.42 0.50 16 40 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 1.70 6.69 -51.93 -0.35 1.35 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.71 8.00 -51.93 -0.42 0.30 16 46 H 0.09 1.37 5.42 -51.93 -0.28 1.08 16 47 H 0.37 8.33 6.73 -40.82 -0.27 8.06 16 48 H 0.26 6.85 6.78 -40.82 -0.28 6.57 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -32.11 385.68 -7.91 -40.02 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -7.72 Total: 13.15 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.79 Total: 3.04 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.34 Total: -55.30 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.17 Total: -22.89 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.09 Total: 18.61 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.11 -7.91 -40.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132232170.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.238 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds