Wall clock time and date at job start Tue Mar 31 2020 05:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00405 * 2 1 4 4 H 1.48501 * 109.47093 * 269.99677 * 3 2 1 5 5 H 1.48503 * 109.47035 * 29.99924 * 3 2 1 6 6 H 1.48502 * 109.47304 * 150.00050 * 3 2 1 7 7 C 1.38955 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99967 * 0.02562 * 7 2 1 9 9 N 1.37094 * 120.00241 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00375 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99622 * 359.97438 * 10 9 7 12 12 C 1.50691 * 120.00277 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47271 * 179.97438 * 12 10 9 14 14 C 1.46899 * 110.99878 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46913 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47034 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.47083 * 180.02562 * 16 15 14 18 18 C 1.34782 * 120.00257 * 179.97438 * 17 16 15 19 19 O 1.21276 * 119.99759 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00125 * 180.02562 * 18 17 16 21 21 F 1.39898 * 109.47057 * 310.00200 * 20 18 17 22 22 C 1.52997 * 109.47265 * 70.00174 * 20 18 17 23 23 C 1.52999 * 109.47592 * 180.02562 * 22 20 18 24 24 C 1.53006 * 109.46626 * 300.00035 * 23 22 20 25 25 C 1.52997 * 109.47164 * 59.99702 * 24 23 22 26 26 C 1.52996 * 109.46861 * 190.00154 * 20 18 17 27 27 H 0.97001 * 119.99866 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99635 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47230 * 59.99617 * 12 10 9 30 30 H 1.08998 * 109.47135 * 299.99974 * 12 10 9 31 31 H 1.00903 * 111.00077 * 303.95205 * 13 12 10 32 32 H 1.09001 * 109.47222 * 60.00065 * 14 13 12 33 33 H 1.08997 * 109.47269 * 300.00165 * 14 13 12 34 34 H 1.09001 * 109.47020 * 60.00068 * 15 14 13 35 35 H 1.08997 * 109.47391 * 300.00217 * 15 14 13 36 36 H 1.08996 * 109.47285 * 60.00599 * 16 15 14 37 37 H 1.09002 * 109.47181 * 299.99568 * 16 15 14 38 38 H 0.97008 * 120.00151 * 0.02562 * 17 16 15 39 39 H 1.09000 * 109.47140 * 59.99748 * 22 20 18 40 40 H 1.09002 * 109.47045 * 299.99841 * 22 20 18 41 41 H 1.08993 * 109.47839 * 180.02562 * 23 22 20 42 42 H 1.09000 * 109.47160 * 59.99666 * 23 22 20 43 43 H 1.09001 * 109.46998 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.47050 * 299.99699 * 24 23 22 45 45 H 1.09000 * 109.47140 * 60.00051 * 25 24 23 46 46 H 1.09001 * 109.47230 * 179.97438 * 25 24 23 47 47 H 1.08992 * 109.47534 * 60.00272 * 26 20 18 48 48 H 1.08996 * 109.47134 * 299.99466 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3797 -1.2035 0.0011 10 6 4.0536 -2.3707 0.0011 11 8 3.4470 -3.4211 0.0011 12 6 5.5605 -2.3708 0.0022 13 7 6.0501 -3.7559 0.0026 14 6 7.5186 -3.7951 0.0031 15 6 7.9898 -5.2507 0.0042 16 6 9.5193 -5.2916 0.0054 17 7 9.9705 -6.6854 0.0057 18 6 11.2886 -6.9671 0.0062 19 8 12.1010 -6.0667 0.0069 20 6 11.7527 -8.4008 0.0060 21 9 11.0892 -9.1059 1.0159 22 6 11.4411 -9.0376 -1.3498 23 6 11.9117 -10.4934 -1.3498 24 6 13.4202 -10.5416 -1.0984 25 6 13.7318 -9.9049 0.2574 26 6 13.2612 -8.4485 0.2572 27 1 -0.4850 0.8401 -0.0004 28 1 3.8648 -0.3635 0.0014 29 1 5.9232 -1.8574 0.8927 30 1 5.9246 -1.8567 -0.8872 31 1 5.6740 -4.2722 0.7837 32 1 7.8952 -3.2910 0.8932 33 1 7.8958 -3.2913 -0.8867 34 1 7.6132 -5.7552 -0.8857 35 1 7.6126 -5.7542 0.8943 36 1 9.8955 -4.7874 0.8954 37 1 9.8969 -4.7882 -0.8846 38 1 9.3207 -7.4057 0.0049 39 1 11.9580 -8.4882 -2.1366 40 1 10.3664 -9.0036 -1.5287 41 1 11.6901 -10.9469 -2.3158 42 1 11.3944 -11.0425 -0.5630 43 1 13.7555 -11.5788 -1.0980 44 1 13.9374 -9.9925 -1.8852 45 1 13.2146 -10.4540 1.0442 46 1 14.8064 -9.9396 0.4368 47 1 13.4832 -7.9949 1.2231 48 1 13.7780 -7.8992 -0.5296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170155889.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:25 Heat of formation + Delta-G solvation = -141.752776 kcal Electronic energy + Delta-G solvation = -27273.667736 eV Core-core repulsion = 23083.898540 eV Total energy + Delta-G solvation = -4189.769196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.39503 -40.22429 -38.53510 -37.91783 -36.67221 -35.05765 -33.92001 -32.06010 -31.65859 -31.36289 -30.82353 -27.42630 -25.27378 -23.98840 -23.36687 -22.86337 -21.84600 -20.91105 -20.10693 -19.38962 -18.42121 -18.11472 -16.99272 -16.53814 -16.36558 -15.94260 -15.63914 -15.43069 -15.17824 -14.98371 -14.90896 -14.40582 -14.19564 -13.98678 -13.94547 -13.64540 -13.22758 -13.08484 -12.90437 -12.84116 -12.69195 -12.41447 -12.38046 -12.16671 -11.96476 -11.75446 -11.65187 -11.57398 -11.25652 -11.20795 -11.12929 -11.05583 -10.64554 -10.60440 -10.07905 -9.98552 -9.58531 -9.51398 -8.62188 -8.21993 -8.17143 -6.32229 -3.83735 2.01221 2.54607 3.01717 3.06332 3.14431 3.72350 3.75206 3.86733 4.00274 4.07154 4.09893 4.10810 4.50488 4.54278 4.65070 4.70081 4.74089 4.76927 4.88709 4.93869 4.99189 5.01032 5.20605 5.21639 5.29654 5.36001 5.38876 5.46825 5.50000 5.51213 5.56592 5.60534 5.65626 5.68958 5.78286 5.83776 5.87563 5.90078 5.93922 6.02308 6.96587 7.03751 7.52320 7.57105 7.64274 8.13246 8.58526 8.93724 9.41217 9.81272 10.80870 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.038034 B = 0.001520 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.003442 B =18414.249348 C =18823.185682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.565 6.565 12 C 0.048 3.952 13 N -0.669 5.669 14 C 0.063 3.937 15 C -0.130 4.130 16 C 0.119 3.881 17 N -0.718 5.718 18 C 0.499 3.501 19 O -0.524 6.524 20 C 0.111 3.889 21 F -0.192 7.192 22 C -0.138 4.138 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.123 4.123 27 H 0.273 0.727 28 H 0.371 0.629 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.351 0.649 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.405 0.595 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.375 -17.417 -1.134 34.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.447 6.447 12 C -0.085 4.085 13 N -0.302 5.302 14 C -0.067 4.067 15 C -0.168 4.168 16 C -0.005 4.005 17 N -0.369 5.369 18 C 0.283 3.717 19 O -0.399 6.399 20 C 0.089 3.911 21 F -0.173 7.173 22 C -0.176 4.176 23 C -0.157 4.157 24 C -0.161 4.161 25 C -0.159 4.159 26 C -0.162 4.162 27 H 0.084 0.916 28 H 0.203 0.797 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.170 0.830 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.240 0.760 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 29.246 -17.414 -1.784 34.084 hybrid contribution 0.274 1.436 1.012 1.778 sum 29.520 -15.978 -0.772 33.576 Atomic orbital electron populations 1.69621 1.05651 1.27513 1.49300 1.25039 0.95495 0.97984 0.97608 0.86664 0.79742 0.84008 0.78918 1.19581 1.20173 1.19535 1.19438 0.79250 0.96652 1.48143 0.86279 1.42205 1.07545 1.06167 1.67039 1.19703 0.88193 0.84571 0.84036 1.90564 1.69437 1.30953 1.53765 1.21703 0.95053 0.90346 1.01371 1.60033 1.05804 1.12855 1.51519 1.21823 0.88694 0.95348 1.00847 1.21752 0.93021 0.98153 1.03919 1.21403 0.94660 0.81657 1.02774 1.46012 1.07009 1.09652 1.74234 1.20834 0.82956 0.91036 0.76911 1.90739 1.53269 1.47347 1.48594 1.21196 0.94231 0.87769 0.87878 1.92895 1.82321 1.79927 1.62114 1.22134 1.03073 0.97764 0.94590 1.21518 0.96346 0.94996 1.02836 1.21599 0.95924 1.01191 0.97398 1.21569 1.01587 0.94694 0.98080 1.21917 0.91336 0.98305 1.04602 0.91599 0.79667 0.93690 0.89402 0.82959 0.95175 0.90712 0.89950 0.91054 0.91193 0.90917 0.75961 0.89415 0.90116 0.90848 0.90959 0.91377 0.91619 0.91179 0.90961 0.90194 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.71 13.96 55.50 0.77 -24.94 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 7 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.47 16 9 N -0.59 -14.03 5.09 -10.97 -0.06 -14.09 16 10 C 0.45 10.15 7.82 -10.99 -0.09 10.07 16 11 O -0.57 -15.13 15.78 5.54 0.09 -15.05 16 12 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 13 N -0.67 -9.94 6.13 -115.06 -0.70 -10.64 16 14 C 0.06 0.67 5.69 -3.82 -0.02 0.65 16 15 C -0.13 -1.13 5.59 -26.73 -0.15 -1.28 16 16 C 0.12 1.02 5.67 -4.04 -0.02 0.99 16 17 N -0.72 -5.86 5.53 -60.30 -0.33 -6.20 16 18 C 0.50 4.85 6.79 -10.98 -0.07 4.78 16 19 O -0.52 -6.77 15.98 5.56 0.09 -6.68 16 20 C 0.11 0.84 1.05 -91.78 -0.10 0.74 16 21 F -0.19 -1.64 15.70 2.25 0.04 -1.61 16 22 C -0.14 -0.78 4.98 -26.73 -0.13 -0.91 16 23 C -0.12 -0.57 5.80 -26.73 -0.16 -0.73 16 24 C -0.12 -0.56 5.92 -26.73 -0.16 -0.72 16 25 C -0.12 -0.66 5.80 -26.71 -0.15 -0.81 16 26 C -0.12 -0.88 4.35 -26.71 -0.12 -0.99 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.35 5.38 8.43 -39.29 -0.33 5.05 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.41 2.58 8.44 -40.82 -0.34 2.24 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.07 0.39 7.80 -51.93 -0.41 -0.02 16 43 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.41 7.80 -51.93 -0.41 0.01 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.65 7.99 -51.93 -0.41 0.23 16 LS Contribution 391.98 15.07 5.91 5.91 Total: -1.00 -34.23 391.98 -8.40 -42.63 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -8.03 Total: 11.29 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.45 Total: 4.76 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.32 Total: -55.87 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.18 Total: -21.73 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.23 -8.40 -42.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170155889.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.122 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds