Wall clock time and date at job start Tue Mar 31 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86797 * 119.99662 * 2 1 4 4 H 1.48498 * 109.47238 * 275.24751 * 3 2 1 5 5 H 1.48497 * 109.47270 * 35.25111 * 3 2 1 6 6 H 1.48502 * 109.46895 * 155.25276 * 3 2 1 7 7 C 1.39921 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99610 * 340.74791 * 7 2 1 9 9 C 1.41291 * 120.00408 * 160.46749 * 7 2 1 10 10 C 1.40633 * 120.22660 * 334.91141 * 9 7 2 11 11 C 1.38152 * 119.70819 * 179.81068 * 10 9 7 12 12 N 1.40001 * 119.91057 * 180.20705 * 11 10 9 13 13 C 1.34780 * 120.00042 * 146.13332 * 12 11 10 14 14 O 1.21290 * 119.99838 * 355.44433 * 13 12 11 15 15 C 1.50701 * 119.99953 * 175.45042 * 13 12 11 16 16 C 1.53000 * 109.46928 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47287 * 179.97438 * 16 15 13 18 18 S 1.81394 * 109.47575 * 179.97438 * 17 16 15 19 19 N 1.65591 * 104.45478 * 180.02562 * 18 17 16 20 20 O 1.42104 * 110.54526 * 291.63272 * 18 17 16 21 21 O 1.42107 * 110.54274 * 68.37781 * 18 17 16 22 22 C 1.39367 * 120.17386 * 0.43918 * 11 10 9 23 23 C 1.38357 * 120.47584 * 359.78967 * 22 11 10 24 24 C 1.38010 * 120.28647 * 359.97438 * 23 22 11 25 25 F 1.35099 * 120.09821 * 179.97438 * 24 23 22 26 26 H 0.96999 * 120.00156 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.15298 * 359.97438 * 10 9 7 28 28 H 0.97000 * 120.00103 * 326.13053 * 12 11 10 29 29 H 1.08998 * 109.46924 * 299.99632 * 15 13 12 30 30 H 1.08999 * 109.47294 * 59.99843 * 15 13 12 31 31 H 1.08998 * 109.47249 * 299.99718 * 16 15 13 32 32 H 1.08999 * 109.47029 * 59.99966 * 16 15 13 33 33 H 1.08999 * 109.47572 * 300.00398 * 17 16 15 34 34 H 1.08999 * 109.46786 * 60.00219 * 17 16 15 35 35 H 0.96995 * 120.00742 * 150.00081 * 19 18 17 36 36 H 0.97007 * 119.99831 * 330.00182 * 19 18 17 37 37 H 1.07999 * 119.75863 * 179.76615 * 22 11 10 38 38 H 1.08002 * 119.86240 * 179.97438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3790 2.1105 -1.3942 5 1 1.4997 2.6181 0.8080 6 1 3.5911 1.4107 0.5861 7 6 2.0082 -1.2117 0.0005 8 1 1.5135 -2.1208 0.3094 9 6 3.3602 -1.2471 -0.4085 10 6 3.8610 -0.2666 -1.2835 11 6 5.1856 -0.3092 -1.6735 12 7 5.6897 0.6672 -2.5410 13 6 6.9658 1.0834 -2.4186 14 8 7.6524 0.6738 -1.5065 15 6 7.5394 2.0578 -3.4148 16 6 8.9933 2.3639 -3.0497 17 6 9.5759 3.3527 -4.0615 18 16 11.2995 3.7163 -3.6283 19 7 11.8008 4.7852 -4.7893 20 8 11.3636 4.4584 -2.4181 21 8 12.1164 2.5711 -3.8294 22 6 6.0201 -1.3244 -1.2095 23 6 5.5340 -2.2955 -0.3522 24 6 4.2152 -2.2687 0.0536 25 9 3.7444 -3.2192 0.8904 26 1 -0.4850 0.8400 -0.0004 27 1 3.2137 0.5178 -1.6470 28 1 5.1207 1.0441 -3.2302 29 1 7.4991 1.6225 -4.4133 30 1 6.9587 2.9801 -3.3968 31 1 9.0333 2.7994 -2.0513 32 1 9.5742 1.4418 -3.0675 33 1 9.5360 2.9170 -5.0598 34 1 8.9951 4.2749 -4.0441 35 1 12.4769 5.4481 -4.5789 36 1 11.4184 4.7484 -5.6801 37 1 7.0536 -1.3534 -1.5216 38 1 6.1894 -3.0779 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144593554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:21 Heat of formation + Delta-G solvation = -144.831549 kcal Electronic energy + Delta-G solvation = -25086.035081 eV Core-core repulsion = 20969.500399 eV Total energy + Delta-G solvation = -4116.534682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -47.37786 -40.06693 -37.56717 -37.35188 -36.26189 -35.06347 -34.40459 -33.62828 -33.50458 -30.66460 -29.56675 -27.67634 -25.31538 -23.26597 -22.10647 -21.07566 -19.89522 -19.78366 -18.17826 -17.73894 -17.62205 -17.26845 -16.62547 -16.52001 -16.06724 -15.95111 -15.47686 -15.07710 -14.74792 -14.23875 -14.14672 -13.99009 -13.48760 -13.16932 -12.85324 -12.70811 -12.52017 -12.41928 -12.35346 -12.29041 -12.21721 -11.98342 -11.83376 -11.49453 -11.29655 -11.18369 -10.95685 -10.80432 -10.69768 -10.31641 -9.88947 -9.68822 -9.28923 -9.23686 -7.90396 -7.17703 -7.13739 -4.63780 -0.15818 2.10583 2.43520 2.47650 2.83110 2.95378 3.10817 3.19772 3.22720 3.41015 3.82696 3.85694 4.09974 4.30233 4.45024 4.49518 4.87928 4.90996 5.03069 5.17021 5.25956 5.50660 5.54256 5.67920 5.71258 5.83300 6.22536 6.34344 6.40955 6.54914 6.57532 6.90373 7.17232 7.30927 7.42356 7.45220 7.75820 7.93958 8.17374 8.33691 8.49329 8.57944 9.87317 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.020591 B = 0.002563 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.523475 B =10920.971760 C =11830.909683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.084 3.916 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.241 1.241 7 C -0.431 4.431 8 H 0.098 0.902 9 C 0.080 3.920 10 C -0.252 4.252 11 C 0.170 3.830 12 N -0.670 5.670 13 C 0.504 3.496 14 O -0.518 6.518 15 C -0.132 4.132 16 C -0.099 4.099 17 C -0.624 4.624 18 S 2.616 3.384 19 N -1.253 6.253 20 O -0.960 6.960 21 O -0.958 6.958 22 C -0.215 4.215 23 C -0.098 4.098 24 C -0.019 4.019 25 F -0.157 7.157 26 H 0.289 0.711 27 H 0.110 0.890 28 H 0.404 0.596 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.420 0.580 36 H 0.412 0.588 37 H 0.116 0.884 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.880 12.098 -13.975 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.137 4.137 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.164 1.164 7 C -0.458 4.458 8 H 0.116 0.884 9 C 0.076 3.924 10 C -0.274 4.274 11 C 0.078 3.922 12 N -0.315 5.315 13 C 0.291 3.709 14 O -0.393 6.393 15 C -0.173 4.173 16 C -0.139 4.139 17 C -0.754 4.754 18 S 2.707 3.293 19 N -0.925 5.925 20 O -0.949 6.949 21 O -0.947 6.947 22 C -0.236 4.236 23 C -0.117 4.117 24 C -0.039 4.039 25 F -0.136 7.136 26 H 0.099 0.901 27 H 0.128 0.872 28 H 0.239 0.761 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.249 0.751 36 H 0.238 0.762 37 H 0.134 0.866 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.587 11.414 -12.408 22.961 hybrid contribution -0.807 1.242 -1.102 1.846 sum 14.780 12.656 -13.510 23.688 Atomic orbital electron populations 1.69698 1.08142 1.30658 1.33124 1.26210 0.94784 1.01882 0.90805 0.86267 0.81580 0.79401 0.78540 1.19818 1.21659 1.16436 1.19444 0.93122 0.96720 1.36512 0.88444 1.17414 0.93074 0.90666 0.91272 1.20482 0.94591 1.05081 1.07227 1.17413 0.92888 0.88572 0.93337 1.43549 1.12745 1.40407 1.34754 1.20627 0.81893 0.82236 0.86191 1.90750 1.59045 1.56590 1.32931 1.21605 0.96243 0.99897 0.99554 1.21065 0.96222 0.98721 0.97844 1.30502 1.24620 1.10017 1.10216 1.04732 0.76907 0.74049 0.73595 1.53271 1.57083 1.54526 1.27632 1.93625 1.86380 1.70902 1.44034 1.93639 1.64069 1.51831 1.85209 1.20109 0.99428 0.96947 1.07125 1.20482 0.93544 0.99007 0.98703 1.17719 0.92478 0.93761 0.99975 1.91308 1.89341 1.62871 1.70056 0.90077 0.87238 0.76138 0.88197 0.88351 0.89052 0.89054 0.84668 0.84423 0.75063 0.76209 0.86579 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.35 13.93 55.55 0.77 -19.58 16 2 C 0.08 2.13 5.41 -17.34 -0.09 2.04 16 3 Si 0.92 20.02 24.43 -169.99 -4.15 15.87 16 4 H -0.27 -5.47 6.64 56.52 0.38 -5.09 16 5 H -0.29 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.24 -5.61 6.79 56.52 0.38 -5.22 16 7 C -0.43 -11.55 9.30 -37.79 -0.35 -11.91 16 8 H 0.10 2.79 7.89 -52.48 -0.41 2.38 16 9 C 0.08 2.03 5.22 -106.78 -0.56 1.47 16 10 C -0.25 -5.77 7.07 -38.71 -0.27 -6.04 16 11 C 0.17 3.54 6.26 -83.74 -0.52 3.02 16 12 N -0.67 -10.63 5.34 -9.89 -0.05 -10.69 16 13 C 0.50 7.48 7.57 -10.98 -0.08 7.40 16 14 O -0.52 -9.84 13.68 5.55 0.08 -9.76 16 15 C -0.13 -1.15 5.70 -27.88 -0.16 -1.31 16 16 C -0.10 -0.88 4.51 -26.73 -0.12 -1.00 16 17 C -0.62 -2.91 6.17 37.16 0.23 -2.68 16 18 S 2.62 18.90 5.97 -107.50 -0.64 18.26 16 19 N -1.25 -4.27 9.36 60.35 0.57 -3.71 16 20 O -0.96 -11.05 18.10 -57.54 -1.04 -12.09 16 21 O -0.96 -11.07 18.10 -57.54 -1.04 -12.11 16 22 C -0.22 -4.61 8.66 -39.12 -0.34 -4.95 16 23 C -0.10 -2.15 10.00 -39.62 -0.40 -2.55 16 24 C -0.02 -0.46 7.31 -38.61 -0.28 -0.75 16 25 F -0.16 -3.88 16.71 2.25 0.04 -3.84 16 26 H 0.29 6.62 8.30 -40.82 -0.34 6.28 16 27 H 0.11 2.40 4.18 -52.49 -0.22 2.18 16 28 H 0.40 4.91 8.82 -40.82 -0.36 4.55 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 33 H 0.13 0.25 8.14 -51.92 -0.42 -0.18 16 34 H 0.14 0.32 8.14 -51.92 -0.42 -0.10 16 35 H 0.42 1.19 8.96 -34.47 -0.31 0.88 16 36 H 0.41 0.17 8.96 -34.46 -0.31 -0.14 16 37 H 0.12 2.40 6.43 -52.49 -0.34 2.06 16 38 H 0.11 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -37.40 339.72 -7.39 -44.79 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.08 Total: 4.98 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -2.95 Total: -17.25 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 1.29 Total: -33.97 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -2.01 Total: -33.96 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.15 Total: 15.87 kcal Atomic # 16 Polarization: 18.90 SS G_CDS: -0.64 Total: 18.26 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.40 -7.39 -44.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144593554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.037 kcal (2) G-P(sol) polarization free energy of solvation -37.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds