Wall clock time and date at job start Tue Mar 31 2020 05:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47012 * 2 1 4 4 C 1.53000 * 109.47008 * 120.00147 * 2 1 3 5 5 H 1.09007 * 109.46659 * 184.99892 * 4 2 1 6 6 F 1.39895 * 109.47058 * 304.99726 * 4 2 1 7 7 C 1.50699 * 109.47351 * 65.00074 * 4 2 1 8 8 O 1.21276 * 119.99936 * 315.00168 * 7 4 2 9 9 N 1.34778 * 119.99976 * 134.99538 * 7 4 2 10 10 C 1.47425 * 125.65003 * 359.97438 * 9 7 4 11 11 C 1.54906 * 104.83394 * 204.15837 * 10 9 7 12 12 C 1.55161 * 101.58261 * 322.99487 * 11 10 9 13 13 H 1.08999 * 110.71229 * 276.96041 * 12 11 10 14 14 N 1.46895 * 110.71832 * 153.86650 * 12 11 10 15 15 C 1.46893 * 111.00318 * 86.45076 * 14 12 11 16 16 C 1.50708 * 109.47146 * 179.97438 * 15 14 12 17 17 O 1.21288 * 119.99815 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99719 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99349 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00515 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99490 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00236 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00316 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00267 * 23 21 19 26 26 H 1.48504 * 109.46913 * 150.00066 * 23 21 19 27 27 C 1.47014 * 125.64671 * 180.02562 * 9 7 4 28 28 H 1.09000 * 109.88746 * 298.32913 * 27 9 7 29 29 C 1.53006 * 109.88563 * 59.49289 * 27 9 7 30 30 H 1.08997 * 109.46990 * 299.99695 * 1 2 3 31 31 H 1.09000 * 109.47179 * 59.99961 * 1 2 3 32 32 H 1.08996 * 109.46854 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47283 * 239.99873 * 2 1 3 34 34 H 1.09000 * 109.47181 * 300.00038 * 3 2 1 35 35 H 1.08997 * 109.46994 * 60.00308 * 3 2 1 36 36 H 1.09005 * 109.47005 * 179.97438 * 3 2 1 37 37 H 1.09000 * 110.36249 * 85.31913 * 10 9 7 38 38 H 1.09003 * 110.36625 * 323.00247 * 10 9 7 39 39 H 1.08991 * 111.00503 * 204.91459 * 11 10 9 40 40 H 1.09001 * 111.03370 * 81.07984 * 11 10 9 41 41 H 1.00908 * 110.99391 * 210.40237 * 14 12 11 42 42 H 1.09002 * 109.47091 * 59.99845 * 15 14 12 43 43 H 1.09000 * 109.47343 * 299.99463 * 15 14 12 44 44 H 0.96996 * 120.00564 * 359.97438 * 18 16 15 45 45 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.47399 * 177.80489 * 29 27 9 47 47 H 1.09002 * 109.46733 * 297.81387 * 29 27 9 48 48 H 1.09003 * 109.46551 * 57.80292 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6443 1.2951 6 9 1.4822 -0.1315 2.3886 7 6 1.6414 -2.1733 1.1889 8 8 0.5143 -2.4797 0.8621 9 7 2.5374 -3.1316 1.4979 10 6 3.9345 -2.9013 1.9085 11 6 4.6757 -4.2121 1.5451 12 6 3.6003 -5.2803 1.8767 13 1 3.6088 -5.5187 2.9402 14 7 3.8064 -6.4922 1.0725 15 6 4.7571 -7.4019 1.7255 16 6 4.9423 -8.6312 0.8735 17 8 4.3410 -8.7389 -0.1743 18 7 5.7752 -9.6111 1.2764 19 6 5.9440 -10.7291 0.5010 20 1 5.4093 -10.8247 -0.4324 21 6 6.8032 -11.7392 0.9161 22 7 7.4543 -11.6226 2.0516 23 14 7.0327 -13.2628 -0.1400 24 1 6.0351 -14.2910 0.2510 25 1 6.8430 -12.9075 -1.5694 26 1 8.4024 -13.8011 0.0587 27 6 2.2836 -4.5795 1.4805 28 1 1.5014 -4.8276 2.1979 29 6 1.8633 -5.0174 0.0759 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4425 0.0005 37 1 3.9893 -2.7194 2.9818 38 1 4.3579 -2.0610 1.3583 39 1 5.5621 -4.3444 2.1653 40 1 4.9352 -4.2343 0.4867 41 1 2.9299 -6.9569 0.8878 42 1 4.3699 -7.6922 2.7022 43 1 5.7156 -6.8979 1.8497 44 1 6.2558 -9.5251 2.1145 45 1 8.0538 -12.3280 2.3415 46 1 1.7148 -6.0971 0.0611 47 1 0.9332 -4.5187 -0.1969 48 1 2.6426 -4.7479 -0.6370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179381348.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:32 Heat of formation + Delta-G solvation = -114.178777 kcal Electronic energy + Delta-G solvation = -28738.708623 eV Core-core repulsion = 24550.135126 eV Total energy + Delta-G solvation = -4188.573497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.22993 -40.60250 -38.63827 -37.90134 -35.57574 -34.90811 -33.85104 -31.57370 -31.25809 -30.91840 -28.03045 -27.42025 -26.66245 -25.31544 -23.88262 -23.36252 -21.24726 -19.99351 -19.46032 -19.25835 -18.01558 -17.90485 -17.18225 -16.46776 -16.18968 -15.85662 -15.83034 -15.34671 -14.83113 -14.49221 -14.29583 -14.07243 -13.93728 -13.76483 -13.65629 -13.31866 -13.20172 -13.10849 -12.79034 -12.42957 -12.38544 -12.28400 -12.19611 -12.01636 -11.72513 -11.56958 -11.48349 -11.40758 -11.25950 -11.13223 -11.02621 -10.92424 -10.73616 -10.41675 -10.24763 -9.66371 -9.54099 -8.98447 -8.52243 -8.17814 -7.99717 -6.44907 -3.85764 2.13438 2.45080 3.15740 3.24751 3.30623 3.81867 3.86628 4.00366 4.02553 4.17389 4.24686 4.34945 4.38596 4.43165 4.84760 4.89162 4.91592 4.99266 5.04989 5.14627 5.16349 5.18514 5.25520 5.35800 5.39111 5.46663 5.50725 5.54273 5.66096 5.70112 5.71697 5.77443 5.90639 5.93087 5.98498 6.02587 6.13569 6.22722 6.26922 6.40821 7.09628 7.15237 7.52336 7.52996 7.75766 8.02873 8.57501 9.14671 9.50611 10.01720 10.72714 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.034965 B = 0.002018 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.598109 B =13871.546593 C =14152.045702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.110 4.110 3 C -0.149 4.149 4 C 0.087 3.913 5 H 0.099 0.901 6 F -0.188 7.188 7 C 0.509 3.491 8 O -0.512 6.512 9 N -0.604 5.604 10 C 0.092 3.908 11 C -0.122 4.122 12 C 0.076 3.924 13 H 0.060 0.940 14 N -0.654 5.654 15 C 0.049 3.951 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.269 1.269 26 H -0.284 1.284 27 C 0.135 3.865 28 H 0.076 0.924 29 C -0.154 4.154 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.354 0.646 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 23.570 2.333 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.129 4.129 3 C -0.206 4.206 4 C 0.048 3.952 5 H 0.117 0.883 6 F -0.169 7.169 7 C 0.296 3.704 8 O -0.388 6.388 9 N -0.339 5.339 10 C -0.031 4.031 11 C -0.161 4.161 12 C -0.035 4.035 13 H 0.078 0.922 14 N -0.290 5.290 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.194 1.194 26 H -0.209 1.209 27 C 0.032 3.968 28 H 0.094 0.906 29 C -0.213 4.213 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.177 0.823 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.869 23.532 1.147 24.541 hybrid contribution 0.174 -1.067 1.032 1.495 sum -6.695 22.465 2.179 23.542 Atomic orbital electron populations 1.22119 0.93113 1.05363 1.01599 1.21564 0.98750 0.96814 0.95781 1.21857 1.00957 0.94913 1.02870 1.21663 0.99280 0.89397 0.84870 0.88332 1.92861 1.87571 1.84503 1.51958 1.20570 0.84899 0.87088 0.77889 1.90626 1.19485 1.82457 1.46196 1.48620 1.12334 1.06505 1.66395 1.22529 0.80881 0.99455 1.00246 1.22880 0.97512 0.91761 1.03913 1.22563 0.93475 0.91629 0.95824 0.92206 1.60368 1.16724 1.06422 1.45472 1.21736 0.97643 0.93538 0.95428 1.19767 0.84514 0.84946 0.88214 1.90530 1.50747 1.80222 1.25189 1.41860 1.39206 1.16742 1.22153 1.19701 1.24216 0.94591 1.04382 0.87901 1.25270 0.96339 0.99602 0.96750 1.69610 1.28705 1.34943 1.21020 0.85854 0.77441 0.80904 0.80074 1.20416 1.19390 1.20917 1.21675 0.96905 0.79077 0.99162 0.90594 1.21997 1.02095 1.02025 0.95139 0.92505 0.92709 0.88811 0.89290 0.91639 0.91926 0.92384 0.90755 0.90279 0.89676 0.89008 0.82276 0.93730 0.89516 0.77464 0.91857 0.90796 0.91718 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 8.71 37.16 0.32 -1.24 16 2 C -0.11 -0.89 2.75 -90.62 -0.25 -1.14 16 3 C -0.15 -0.93 9.11 37.16 0.34 -0.59 16 4 C 0.09 0.77 3.23 -27.88 -0.09 0.68 16 5 H 0.10 0.61 6.11 -51.92 -0.32 0.29 16 6 F -0.19 -2.00 16.03 2.25 0.04 -1.96 16 7 C 0.51 5.82 6.97 -10.99 -0.08 5.74 16 8 O -0.51 -7.34 12.70 5.56 0.07 -7.27 16 9 N -0.60 -6.25 3.08 -163.02 -0.50 -6.75 16 10 C 0.09 0.69 6.56 -2.53 -0.02 0.68 16 11 C -0.12 -1.12 6.71 -24.58 -0.16 -1.28 16 12 C 0.08 0.85 3.11 -65.88 -0.21 0.64 16 13 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 14 N -0.65 -9.59 5.21 -106.06 -0.55 -10.14 16 15 C 0.05 0.80 6.02 -4.98 -0.03 0.77 16 16 C 0.44 9.99 7.82 -10.98 -0.09 9.91 16 17 O -0.58 -15.36 15.78 5.55 0.09 -15.27 16 18 N -0.56 -13.89 5.29 -10.96 -0.06 -13.94 16 19 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 23 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 C 0.13 1.54 3.41 -66.95 -0.23 1.31 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 29 C -0.15 -1.96 8.40 37.16 0.31 -1.65 16 30 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 1.12 5.25 -51.93 -0.27 0.84 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.42 7.93 -51.93 -0.41 0.00 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.44 6.73 -51.93 -0.35 0.09 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.35 5.51 6.14 -39.29 -0.24 5.27 16 42 H 0.04 0.66 8.09 -51.93 -0.42 0.24 16 43 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 44 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.07 0.97 6.23 -51.93 -0.32 0.65 16 47 H 0.06 0.88 6.76 -51.93 -0.35 0.52 16 48 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -31.94 383.60 -7.41 -39.34 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -7.56 Total: 11.88 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.41 Total: 5.96 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.39 Total: -54.25 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.16 Total: -22.54 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.94 -7.41 -39.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179381348.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.834 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds