Wall clock time and date at job start Tue Mar 31 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.45835 * 2 1 4 4 C 1.53036 * 109.45437 * 240.02400 * 2 1 3 5 5 C 1.53124 * 109.27753 * 180.80797 * 4 2 1 6 6 C 1.53124 * 109.16086 * 57.65319 * 5 4 2 7 7 H 1.08999 * 109.49619 * 62.28601 * 6 5 4 8 8 N 1.46495 * 109.50361 * 182.36283 * 6 5 4 9 9 C 1.34775 * 120.00185 * 275.00500 * 8 6 5 10 10 O 1.21276 * 120.00106 * 359.97438 * 9 8 6 11 11 C 1.50699 * 120.00098 * 180.02562 * 9 8 6 12 12 C 1.52995 * 109.47479 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47589 * 180.02562 * 12 11 9 14 14 F 1.39894 * 109.47344 * 179.97438 * 13 12 11 15 15 C 1.53035 * 109.27675 * 302.34745 * 6 5 4 16 16 N 1.46846 * 109.46340 * 119.97311 * 2 1 3 17 17 C 1.46901 * 111.00341 * 305.84602 * 16 2 1 18 18 C 1.50702 * 109.47227 * 163.93039 * 17 16 2 19 19 O 1.21296 * 119.99778 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99921 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00033 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00244 * 359.97438 * 21 20 18 23 23 C 1.38959 * 119.99980 * 179.72200 * 21 20 18 24 24 N 1.31409 * 120.00186 * 0.27515 * 23 21 20 25 25 Si 1.86807 * 119.99692 * 180.27511 * 23 21 20 26 26 H 1.48497 * 109.47232 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.46897 * 120.00147 * 25 23 21 28 28 H 1.48502 * 109.46834 * 239.99707 * 25 23 21 29 29 H 1.09007 * 109.47553 * 307.47136 * 1 2 3 30 30 H 1.08996 * 109.47254 * 67.47329 * 1 2 3 31 31 H 1.09001 * 109.46960 * 187.47756 * 1 2 3 32 32 H 1.08997 * 109.50202 * 300.75083 * 4 2 1 33 33 H 1.09001 * 109.50108 * 60.83386 * 4 2 1 34 34 H 1.08994 * 109.52330 * 177.55848 * 5 4 2 35 35 H 1.09002 * 109.52046 * 297.75294 * 5 4 2 36 36 H 0.97005 * 119.99570 * 94.99927 * 8 6 5 37 37 H 1.09005 * 109.47000 * 299.99894 * 11 9 8 38 38 H 1.09000 * 109.47459 * 59.99499 * 11 9 8 39 39 H 1.09005 * 109.46854 * 299.99905 * 12 11 9 40 40 H 1.09000 * 109.47248 * 59.99291 * 12 11 9 41 41 H 1.08999 * 109.46418 * 299.99575 * 13 12 11 42 42 H 1.08996 * 109.47131 * 59.99546 * 13 12 11 43 43 H 1.09003 * 109.46354 * 299.15865 * 15 6 5 44 44 H 1.09005 * 109.45848 * 179.19635 * 15 6 5 45 45 H 1.09001 * 109.46971 * 43.93128 * 17 16 2 46 46 H 1.09000 * 109.47206 * 283.93401 * 17 16 2 47 47 H 0.97006 * 120.00460 * 359.97438 * 20 18 17 48 48 H 0.96997 * 119.99822 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7210 -1.2500 5 6 3.5707 -0.7363 -1.2357 6 6 4.0546 -1.4190 0.0466 7 1 3.7121 -2.4538 0.0593 8 7 5.5184 -1.3877 0.0950 9 6 6.2340 -2.3436 -0.5300 10 8 5.6661 -3.2301 -1.1320 11 6 7.7398 -2.3117 -0.4797 12 6 8.3016 -3.4996 -1.2633 13 6 9.8304 -3.4675 -1.2118 14 9 10.3441 -4.5540 -1.9278 15 6 3.4864 -0.6778 1.2589 16 7 2.0192 -0.6917 1.1994 17 6 1.4375 -0.1104 2.4166 18 6 1.6328 -1.0605 3.5700 19 8 2.2013 -2.1177 3.3952 20 7 1.1760 -0.7356 4.7955 21 6 1.3541 -1.5997 5.8449 22 1 1.8603 -2.5410 5.6894 23 6 0.8882 -1.2620 7.1097 24 7 0.2720 -0.1169 7.2989 25 14 1.1378 -2.4361 8.5411 26 1 1.8535 -3.6482 8.0682 27 1 1.9404 -1.7668 9.5961 28 1 -0.1827 -2.8268 9.0969 29 1 -0.3634 0.6252 0.8156 30 1 -0.3633 0.3937 -0.9492 31 1 -0.3633 -1.0189 0.1337 32 1 1.6655 -1.7447 -1.2576 33 1 1.6887 -0.1985 -2.1399 34 1 3.9376 -1.2866 -2.1021 35 1 3.9455 0.2868 -1.2673 36 1 5.9727 -0.6788 0.5768 37 1 8.0985 -1.3825 -0.9225 38 1 8.0701 -2.3711 0.5573 39 1 7.9430 -4.4290 -0.8209 40 1 7.9713 -3.4397 -2.3003 41 1 10.1893 -2.5381 -1.6540 42 1 10.1603 -3.5276 -0.1747 43 1 3.8404 0.3531 1.2530 44 1 3.8175 -1.1701 2.1734 45 1 0.3720 0.0613 2.2638 46 1 1.9299 0.8364 2.6383 47 1 0.7217 0.1101 4.9354 48 1 -0.0536 0.1185 8.1818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132232172.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:16 Heat of formation + Delta-G solvation = -136.247786 kcal Electronic energy + Delta-G solvation = -28518.623618 eV Core-core repulsion = 24329.093136 eV Total energy + Delta-G solvation = -4189.530482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.87688 -40.24967 -39.12954 -37.65443 -35.15400 -34.23064 -33.95965 -32.65279 -31.38507 -31.16088 -27.99174 -27.57865 -26.00334 -24.59531 -23.02402 -22.61284 -21.25081 -20.45682 -19.73011 -19.10833 -17.85526 -17.40234 -16.81924 -16.47895 -16.12166 -15.83726 -15.47382 -15.23568 -14.92189 -14.75336 -14.59470 -14.34614 -14.04824 -13.86446 -13.67985 -13.54732 -13.18041 -13.04926 -12.49296 -12.32521 -12.21622 -11.99307 -11.85777 -11.80098 -11.51558 -11.44821 -11.35404 -11.10600 -10.97414 -10.95477 -10.87415 -10.65108 -10.35037 -10.33151 -10.21737 -9.86636 -9.49708 -9.07859 -8.47175 -7.97314 -7.87704 -6.42050 -3.82573 2.55606 2.96511 3.15692 3.26395 3.33679 3.90395 3.94970 4.21267 4.31219 4.39639 4.42450 4.68013 4.74284 4.84212 4.87300 4.94081 4.96719 4.99349 5.16541 5.19042 5.24573 5.34488 5.38287 5.45982 5.51744 5.57615 5.63633 5.63780 5.75358 5.85146 5.90515 5.92095 6.01448 6.05107 6.14582 6.23396 6.24205 6.28852 6.41265 6.47046 7.23490 7.37184 7.42877 7.55210 8.06787 8.15658 8.62135 9.18608 9.54948 10.07052 10.75844 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.002701 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.634109 B =10363.835519 C =12648.956898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.037 0.963 4 C -0.107 4.107 5 C -0.128 4.128 6 C 0.150 3.850 7 H 0.100 0.900 8 N -0.724 5.724 9 C 0.514 3.486 10 O -0.537 6.537 11 C -0.140 4.140 12 C -0.139 4.139 13 C 0.062 3.938 14 F -0.219 7.219 15 C 0.055 3.945 16 N -0.505 5.505 17 C 0.041 3.959 18 C 0.444 3.556 19 O -0.575 6.575 20 N -0.567 5.567 21 C -0.296 4.296 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.398 0.602 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.026 0.974 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.047 0.953 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.331 5.027 -16.412 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 H 0.055 0.945 4 C -0.145 4.145 5 C -0.167 4.167 6 C 0.045 3.955 7 H 0.118 0.882 8 N -0.375 5.375 9 C 0.300 3.700 10 O -0.414 6.414 11 C -0.180 4.180 12 C -0.177 4.177 13 C 0.007 3.993 14 F -0.200 7.200 15 C -0.074 4.074 16 N -0.231 5.231 17 C -0.090 4.090 18 C 0.229 3.771 19 O -0.459 6.459 20 N -0.204 5.204 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.232 0.768 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.065 0.935 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.077 3.221 -16.832 20.406 hybrid contribution 0.227 1.338 1.273 1.861 sum 11.304 4.559 -15.559 19.765 Atomic orbital electron populations 1.21947 0.94261 1.03155 1.01415 1.21681 0.95619 0.95090 0.90567 0.94515 1.21565 0.94580 1.01993 0.96398 1.21965 0.96207 1.00280 0.98224 1.20948 0.78132 1.02241 0.94161 0.88210 1.46005 1.07411 1.29230 1.54839 1.20510 0.89604 0.81291 0.78574 1.90726 1.72577 1.35522 1.42534 1.21552 0.92613 1.00612 1.03204 1.21910 0.93705 0.99449 1.02661 1.22004 0.93985 0.86948 0.96389 1.92772 1.88378 1.58072 1.80756 1.22284 0.87974 0.97746 0.99356 1.61354 1.06128 1.54786 1.00783 1.21966 1.01114 0.95736 0.90143 1.19783 0.85005 0.88675 0.83640 1.90520 1.46232 1.25447 1.83666 1.41879 1.51530 1.20084 1.06886 1.19735 1.35135 1.01287 0.86435 0.87917 1.25250 0.96850 0.97031 0.98877 1.69617 1.38932 1.21869 1.24024 0.85821 0.78029 0.80107 0.80525 1.19227 1.20820 1.20759 0.92310 0.92274 0.91236 0.90591 0.91375 0.91482 0.92389 0.76810 0.88638 0.88356 0.89778 0.89979 0.90805 0.90653 0.95570 0.88204 0.88559 0.93491 0.77574 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.57 37.15 0.32 -1.41 16 2 C 0.08 0.99 2.44 -67.73 -0.17 0.82 16 3 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.11 -1.23 5.37 -26.65 -0.14 -1.38 16 5 C -0.13 -1.49 5.58 -26.60 -0.15 -1.64 16 6 C 0.15 2.03 2.61 -67.85 -0.18 1.86 16 7 H 0.10 1.73 7.58 -51.93 -0.39 1.33 16 8 N -0.72 -7.91 5.08 -53.73 -0.27 -8.18 16 9 C 0.51 6.02 7.79 -10.99 -0.09 5.93 16 10 O -0.54 -8.64 15.65 5.56 0.09 -8.55 16 11 C -0.14 -1.00 5.70 -27.89 -0.16 -1.16 16 12 C -0.14 -1.16 4.96 -26.73 -0.13 -1.29 16 13 C 0.06 0.41 7.55 37.16 0.28 0.69 16 14 F -0.22 -2.23 17.36 2.25 0.04 -2.19 16 15 C 0.05 0.82 4.58 -3.83 -0.02 0.80 16 16 N -0.51 -8.08 4.12 -228.12 -0.94 -9.02 16 17 C 0.04 0.72 5.26 -4.97 -0.03 0.69 16 18 C 0.44 10.23 7.47 -10.99 -0.08 10.15 16 19 O -0.58 -15.26 14.42 5.54 0.08 -15.18 16 20 N -0.57 -14.11 5.29 -10.96 -0.06 -14.16 16 21 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 25 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.06 0.67 6.44 -51.92 -0.33 0.33 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.40 3.20 8.60 -40.82 -0.35 2.84 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.86 8.10 -51.93 -0.42 0.43 16 40 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 1.84 6.35 -51.93 -0.33 1.51 16 45 H 0.10 1.52 5.55 -51.93 -0.29 1.23 16 46 H 0.05 0.74 8.05 -51.93 -0.42 0.32 16 47 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 388.75 15.07 5.86 5.86 Total: -1.00 -33.72 388.75 -8.15 -41.86 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -7.86 Total: 11.03 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.78 Total: 6.22 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.55 Total: -54.97 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.17 Total: -23.74 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.72 -8.15 -41.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132232172.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.384 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds