Wall clock time and date at job start Tue Mar 31 2020 04:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99798 * 2 1 4 4 C 1.50697 * 109.47215 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00007 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99968 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99588 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.46632 * 180.02562 * 7 6 4 9 9 H 1.09004 * 108.70975 * 306.75593 * 8 7 6 10 10 C 1.54171 * 108.64883 * 188.56788 * 8 7 6 11 11 N 1.48520 * 111.93785 * 197.89112 * 10 8 7 12 12 C 1.46903 * 111.00342 * 192.47306 * 11 10 8 13 13 C 1.50698 * 109.46956 * 66.20101 * 12 11 10 14 14 O 1.21286 * 120.00071 * 5.63888 * 13 12 11 15 15 N 1.34778 * 120.00180 * 185.63611 * 13 12 11 16 16 C 1.37097 * 120.00416 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99665 * 359.97438 * 16 15 13 18 18 C 1.38944 * 120.00009 * 180.02562 * 16 15 13 19 19 N 1.31408 * 120.00194 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99842 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47193 * 59.99640 * 20 18 16 22 22 H 1.48507 * 109.47125 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47509 * 299.99721 * 20 18 16 24 24 C 1.44067 * 114.18958 * 318.85509 * 11 10 8 25 25 C 1.54018 * 108.26962 * 93.30738 * 24 11 10 26 26 C 1.46283 * 112.02966 * 280.49968 * 25 24 11 27 27 O 1.39991 * 108.74848 * 64.99710 * 8 7 6 28 28 H 1.09000 * 109.47690 * 59.99845 * 1 2 3 29 29 H 1.08998 * 109.46854 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47505 * 299.99629 * 1 2 3 31 31 H 1.09008 * 109.47095 * 60.00076 * 3 2 1 32 32 H 1.09002 * 109.47306 * 300.00265 * 3 2 1 33 33 H 0.97000 * 120.00195 * 0.02562 * 6 4 3 34 34 H 1.08998 * 109.47182 * 60.00547 * 7 6 4 35 35 H 1.08996 * 109.46882 * 299.99477 * 7 6 4 36 36 H 1.09000 * 108.98559 * 318.52437 * 10 8 7 37 37 H 1.08996 * 108.98526 * 77.25993 * 10 8 7 38 38 H 1.08995 * 109.47633 * 186.20283 * 12 11 10 39 39 H 1.09000 * 109.46962 * 306.20419 * 12 11 10 40 40 H 0.97003 * 119.99931 * 0.02562 * 15 13 12 41 41 H 0.97008 * 120.00192 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.70237 * 333.61738 * 24 11 10 43 43 H 1.08997 * 109.70911 * 212.99967 * 24 11 10 44 44 H 1.08995 * 108.97175 * 159.84315 * 25 24 11 45 45 H 1.09005 * 108.96532 * 41.14964 * 25 24 11 46 46 H 1.09002 * 109.11061 * 180.13526 * 26 25 24 47 47 H 1.09003 * 109.10353 * 299.17887 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 8 4.0341 0.0917 0.0006 6 7 4.2763 2.2970 0.0002 7 6 5.7368 2.1813 0.0003 8 6 6.3590 3.5791 0.0004 9 1 5.9368 4.1498 -0.8268 10 6 7.8791 3.4420 -0.2172 11 7 8.6102 4.6705 0.1856 12 6 9.9977 4.6392 -0.2960 13 6 10.0082 4.6972 -1.8018 14 8 8.9715 4.8614 -2.4096 15 7 11.1695 4.5666 -2.4733 16 6 11.1792 4.6199 -3.8432 17 1 10.2560 4.7661 -4.3843 18 6 12.3763 4.4847 -4.5353 19 7 13.4995 4.3063 -3.8768 20 14 12.3893 4.5566 -6.4018 21 1 11.8619 5.8704 -6.8503 22 1 13.7802 4.3879 -6.8940 23 1 11.5362 3.4693 -6.9451 24 6 7.9588 5.8973 -0.1967 25 6 7.0822 6.3654 0.9800 26 6 5.8145 5.6383 1.0431 27 8 6.0301 4.2179 1.2018 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8465 0.8901 32 1 1.6885 1.8465 -0.8900 33 1 3.8592 3.1727 -0.0001 34 1 6.0584 1.6402 -0.8895 35 1 6.0584 1.6408 0.8905 36 1 8.2472 2.6014 0.3710 37 1 8.0700 3.2455 -1.2721 38 1 10.5408 5.4952 0.1043 39 1 10.4766 3.7178 0.0354 40 1 11.9986 4.4349 -1.9872 41 1 14.3353 4.2115 -4.3600 42 1 7.3349 5.7243 -1.0736 43 1 8.7077 6.6565 -0.4218 44 1 6.8751 7.4295 0.8661 45 1 7.6267 6.2096 1.9113 46 1 5.2330 6.0075 1.8879 47 1 5.2564 5.8138 0.1233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148941171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:34 Heat of formation + Delta-G solvation = -146.549811 kcal Electronic energy + Delta-G solvation = -28869.929087 eV Core-core repulsion = 24667.579087 eV Total energy + Delta-G solvation = -4202.350000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.25573 -39.60867 -38.33344 -37.66574 -35.69987 -34.99461 -33.85096 -32.88295 -31.37866 -30.45093 -29.08866 -27.14796 -26.55423 -25.79064 -24.64313 -22.99573 -21.53973 -20.84550 -20.28673 -19.16687 -17.93603 -17.65674 -17.17589 -16.87832 -16.53936 -16.18487 -16.07982 -15.72639 -15.26777 -14.82306 -14.73264 -14.54554 -14.26387 -14.01150 -13.70772 -13.47057 -13.29840 -13.22520 -13.13210 -12.77145 -12.63439 -12.25244 -12.07911 -11.82367 -11.60243 -11.41048 -11.07566 -10.92862 -10.81914 -10.65562 -10.50523 -10.49237 -10.29235 -10.16604 -9.99792 -9.59009 -9.49048 -9.21802 -9.06312 -8.05338 -7.55837 -6.49157 -3.90871 2.46196 2.59291 3.13452 3.20740 3.24494 3.68003 3.76392 3.79347 4.10285 4.16384 4.48910 4.73212 4.79288 4.88524 4.94245 4.96034 4.98907 4.99619 5.05446 5.09857 5.18806 5.26012 5.29937 5.32662 5.53109 5.65215 5.73189 5.82776 5.86762 5.99203 6.00092 6.12105 6.13388 6.18348 6.26194 6.28364 6.54599 6.61425 7.20617 7.30412 7.33632 7.46757 7.54407 7.96243 8.06263 8.50811 9.08397 9.44958 9.94627 10.67237 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.002550 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.431590 B =10979.470119 C =12396.825949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.512 3.488 5 O -0.520 6.520 6 N -0.722 5.722 7 C 0.123 3.877 8 C 0.087 3.913 9 H 0.062 0.938 10 C 0.037 3.963 11 N -0.518 5.518 12 C 0.045 3.955 13 C 0.404 3.596 14 O -0.600 6.600 15 N -0.555 5.555 16 C -0.304 4.304 17 H 0.101 0.899 18 C 0.024 3.976 19 N -0.897 5.897 20 Si 0.930 3.070 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.069 3.931 25 C -0.155 4.155 26 C 0.066 3.934 27 O -0.361 6.361 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.400 0.600 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.393 0.607 41 H 0.273 0.727 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.594 1.065 10.708 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.296 3.704 5 O -0.394 6.394 6 N -0.375 5.375 7 C -0.001 4.001 8 C 0.027 3.973 9 H 0.080 0.920 10 C -0.091 4.091 11 N -0.240 5.240 12 C -0.087 4.087 13 C 0.189 3.811 14 O -0.487 6.487 15 N -0.190 5.190 16 C -0.433 4.433 17 H 0.119 0.881 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.757 3.243 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.199 1.199 24 C -0.060 4.060 25 C -0.193 4.193 26 C -0.010 4.010 27 O -0.279 6.279 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.234 0.766 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.227 0.773 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.592 0.064 10.897 22.419 hybrid contribution 0.366 0.904 -1.817 2.063 sum -19.227 0.968 9.079 21.284 Atomic orbital electron populations 1.22843 0.80376 1.03359 1.00113 1.88029 1.19776 1.25201 1.95417 1.22234 0.91739 0.87020 1.02639 1.20208 0.88616 0.84605 0.76931 1.90750 1.74578 1.26449 1.47662 1.45742 1.07139 1.08651 1.75976 1.21552 0.78516 0.96468 1.03528 1.21997 0.94762 0.92693 0.87843 0.92041 1.23016 0.91855 0.92864 1.01327 1.61066 1.01528 1.01849 1.59600 1.22134 0.90665 1.03554 0.92354 1.21060 0.84876 0.85059 0.90062 1.90476 1.32013 1.56299 1.69882 1.42025 1.07939 1.61723 1.07351 1.19643 0.95230 1.46955 0.81506 0.88082 1.25290 0.94754 0.96984 1.00766 1.69600 0.98599 1.48782 1.36790 0.85925 0.77205 0.79031 0.82103 1.19913 1.20863 1.19865 1.21642 0.97761 0.91419 0.95176 1.21283 0.97330 0.99311 1.01398 1.21620 0.96869 0.81274 1.01191 1.87799 1.89274 1.20063 1.30787 0.93786 0.89065 0.93794 0.90175 0.90212 0.76565 0.89865 0.90201 0.90881 0.91053 0.89127 0.89433 0.77333 0.91663 0.92475 0.91438 0.91259 0.90315 0.89654 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.10 10.24 -55.14 -0.56 -4.66 16 3 C 0.04 0.38 6.42 36.00 0.23 0.61 16 4 C 0.51 6.35 7.91 -10.99 -0.09 6.26 16 5 O -0.52 -9.03 16.50 -14.35 -0.24 -9.26 16 6 N -0.72 -7.62 5.48 -60.30 -0.33 -7.95 16 7 C 0.12 1.54 5.18 -4.04 -0.02 1.52 16 8 C 0.09 1.12 2.01 -26.12 -0.05 1.07 16 9 H 0.06 0.81 6.57 -51.93 -0.34 0.46 16 10 C 0.04 0.59 4.91 -2.32 -0.01 0.57 16 11 N -0.52 -8.27 4.32 -235.58 -1.02 -9.29 16 12 C 0.04 0.77 5.59 -4.98 -0.03 0.74 16 13 C 0.40 8.97 6.91 -10.99 -0.08 8.89 16 14 O -0.60 -14.79 12.29 5.55 0.07 -14.73 16 15 N -0.56 -13.61 5.29 -10.97 -0.06 -13.67 16 16 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 17 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 18 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 19 N -0.90 -24.02 13.05 55.50 0.72 -23.29 16 20 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 C 0.07 1.06 4.00 -4.80 -0.02 1.04 16 25 C -0.15 -1.81 5.65 -29.39 -0.17 -1.97 16 26 C 0.07 0.69 6.21 33.96 0.21 0.90 16 27 O -0.36 -4.51 10.00 -32.90 -0.33 -4.84 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.40 3.10 8.45 -40.82 -0.35 2.76 16 34 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.08 7.98 -51.93 -0.41 0.67 16 37 H 0.07 1.33 6.00 -51.93 -0.31 1.02 16 38 H 0.09 1.42 8.02 -51.93 -0.42 1.00 16 39 H 0.09 1.39 8.12 -51.93 -0.42 0.97 16 40 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 42 H 0.06 0.99 5.93 -51.93 -0.31 0.68 16 43 H 0.07 1.11 7.45 -51.93 -0.39 0.72 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.05 0.43 7.47 -51.93 -0.39 0.04 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -34.00 379.72 -7.58 -41.58 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -7.39 Total: 11.56 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 0.85 Total: 13.09 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.68 Total: -54.20 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.06 Total: -33.49 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.00 -7.58 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148941171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.965 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds